RLG00000033836

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005690
Physical Location & Seq
Reverse (-)
32829897 .. 32831812
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033836

Sequence Viewer

Length: 717 bp
ATGGCTTCCATTCCATCATGTACCGCTGCTGCTTCCCACTCATGCGTCACCTCCAACTCCTTCAGTTCTCCAACTTGTTTTGTCAAACTCAATGCCCAGTTTCTGGGTACCCGAAACAGGCAGGGTAGGGTTAGACCCTTTGGTCTTGGACCCTCCAAGTGCTGGTTCAAATTCGGTATAGATGCAAAGGTTGCTGGAATCTACGCAAGCCAATCCGGTGGTGAGTTTGATAAAGATAATGTAGAGCAGATGGGAGTGGAGAAGCAAGTTCTGAAGGCTGGAACCGGTCCCAAACTGGTAGCAGGTCAGAATGTGACCGTTCATTGCACCGGTTATGGAAAAGATGGTGATCTGAATCAGAAGTTTTGGAGCACTAAGGACCCCGGGCAGCAGCCTTTCACCTTCAAAATTGGGCAAGGCAATGTTATAAAAGGGTGGGATGAAGGAGTCCTTGGAATGCAAGTTGGAGAAGTTGCTCGTCTGCGGTGCTCTCCAGATTATGCTTATGGAGCTAGTGGATTTCCTGCTTGGGGGATACAATCTAATTCAGTTTTGGAATTTGAGATTGAAAAGCAAGAACAGGTAGGAAGCGAGGGTGGCAAAAGAGCATCTGCTCATGTCATGACCTCAAATCTTGACGTGTTACTGACCGTACTCTTGAATTCCACTTCTGCGGGCATGGACAGTGAAGGCAGACACTTTTCAAATGATATTTAG

Protein Analysis

239

Amino Acids

25.44

Weight (kDa)

7.6

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 99 - 190 1.2e-23 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AasI GACNNNNNNGTC 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 293
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 107
AccB7I CCANNNNNTGG 2 cut(s) 103, 162
AciI CCGC 3 cut(s) 24, 484, 674
AcsI RAATTY 3 cut(s) 170, 557, 661
AcuI CTGAAG 2 cut(s) 46, 293
AfaI GTAC 3 cut(s) 22, 109, 654
AfiI CCNNNNNNNGG 4 cut(s) 103, 117, 162, 530
AflIII ACRYGT 1 cut(s) 639
AgeI ACCGGT 2 cut(s) 284, 329
AgsI TTSAA 5 cut(s) 169, 406, 569, 661, 705
AjiI CACGTC 1 cut(s) 640
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 435, 467
AluBI AGCT 1 cut(s) 512
AluI AGCT 1 cut(s) 512
Alw21I GWGCWC 2 cut(s) 374, 491
AlwNI CAGNNNCTG 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 383
ApeKI GCWGC 4 cut(s) 26, 29, 388, 391
ApoI RAATTY 3 cut(s) 170, 557, 661
AsiGI ACCGGT 2 cut(s) 284, 329
Asp718I GGTACC 1 cut(s) 107
AspS9I GGNCC 3 cut(s) 149, 287, 379
AsuC2I CCSGG 2 cut(s) 384, 385
AsuHPI GGTGA 4 cut(s) 40, 233, 359, 391
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 3 cut(s) 149, 287, 379
BanI GGYRCC 1 cut(s) 107
Bbv12I GWGCWC 2 cut(s) 374, 491
BbvI GCAGC 4 cut(s) 13, 16, 400, 403
BccI CCATC 3 cut(s) 22, 244, 338
BciVI GTATCC 1 cut(s) 528
BcnI CCSGG 2 cut(s) 384, 385
BfaI CTAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 293
BfuI GTATCC 1 cut(s) 528
BisI GCNGC 4 cut(s) 27, 30, 389, 392
BlsI GCNGC 4 cut(s) 28, 31, 390, 393
Bme1390I CCNGG 2 cut(s) 384, 385
Bme18I GGWCC 3 cut(s) 149, 287, 379
BmeT110I CYCGRG 1 cut(s) 383
BmgBI CACGTC 1 cut(s) 640
BmgT120I GGNCC 3 cut(s) 149, 287, 379
BmiI GGNNCC 5 cut(s) 109, 151, 283, 289, 381
BmrFI CCNGG 2 cut(s) 384, 385
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 2 cut(s) 172, 617
BmuI ACTGGG 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 477
BpuMI CCSGG 2 cut(s) 384, 385
BsaBI GATNNNNATC 2 cut(s) 348, 354
BsaJI CCNNGG 3 cut(s) 382, 383, 451
BsaWI WCCGGW 3 cut(s) 215, 284, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 117, 162, 530
Bse118I RCCGGY 2 cut(s) 284, 329
Bse1I ACTGG 2 cut(s) 97, 300
Bse3DI GCAATG 2 cut(s) 322, 427
Bse8I GATNNNNATC 2 cut(s) 348, 354
BseDI CCNNGG 3 cut(s) 382, 383, 451
BseGI GGATG 1 cut(s) 445
BseJI GATNNNNATC 2 cut(s) 348, 354
BseLI CCNNNNNNNGG 4 cut(s) 103, 117, 162, 530
BseMI GCAATG 2 cut(s) 322, 427
BseNI ACTGG 2 cut(s) 97, 300
BseXI GCAGC 4 cut(s) 13, 16, 400, 403
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 2 cut(s) 284, 329
BsiHKAI GWGCWC 2 cut(s) 374, 491
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 4 cut(s) 216, 285, 330, 384
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 4 cut(s) 103, 117, 162, 530
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 374, 491
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 3 cut(s) 24, 484, 674
BspHI TCATGA 1 cut(s) 621
BspLI GGNNCC 5 cut(s) 109, 151, 283, 289, 381
BspMI ACCTGC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 2 cut(s) 322, 427
BsrFI RCCGGY 2 cut(s) 284, 329
BsrI ACTGG 2 cut(s) 97, 300
BssAI RCCGGY 2 cut(s) 284, 329
BssECI CCNNGG 3 cut(s) 382, 383, 451
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 451
Bst4CI ACNGT 3 cut(s) 319, 652, 686
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 208, 676
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 445
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 3 cut(s) 191, 509, 597
BstSCI CCNGG 2 cut(s) 382, 383
BstV1I GCAGC 4 cut(s) 13, 16, 400, 403
BstXI CCANNNNNNTGG 1 cut(s) 218
BsuI GTATCC 1 cut(s) 528
BtrI CACGTC 1 cut(s) 640
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 691
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 2 cut(s) 208, 676
CaiI CAGNNNCTG 1 cut(s) 103
CciI TCATGA 1 cut(s) 621
Cfr10I RCCGGY 2 cut(s) 284, 329
Cfr13I GGNCC 3 cut(s) 149, 287, 379
Cfr9I CCCGGG 1 cut(s) 383
CseI GACGC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 21, 108, 653
CspAI ACCGGT 2 cut(s) 284, 329
CviAII CATG 5 cut(s) 18, 42, 617, 622, 679
CviJI RGCY 5 cut(s) 5, 210, 278, 394, 512
CviKI_1 RGCY 5 cut(s) 5, 210, 278, 394, 512
CviQI GTAC 3 cut(s) 21, 108, 653
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DrdI GACNNNNNNGTC 1 cut(s) 141
DseDI GACNNNNNNGTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 451
Eco47I GGWCC 3 cut(s) 149, 287, 379
Eco57I CTGAAG 2 cut(s) 46, 293
Eco88I CYCGRG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 5 cut(s) 21, 45, 620, 625, 682
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 1 cut(s) 273
FatI CATG 5 cut(s) 17, 41, 616, 621, 678
FauI CCCGC 1 cut(s) 667
Fnu4HI GCNGC 4 cut(s) 27, 30, 389, 392
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 4 cut(s) 27, 30, 389, 392
FspBI CTAG 1 cut(s) 513
GluI GCNGC 4 cut(s) 27, 30, 389, 392
GsuI CTGGAG 1 cut(s) 477
HapII CCGG 4 cut(s) 216, 285, 330, 384
HgaI GACGC 1 cut(s) 34
Hin1II CATG 5 cut(s) 21, 45, 620, 625, 682
HinfI GANTC 3 cut(s) 198, 355, 447
HpaII CCGG 4 cut(s) 216, 285, 330, 384
HphI GGTGA 4 cut(s) 40, 233, 359, 391
Hpy188I TCNGA 4 cut(s) 273, 309, 354, 360
Hpy188III TCNNGA 4 cut(s) 494, 622, 635, 658
HpyAV CCTTC 5 cut(s) 70, 268, 412, 437, 683
HpyCH4III ACNGT 3 cut(s) 319, 652, 686
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 3 cut(s) 185, 327, 460
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 509, 597
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 639
Hsp92II CATG 5 cut(s) 21, 45, 620, 625, 682
KpnI GGTACC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 369, 509
Lsp1109I GCAGC 4 cut(s) 13, 16, 400, 403
LweI GCATC 2 cut(s) 172, 617
MaeI CTAG 1 cut(s) 513
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 3 cut(s) 46, 313, 642
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 374, 491
MluCI AATT 5 cut(s) 170, 408, 544, 557, 661
MlyI GAGTC 1 cut(s) 456
MmeI TCCRAC 3 cut(s) 78, 95, 445
MnlI CCTC 4 cut(s) 61, 163, 586, 637
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 4 cut(s) 216, 285, 330, 384
MspR9I CCNGG 2 cut(s) 384, 385
Mva1269I GAATGC 1 cut(s) 462
MwoI GCNNNNNNNGC 3 cut(s) 191, 509, 597
NciI CCSGG 2 cut(s) 384, 385
NdeII GATC 1 cut(s) 349
NlaIII CATG 5 cut(s) 21, 45, 620, 625, 682
NlaIV GGNNCC 5 cut(s) 109, 151, 283, 289, 381
NmuCI GTSAC 2 cut(s) 46, 313
PagI TCATGA 1 cut(s) 621
PctI GAATGC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 198, 355
PflMI CCANNNNNTGG 2 cut(s) 103, 162
PinAI ACCGGT 2 cut(s) 284, 329
PkrI GCNGC 4 cut(s) 28, 31, 390, 393
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PpuMI RGGWCCY 1 cut(s) 379
PsiI TTATAA 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 379
PspN4I GGNNCC 5 cut(s) 109, 151, 283, 289, 381
PspPI GGNCC 3 cut(s) 149, 287, 379
PspPPI RGGWCCY 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 3 cut(s) 22, 109, 654
RsaNI GTAC 3 cut(s) 21, 108, 653
SatI GCNGC 4 cut(s) 27, 30, 389, 392
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 3 cut(s) 149, 287, 379
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 2 cut(s) 384, 385
SduI GDGCHC 2 cut(s) 374, 491
SetI ASST 8 cut(s) 53, 192, 307, 404, 514, 585, 629, 642
SfaNI GCATC 2 cut(s) 172, 617
SinI GGWCC 3 cut(s) 149, 287, 379
SmaI CCCGGG 1 cut(s) 385
Sse9I AATT 5 cut(s) 170, 408, 544, 557, 661
SsiI CCGC 3 cut(s) 24, 484, 674
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 382, 383
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 3 cut(s) 319, 652, 686
TaiI ACGT 1 cut(s) 642
TasI AATT 5 cut(s) 170, 408, 544, 557, 661
TfiI GAWTC 2 cut(s) 198, 355
TscAI CASTG 1 cut(s) 691
TseFI GTSAC 2 cut(s) 46, 313
TseI GCWGC 4 cut(s) 26, 29, 388, 391
Tsp45I GTSAC 2 cut(s) 46, 313
TspDTI ATGAA 2 cut(s) 311, 456
TspMI CCCGGG 1 cut(s) 383
TspRI CASTG 1 cut(s) 691
Van91I CCANNNNNTGG 2 cut(s) 103, 162
VpaK11BI GGWCC 3 cut(s) 149, 287, 379
XapI RAATTY 3 cut(s) 170, 557, 661
XmaI CCCGGG 1 cut(s) 383
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.