Rroxscaffold_7G00197140

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005690
Physical Location & Seq
Reverse (-)
40978874 .. 40981184
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197140.1

Sequence Viewer

Length: 291 bp
ATGGGAGTGGAGAAGGAAGTTCTGAGCGCTGGAACTGGTCCCAAACCGGTACCAGGTCAAAAGGTCACCGTTCACTGCACTGGTTATGGAAAAAATGGTGATCTCAATCTGAAGTTTTGGAGGACCCTGGGCAGCAGCCCATTCAGCTTCAAAATTGGCCAAGGCTCTGTTATAAAAGGGTGGGATGAAGGCGTCCTTGGAATGCAAGTTGGAGAAGTTGCTCGTCTGAGGTGCTCTCCAGACTATGCTTATGGATCTGGTGGATTTCCTGCATGGGGGGATACAACCTAA

Protein Analysis

96

Amino Acids

10.12

Weight (kDa)

8.64

Isoelectric Point (pI)

19.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 15 - 89 5.3e-19 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 49
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 51
AfeI AGCGCT 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 53, 275
AgeI ACCGGT 1 cut(s) 46
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 52, 126
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 236
AlwI GGATC 1 cut(s) 262
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 132, 135
AsiGI ACCGGT 1 cut(s) 46
Asp718I GGTACC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 38, 123
AsuHPI GGTGA 2 cut(s) 58, 110
AvaII GGWCC 2 cut(s) 38, 123
BalI TGGCCA 1 cut(s) 159
BanI GGYRCC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 144, 147
BciT130I CCWGG 2 cut(s) 54, 128
BciVI GTATCC 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 30
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 2 cut(s) 133, 136
BlsI GCNGC 2 cut(s) 134, 137
Bme1390I CCNGG 2 cut(s) 54, 128
Bme18I GGWCC 2 cut(s) 38, 123
BmgT120I GGNCC 2 cut(s) 38, 123
BmiI GGNNCC 3 cut(s) 40, 51, 125
BmrFI CCNGG 2 cut(s) 54, 128
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpmI CTGGAG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 4 cut(s) 126, 127, 160, 196
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 275
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 40, 85
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 2 cut(s) 54, 128
BseDI CCNNGG 4 cut(s) 126, 127, 160, 196
BseGI GGATG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 53, 275
BseMII CTCAG 2 cut(s) 14, 218
BseNI ACTGG 2 cut(s) 40, 85
BseXI GCAGC 2 cut(s) 144, 147
BsgI GTGCAG 1 cut(s) 61
BshFI GGCC 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 49
BshTI ACCGGT 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 53, 275
BsmFI GGGAC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 100, 254
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 15, 219
BspLI GGNNCC 3 cut(s) 40, 51, 125
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 2 cut(s) 40, 85
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 4 cut(s) 126, 127, 160, 196
BssMI GATC 2 cut(s) 100, 254
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 160, 196
Bst2UI CCWGG 2 cut(s) 54, 128
Bst4CI ACNGT 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 23, 227
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 190
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 103, 257
BstMBI GATC 2 cut(s) 100, 254
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 2 cut(s) 54, 128
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 52, 126
BstV1I GCAGC 2 cut(s) 144, 147
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuI GTATCC 1 cut(s) 274
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 73, 78
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 38, 123
CseI GACGC 1 cut(s) 181
CsiI ACCWGGT 1 cut(s) 52
Csp6I GTAC 1 cut(s) 50
CspAI ACCGGT 1 cut(s) 46
CviAII CATG 1 cut(s) 273
CviJI RGCY 4 cut(s) 138, 147, 159, 165
CviKI_1 RGCY 4 cut(s) 138, 147, 159, 165
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 2 cut(s) 23, 227
DpnI GATC 2 cut(s) 102, 256
DpnII GATC 2 cut(s) 100, 254
EaeI YGGCCR 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 160, 196
Eco47I GGWCC 2 cut(s) 38, 123
Eco47III AGCGCT 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 123
EcoO65I GGTNACC 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 52, 126
EcoT14I CCWWGG 2 cut(s) 160, 196
ErhI CCWWGG 2 cut(s) 160, 196
FaeI CATG 1 cut(s) 276
FaiI YATR 5 cut(s) 87, 173, 246, 252, 274
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FaqI GGGAC 1 cut(s) 24
FatI CATG 1 cut(s) 272
Fnu4HI GCNGC 2 cut(s) 133, 136
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 133, 136
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 133, 136
GsuI CTGGAG 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 159
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 276
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HpaII CCGG 1 cut(s) 47
HphI GGTGA 2 cut(s) 58, 110
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 24, 111, 228
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 7, 182
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 3 cut(s) 78, 205, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 23, 227
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 276
HspAI GCGC 1 cut(s) 27
KpnI GGTACC 1 cut(s) 53
Kzo9I GATC 2 cut(s) 100, 254
Lsp1109I GCAGC 2 cut(s) 144, 147
MabI ACCWGGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 102, 256
MboI GATC 2 cut(s) 100, 254
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 236
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 1 cut(s) 153
MluNI TGGCCA 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 2 cut(s) 114, 222
Mox20I TGGCCA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 159
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 54, 128
Mva1269I GAATGC 1 cut(s) 207
MvaI CCWGG 2 cut(s) 54, 128
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 2 cut(s) 100, 254
NlaIII CATG 1 cut(s) 276
NlaIV GGNNCC 3 cut(s) 40, 51, 125
NmuCI GTSAC 1 cut(s) 64
PasI CCCWGGG 1 cut(s) 127
PctI GAATGC 1 cut(s) 207
PinAI ACCGGT 1 cut(s) 46
PkrI GCNGC 2 cut(s) 134, 137
PpuMI RGGWCCY 1 cut(s) 123
PsiI TTATAA 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 52, 126
PspEI GGTNACC 1 cut(s) 64
PspGI CCWGG 2 cut(s) 52, 126
PspN4I GGNNCC 3 cut(s) 40, 51, 125
PspPI GGNCC 2 cut(s) 38, 123
PspPPI RGGWCCY 1 cut(s) 123
PsuI RGATCY 1 cut(s) 254
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SatI GCNGC 2 cut(s) 133, 136
Sau3AI GATC 2 cut(s) 100, 254
Sau96I GGNCC 2 cut(s) 38, 123
ScrFI CCNGG 2 cut(s) 54, 128
SduI GDGCHC 1 cut(s) 236
SetI ASST 5 cut(s) 58, 66, 149, 233, 290
SexAI ACCWGGT 1 cut(s) 52
SinI GGWCC 2 cut(s) 38, 123
Sse9I AATT 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 52, 126
StyI CCWWGG 2 cut(s) 160, 196
TaaI ACNGT 1 cut(s) 70
TasI AATT 1 cut(s) 153
TscAI CASTG 2 cut(s) 80, 85
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 132, 135
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 2 cut(s) 80, 85
VpaK11BI GGWCC 2 cut(s) 38, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.