Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Forward (+)

646670 .. 648914

Gene Structure 2245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG003800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGAGTGGAGAAGGAAGTTCTGAGCGCTGGAACTGGTCCCAAACCGGTGCCAGGTCAAAAGGTCACCGTTCACTGCACTGGTTATGGAAAAAATGGTGATCTCAATCTCAAGTTTTGGAGCACCAAGGACCCTGGGCAGCAGCCTTTCAGCTTCAAAATTGGCCAAGGCTCTGTTATAAAAGGGTGGGATGAAGGCGTCCTTGGAATGCAAGTTGGAGAAGTTGCTCGTCTGAGGGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

81

Amino Acids

8.68

Weight (kDa)

9.25

Isoelectric Point (pI)

8.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	15 - 80	3.8e-15	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	198
AfeI	AGCGCT	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgeI	ACCGGT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	52, 133
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw21I	GWGCWC	1 cut(s)	125
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	139, 142
AsiGI	ACCGGT	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	38, 130
AsuHPI	GGTGA	2 cut(s)	58, 110
AvaII	GGWCC	2 cut(s)	38, 130
BalI	TGGCCA	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	151, 154
BciT130I	CCWGG	2 cut(s)	54, 135
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	2 cut(s)	140, 143
BlsI	GCNGC	2 cut(s)	141, 144
Bme1390I	CCNGG	2 cut(s)	54, 135
Bme18I	GGWCC	2 cut(s)	38, 130
BmgT120I	GGNCC	2 cut(s)	38, 130
BmiI	GGNNCC	3 cut(s)	40, 51, 132
BmrFI	CCNGG	2 cut(s)	54, 135
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	5 cut(s)	126, 133, 134, 166, 202
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	40, 85
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	54, 135
BseDI	CCNNGG	5 cut(s)	126, 133, 134, 166, 202
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	14, 224
BseNI	ACTGG	2 cut(s)	40, 85
BseXI	GCAGC	2 cut(s)	151, 154
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	49
BshTI	ACCGGT	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	15, 225
BspLI	GGNNCC	3 cut(s)	40, 51, 132
BspT107I	GGYRCC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	40, 85
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	5 cut(s)	126, 133, 134, 166, 202
BssMI	GATC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	3 cut(s)	126, 166, 202
Bst2UI	CCWGG	2 cut(s)	54, 135
Bst4CI	ACNGT	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	198
BstDEI	CTNAG	2 cut(s)	23, 233
BstEII	GGTNACC	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	54, 135
BstPI	GGTNACC	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	52, 133
BstV1I	GCAGC	2 cut(s)	151, 154
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	73, 78
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	38, 130
CseI	GACGC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	46
CviJI	RGCY	4 cut(s)	145, 153, 165, 171
CviKI_1	RGCY	4 cut(s)	145, 153, 165, 171
DdeI	CTNAG	2 cut(s)	23, 233
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	163
Eco130I	CCWWGG	3 cut(s)	126, 166, 202
Eco47I	GGWCC	2 cut(s)	38, 130
Eco47III	AGCGCT	1 cut(s)	28
Eco91I	GGTNACC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	52, 133
EcoT14I	CCWWGG	3 cut(s)	126, 166, 202
ErhI	CCWWGG	3 cut(s)	126, 166, 202
FaiI	YATR	2 cut(s)	87, 179
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	140, 143
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	140, 143
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	140, 143
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	58, 110
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	24, 234
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	7, 188
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	78, 211
HpyF3I	CTNAG	2 cut(s)	23, 233
Hsp92I	GRCGYC	1 cut(s)	198
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	8 cut(s)	15, 21, 39, 60, 66, 66, 120, 147
Lsp1109I	GCAGC	2 cut(s)	151, 154
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	1 cut(s)	244
Msp20I	TGGCCA	1 cut(s)	165
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	54, 135
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	2 cut(s)	54, 135
NdeII	GATC	1 cut(s)	100
NlaIV	GGNNCC	3 cut(s)	40, 51, 132
NmuCI	GTSAC	1 cut(s)	64
PasI	CCCWGGG	1 cut(s)	134
PctI	GAATGC	1 cut(s)	213
PinAI	ACCGGT	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	141, 144
PpuMI	RGGWCCY	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	52, 133
PspEI	GGTNACC	1 cut(s)	64
PspGI	CCWGG	2 cut(s)	52, 133
PspN4I	GGNNCC	3 cut(s)	40, 51, 132
PspPI	GGNCC	2 cut(s)	38, 130
PspPPI	RGGWCCY	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	244
SatI	GCNGC	2 cut(s)	140, 143
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	2 cut(s)	38, 130
ScrFI	CCNGG	2 cut(s)	54, 135
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	3 cut(s)	58, 66, 155
SinI	GGWCC	2 cut(s)	38, 130
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	52, 133
StyI	CCWWGG	3 cut(s)	126, 166, 202
TaaI	ACNGT	1 cut(s)	70
TasI	AATT	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	244
Tru9I	TTAA	1 cut(s)	244
TscAI	CASTG	2 cut(s)	80, 85
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	139, 142
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	2 cut(s)	80, 85
VpaK11BI	GGWCC	2 cut(s)	38, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.