Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002670.1

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Forward (+)

7852 .. 8820

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002670.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgcggttggacgtagcacagcttattagtacttggcccaagacacgagtggatagaggagtgatcaagctgggaacagtactcaactctcaacagtccactcaggacccagaaatggcttccattccatcatgtaccactgctgcttcccactcatgcctcacctccaactccttcagttctccatcttgttttgtcaaactcaatgcccagtttctgggtacccgaaacaggcagggcagggtcagaccctttggtcttggaccctccaagtgctggttcaaattctgtatagatgcaaaggttgctggaatctacgcaagccaatccggtggtgagtttgataaagataatgtacagcagatgggagtggagaagcaagttctgaaggctggaaccggtcccaaaccggtagcaggtcagaatgtgaccgttcattgcaccggttatggaaaagatggcgatctgaatcagaagttttggagcactaaggaccccgggcagcagcctttcaccttcaaaattgggcaaggcaatgttataaaagggtgggatgaaggagtccttggaatgcaagttggagaagttgctcgtctgcggtgctctccagattatgcttatggagctagtggctttcctgcttgggggatacaacctaattcagttttggattttgagattgaagtactacgattggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

233

Amino Acids

25.3

Weight (kDa)

8.83

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	542
AasI	GACNNNNNNGTC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	407
Acc65I	GGTACC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	2 cut(s)	217, 276
AciI	CCGC	2 cut(s)	4, 598
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	2 cut(s)	160, 407
AfaI	GTAC	6 cut(s)	31, 81, 136, 223, 357, 687
AfiI	CCNNNNNNNGG	6 cut(s)	115, 217, 231, 276, 416, 644
AgeI	ACCGGT	3 cut(s)	398, 409, 443
AgsI	TTSAA	3 cut(s)	283, 520, 683
AjuI	GAANNNNNNNTTGG	4 cut(s)	263, 295, 549, 581
AluBI	AGCT	3 cut(s)	22, 70, 626
AluI	AGCT	3 cut(s)	22, 70, 626
Alw21I	GWGCWC	2 cut(s)	488, 605
AlwNI	CAGNNNCTG	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	3 cut(s)	143, 502, 505
ApoI	RAATTY	1 cut(s)	284
AsiGI	ACCGGT	3 cut(s)	398, 409, 443
Asp718I	GGTACC	1 cut(s)	221
AspS9I	GGNCC	5 cut(s)	36, 106, 263, 401, 493
AsuC2I	CCSGG	2 cut(s)	498, 499
AsuHPI	GGTGA	3 cut(s)	154, 347, 505
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	4 cut(s)	106, 263, 401, 493
BanI	GGYRCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	45
Bbv12I	GWGCWC	2 cut(s)	488, 605
BbvI	GCAGC	3 cut(s)	130, 514, 517
BccI	CCATC	4 cut(s)	136, 193, 358, 452
BciVI	GTATCC	1 cut(s)	642
BclI	TGATCA	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	498, 499
BfaI	CTAG	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	407
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	3 cut(s)	144, 503, 506
BlsI	GCNGC	3 cut(s)	145, 504, 507
BmcAI	AGTACT	3 cut(s)	31, 81, 687
Bme1390I	CCNGG	2 cut(s)	498, 499
Bme18I	GGWCC	4 cut(s)	106, 263, 401, 493
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	5 cut(s)	36, 106, 263, 401, 493
BmiI	GGNNCC	6 cut(s)	108, 223, 265, 397, 403, 495
BmrFI	CCNGG	2 cut(s)	498, 499
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	286
BmuI	ACTGGG	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	591
BpuMI	CCSGG	2 cut(s)	498, 499
BsaBI	GATNNNNATC	2 cut(s)	462, 468
BsaJI	CCNNGG	3 cut(s)	496, 497, 565
BsaWI	WCCGGW	4 cut(s)	329, 398, 409, 443
Bsc4I	CCNNNNNNNGG	6 cut(s)	115, 217, 231, 276, 416, 644
Bse118I	RCCGGY	3 cut(s)	398, 409, 443
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	2 cut(s)	436, 541
Bse8I	GATNNNNATC	2 cut(s)	462, 468
BseDI	CCNNGG	3 cut(s)	496, 497, 565
BseGI	GGATG	1 cut(s)	559
BseJI	GATNNNNATC	2 cut(s)	462, 468
BseLI	CCNNNNNNNGG	6 cut(s)	115, 217, 231, 276, 416, 644
BseMI	GCAATG	2 cut(s)	436, 541
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	130, 514, 517
BseYI	CCCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	221
BshTI	ACCGGT	3 cut(s)	398, 409, 443
BsiHKAI	GWGCWC	2 cut(s)	488, 605
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	5 cut(s)	330, 399, 410, 444, 498
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	6 cut(s)	115, 217, 231, 276, 416, 644
BsmFI	GGGAC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	488, 605
Bsp1407I	TGTACA	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	63, 463
BspACI	CCGC	2 cut(s)	4, 598
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	6 cut(s)	108, 223, 265, 397, 403, 495
BspMI	ACCTGC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	436, 541
BsrFI	RCCGGY	3 cut(s)	398, 409, 443
BsrGI	TGTACA	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	3 cut(s)	398, 409, 443
BssECI	CCNNGG	3 cut(s)	496, 497, 565
BssMI	GATC	2 cut(s)	63, 463
BssSI	CACGAG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	565
Bst2BI	CACGAG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	79, 96, 433
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	102, 489
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	2 cut(s)	66, 466
BstMBI	GATC	2 cut(s)	63, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 623
BstSCI	CCNGG	2 cut(s)	496, 497
BstV1I	GCAGC	3 cut(s)	130, 514, 517
BstXI	CCANNNNNNTGG	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	217
Cfr10I	RCCGGY	3 cut(s)	398, 409, 443
Cfr13I	GGNCC	5 cut(s)	36, 106, 263, 401, 493
Cfr9I	CCCGGG	1 cut(s)	497
Csp6I	GTAC	6 cut(s)	30, 80, 135, 222, 356, 686
CspAI	ACCGGT	3 cut(s)	398, 409, 443
CviAII	CATG	2 cut(s)	132, 156
CviJI	RGCY	9 cut(s)	22, 37, 70, 119, 324, 392, 508, 626, 633
CviKI_1	RGCY	9 cut(s)	22, 37, 70, 119, 324, 392, 508, 626, 633
CviQI	GTAC	6 cut(s)	30, 80, 135, 222, 356, 686
DdeI	CTNAG	2 cut(s)	102, 489
DpnI	GATC	2 cut(s)	65, 465
DpnII	GATC	2 cut(s)	63, 463
DrdI	GACNNNNNNGTC	1 cut(s)	255
DseDI	GACNNNNNNGTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	565
Eco47I	GGWCC	4 cut(s)	106, 263, 401, 493
Eco57I	CTGAAG	2 cut(s)	160, 407
Eco88I	CYCGRG	1 cut(s)	497
EcoO109I	RGGNCCY	2 cut(s)	106, 493
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	2 cut(s)	135, 159
FaiI	YATR	7 cut(s)	133, 157, 293, 450, 542, 615, 621
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	2 cut(s)	131, 155
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	144, 503, 506
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	3 cut(s)	144, 503, 506
FspBI	CTAG	1 cut(s)	627
GluI	GCNGC	3 cut(s)	144, 503, 506
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	5 cut(s)	330, 399, 410, 444, 498
Hin1II	CATG	2 cut(s)	135, 159
HinfI	GANTC	3 cut(s)	312, 469, 561
HpaII	CCGG	5 cut(s)	330, 399, 410, 444, 498
HphI	GGTGA	3 cut(s)	154, 347, 505
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	5 cut(s)	248, 387, 423, 468, 474
Hpy188III	TCNNGA	2 cut(s)	104, 608
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	4 cut(s)	184, 382, 526, 551
HpyCH4III	ACNGT	3 cut(s)	79, 96, 433
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	299, 441, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 623
HpyF3I	CTNAG	2 cut(s)	102, 489
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	135, 159
KpnI	GGTACC	1 cut(s)	225
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	63, 463
LmnI	GCTCC	2 cut(s)	483, 623
Lsp1109I	GCAGC	3 cut(s)	130, 514, 517
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	65, 465
MboI	GATC	2 cut(s)	63, 463
MhlI	GDGCHC	2 cut(s)	488, 605
MluCI	AATT	3 cut(s)	284, 522, 658
MlyI	GAGTC	1 cut(s)	570
MmeI	TCCRAC	2 cut(s)	192, 559
MnlI	CCTC	4 cut(s)	50, 170, 175, 277
MspI	CCGG	5 cut(s)	330, 399, 410, 444, 498
MspR9I	CCNGG	2 cut(s)	498, 499
Mva1269I	GAATGC	1 cut(s)	576
MwoI	GCNNNNNNNGC	2 cut(s)	305, 623
NciI	CCSGG	2 cut(s)	498, 499
NdeII	GATC	2 cut(s)	63, 463
NlaIII	CATG	2 cut(s)	135, 159
NlaIV	GGNNCC	6 cut(s)	108, 223, 265, 397, 403, 495
NmuCI	GTSAC	1 cut(s)	427
PctI	GAATGC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	312, 469
PflMI	CCANNNNNTGG	2 cut(s)	217, 276
PinAI	ACCGGT	3 cut(s)	398, 409, 443
PkrI	GCNGC	3 cut(s)	145, 504, 507
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
PpuMI	RGGWCCY	2 cut(s)	106, 493
PsiI	TTATAA	1 cut(s)	542
Psp5II	RGGWCCY	2 cut(s)	106, 493
PspFI	CCCAGC	1 cut(s)	70
PspN4I	GGNNCC	6 cut(s)	108, 223, 265, 397, 403, 495
PspPI	GGNCC	5 cut(s)	36, 106, 263, 401, 493
PspPPI	RGGWCCY	2 cut(s)	106, 493
PstNI	CAGNNNCTG	1 cut(s)	217
RsaI	GTAC	6 cut(s)	31, 81, 136, 223, 357, 687
RsaNI	GTAC	6 cut(s)	30, 80, 135, 222, 356, 686
SatI	GCNGC	3 cut(s)	144, 503, 506
Sau3AI	GATC	2 cut(s)	63, 463
Sau96I	GGNCC	5 cut(s)	36, 106, 263, 401, 493
ScaI	AGTACT	3 cut(s)	31, 81, 687
SchI	GAGTC	1 cut(s)	570
ScrFI	CCNGG	2 cut(s)	498, 499
SduI	GDGCHC	2 cut(s)	488, 605
SetI	ASST	9 cut(s)	15, 24, 72, 167, 306, 421, 518, 628, 658
SfaNI	GCATC	1 cut(s)	286
SinI	GGWCC	4 cut(s)	106, 263, 401, 493
SmaI	CCCGGG	1 cut(s)	499
Sse9I	AATT	3 cut(s)	284, 522, 658
SsiI	CCGC	2 cut(s)	4, 598
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	496, 497
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	3 cut(s)	79, 96, 433
TaiI	ACGT	1 cut(s)	15
TasI	AATT	3 cut(s)	284, 522, 658
TatI	WGTACW	4 cut(s)	29, 79, 355, 685
TfiI	GAWTC	2 cut(s)	312, 469
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	3 cut(s)	143, 502, 505
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	425, 570
TspMI	CCCGGG	1 cut(s)	497
TspRI	CASTG	1 cut(s)	145
Van91I	CCANNNNNTGG	2 cut(s)	217, 276
VpaK11BI	GGWCC	4 cut(s)	106, 263, 401, 493
XapI	RAATTY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmaI	CCCGGG	1 cut(s)	497
XspI	CTAG	1 cut(s)	627
ZrmI	AGTACT	3 cut(s)	31, 81, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.