Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Forward (+)

10336989 .. 10338368

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGAGTGGAGAAGGAAGTTCTGAGCGCTGGAACTGGTCCCAAACCGGTACCAGGTCAAAAGGTCACCGTTCACTGCACTGGTTATGGAAAAAATGGTGATCTCAATCTCAAGTTTTGGAGCACTAAGGACCCTGGTCAGCAGCCTTTCAGCTTCAAAATTGGCCAAGGTTCTGTTATAAAAGGGTGGGATGAAGGTGTCCTTGGAATGCAAGTTGGAGAAGTTGCTCGCCTGCGGTGCTCTCCAGACTATGCATATGGATCTGGCGGATTTCCTGCATGGGGGATACAACCTAATTCAGTTTTGGTTTTTGAGATTGAAGTTCTAAGCTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

113

Amino Acids

11.96

Weight (kDa)

5.8

Isoelectric Point (pI)

23.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	15 - 109	1.1e-25	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	2 cut(s)	235, 267
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	163
AfaI	GTAC	1 cut(s)	51
AfeI	AGCGCT	1 cut(s)	28
AfiI	CCNNNNNNNGG	2 cut(s)	53, 281
AgeI	ACCGGT	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	157, 320
AjnI	CCWGG	2 cut(s)	52, 133
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	2 cut(s)	153, 330
AluI	AGCT	2 cut(s)	153, 330
Alw21I	GWGCWC	2 cut(s)	125, 242
AlwI	GGATC	1 cut(s)	268
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	142
AsiGI	ACCGGT	1 cut(s)	46
Asp718I	GGTACC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	38, 130
AsuHPI	GGTGA	2 cut(s)	58, 110
AvaII	GGWCC	2 cut(s)	38, 130
BalI	TGGCCA	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	49
Bbv12I	GWGCWC	2 cut(s)	125, 242
BbvI	GCAGC	1 cut(s)	154
BciT130I	CCWGG	2 cut(s)	54, 135
BciVI	GTATCC	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	2 cut(s)	54, 135
Bme18I	GGWCC	2 cut(s)	38, 130
BmgT120I	GGNCC	2 cut(s)	38, 130
BmiI	GGNNCC	3 cut(s)	40, 51, 132
BmrFI	CCNGG	2 cut(s)	54, 135
BoxI	GACNNNNGTC	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	133, 166, 202
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 281
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	40, 85
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	54, 135
BseDI	CCNNGG	3 cut(s)	133, 166, 202
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	53, 281
BseMII	CTCAG	1 cut(s)	14
BseNI	ACTGG	2 cut(s)	40, 85
BseXI	GCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	49
BshTI	ACCGGT	1 cut(s)	46
BsiHKAI	GWGCWC	2 cut(s)	125, 242
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	53, 281
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	125, 242
Bsp143I	GATC	2 cut(s)	100, 260
BspACI	CCGC	2 cut(s)	235, 267
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	40, 51, 132
BspPI	GGATC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	40, 85
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	133, 166, 202
BssMI	GATC	2 cut(s)	100, 260
BssT1I	CCWWGG	2 cut(s)	166, 202
Bst2UI	CCWGG	2 cut(s)	54, 135
Bst4CI	ACNGT	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	229, 233
BstDEI	CTNAG	3 cut(s)	23, 126, 326
BstEII	GGTNACC	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	103, 263
BstMBI	GATC	2 cut(s)	100, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	54, 135
BstPAI	GACNNNNGTC	1 cut(s)	135
BstPI	GGTNACC	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	52, 133
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	73, 78
Cac8I	GCNNGC	2 cut(s)	229, 233
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	38, 130
CsiI	ACCWGGT	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	50
CspAI	ACCGGT	1 cut(s)	46
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	4 cut(s)	145, 153, 165, 330
CviKI_1	RGCY	4 cut(s)	145, 153, 165, 330
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	3 cut(s)	23, 126, 326
DpnI	GATC	2 cut(s)	102, 262
DpnII	GATC	2 cut(s)	100, 260
EaeI	YGGCCR	1 cut(s)	163
EciI	GGCGGA	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	166, 202
Eco47I	GGWCC	2 cut(s)	38, 130
Eco47III	AGCGCT	1 cut(s)	28
Eco91I	GGTNACC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	52, 133
EcoT14I	CCWWGG	2 cut(s)	166, 202
EcoT22I	ATGCAT	1 cut(s)	256
ErhI	CCWWGG	2 cut(s)	166, 202
FaeI	CATG	1 cut(s)	282
FaiI	YATR	6 cut(s)	87, 179, 252, 256, 258, 280
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	143
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	328
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	58, 110
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	7, 188
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	78, 211, 254, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	3 cut(s)	23, 126, 326
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	100, 260
LmnI	GCTCC	1 cut(s)	120
Lsp1109I	GCAGC	1 cut(s)	154
MabI	ACCWGGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	102, 262
MboI	GATC	2 cut(s)	100, 260
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	125, 242
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	2 cut(s)	159, 295
MluNI	TGGCCA	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	196
Mox20I	TGGCCA	1 cut(s)	165
Mph1103I	ATGCAT	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	165
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	54, 135
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	2 cut(s)	54, 135
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	100, 260
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	3 cut(s)	40, 51, 132
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	213
PinAI	ACCGGT	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	130
PshAI	GACNNNNGTC	1 cut(s)	135
PsiI	TTATAA	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	52, 133
PspEI	GGTNACC	1 cut(s)	64
PspGI	CCWGG	2 cut(s)	52, 133
PspN4I	GGNNCC	3 cut(s)	40, 51, 132
PspPI	GGNCC	2 cut(s)	38, 130
PspPPI	RGGWCCY	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	100, 260
Sau96I	GGNCC	2 cut(s)	38, 130
ScrFI	CCNGG	2 cut(s)	54, 135
SduI	GDGCHC	2 cut(s)	125, 242
SetI	ASST	7 cut(s)	58, 66, 155, 172, 199, 295, 332
SexAI	ACCWGGT	1 cut(s)	52
SinI	GGWCC	2 cut(s)	38, 130
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	159, 295
SsiI	CCGC	2 cut(s)	235, 267
StyD4I	CCNGG	2 cut(s)	52, 133
StyI	CCWWGG	2 cut(s)	166, 202
TaaI	ACNGT	1 cut(s)	70
TasI	AATT	2 cut(s)	159, 295
TscAI	CASTG	2 cut(s)	80, 85
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	2 cut(s)	80, 85
VpaK11BI	GGWCC	2 cut(s)	38, 130
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.