Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Forward (+)

5534572 .. 5537445

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1047400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGAGTGGAGAAGGAAGTTGTGAGGGCTGGAAGCGGTGCCAAACCGTCCGTCGGACAGAACGTCACCGTTCACTGCACTGGCTTTGGAAAAAATGGCGATCTGAGTCAGAAGTTCTGGAGCACCAAGGACCCTGGGCAGCAGCCTTTCAGCTTCAAAATAGGCCTGGGATCTGTTATAAAAGGATGGGATGAAGGTGTTCTTCAAATGCAAGTGGGAGAAGTTGCTCGTCTGCGGTGCTCTCCAGATTATGCATATGGCAAAGATGGATTTGCTGCATGGGGGATACAACCTCACTCGGTTCTGGTTTTTGAGATTGAAGTCCTGAGTGCGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

113

Amino Acids

12.03

Weight (kDa)

6.71

Isoelectric Point (pI)

24.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	15 - 109	4.1e-25	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
Acc16I	TGCGCA	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	2 cut(s)	36, 235
AclWI	GGATC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	157, 206, 320
AhdI	GACNNNNNGTC	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	133, 165
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw21I	GWGCWC	2 cut(s)	125, 242
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	3 cut(s)	139, 142, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	38
Bbv12I	GWGCWC	2 cut(s)	125, 242
BbvI	GCAGC	3 cut(s)	151, 154, 262
BccI	CCATC	2 cut(s)	180, 260
BciT130I	CCWGG	2 cut(s)	135, 167
BciVI	GTATCC	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	3 cut(s)	140, 143, 276
BlsI	GCNGC	3 cut(s)	141, 144, 277
Bme1390I	CCNGG	2 cut(s)	135, 167
Bme18I	GGWCC	1 cut(s)	130
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	40, 132
BmrFI	CCNGG	2 cut(s)	135, 167
BpmI	CTGGAG	2 cut(s)	139, 228
BsaJI	CCNNGG	4 cut(s)	126, 133, 134, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	135, 167
BseDI	CCNNGG	4 cut(s)	126, 133, 134, 166
BseGI	GGATG	2 cut(s)	191, 196
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	95, 317
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	3 cut(s)	151, 154, 262
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	125, 242
BslI	CCNNNNNNNGG	1 cut(s)	53
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	125, 242
Bsp143I	GATC	2 cut(s)	100, 170
BspACI	CCGC	2 cut(s)	36, 235
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	96, 318
BspLI	GGNNCC	2 cut(s)	40, 132
BspPI	GGATC	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	4 cut(s)	126, 133, 134, 166
BssMI	GATC	2 cut(s)	100, 170
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	135, 167
Bst4CI	ACNGT	2 cut(s)	48, 70
BstDEI	CTNAG	2 cut(s)	104, 326
BstF5I	GGATG	2 cut(s)	191, 196
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	2 cut(s)	103, 173
BstMBI	GATC	2 cut(s)	100, 170
BstNI	CCWGG	2 cut(s)	135, 167
BstSCI	CCNGG	2 cut(s)	133, 165
BstV1I	GCAGC	3 cut(s)	151, 154, 262
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	191, 196
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	73, 78
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	130
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	5 cut(s)	29, 84, 145, 153, 165
CviKI_1	RGCY	5 cut(s)	29, 84, 145, 153, 165
DdeI	CTNAG	2 cut(s)	104, 326
DpnI	GATC	2 cut(s)	102, 172
DpnII	GATC	2 cut(s)	100, 170
DriI	GACNNNNNGTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	133, 165
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	282
FaiI	YATR	5 cut(s)	179, 252, 256, 258, 280
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	140, 143, 276
FokI	GGATG	2 cut(s)	198, 203
Fsp4HI	GCNGC	3 cut(s)	140, 143, 276
FspI	TGCGCA	1 cut(s)	333
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	3 cut(s)	140, 143, 276
GsuI	CTGGAG	2 cut(s)	139, 228
HaeIII	GGCC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	56, 105, 111
Hpy188III	TCNNGA	3 cut(s)	118, 245, 325
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	7, 188
HpyCH4III	ACNGT	2 cut(s)	48, 70
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	4 cut(s)	78, 211, 254, 278
HpyF3I	CTNAG	2 cut(s)	104, 326
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	100, 170
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	9 cut(s)	15, 66, 103, 120, 147, 152, 179, 258, 290
Lsp1109I	GCAGC	3 cut(s)	151, 154, 262
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	102, 172
MboI	GATC	2 cut(s)	100, 170
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	125, 242
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	2 cut(s)	18, 303
Mph1103I	ATGCAT	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	135, 167
MvaI	CCWGG	2 cut(s)	135, 167
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	100, 170
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	2 cut(s)	40, 132
NmuCI	GTSAC	1 cut(s)	64
NsbI	TGCGCA	1 cut(s)	333
NsiI	ATGCAT	1 cut(s)	256
PasI	CCCWGGG	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	141, 144, 277
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	133, 165
PspGI	CCWGG	2 cut(s)	133, 165
PspN4I	GGNNCC	2 cut(s)	40, 132
PspPI	GGNCC	1 cut(s)	130
PspPPI	RGGWCCY	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	170
SatI	GCNGC	3 cut(s)	140, 143, 276
Sau3AI	GATC	2 cut(s)	100, 170
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	135, 167
SduI	GDGCHC	2 cut(s)	125, 242
SetI	ASST	4 cut(s)	66, 155, 199, 295
SinI	GGWCC	1 cut(s)	130
SseBI	AGGCCT	1 cut(s)	165
SsiI	CCGC	2 cut(s)	36, 235
StuI	AGGCCT	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	133, 165
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	48, 70
TaiI	ACGT	1 cut(s)	66
TscAI	CASTG	2 cut(s)	80, 85
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	3 cut(s)	139, 142, 275
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	80, 85
VpaK11BI	GGWCC	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.