Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Forward (+)

61123422 .. 61129601

Gene Structure 6180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCTTCCATTCCATGTACTACTGCTCCTACCCACTCATGCTTCGCCTCCAACTCTATCAATTCTTCAACTTTTTCGGTCAAACTCAATACCCAGTTTCTGGGTACCCGAAGTAGGCTGGGTCGGGTCAGACCCTTTGGTCTTGGACCCTCCAATGGCTCCAGAGCCAAGTGCTGGTTCAAGTTCGGTAAAAACGGTATAGATGCTGAGGGTGCTGGAATCTATGGAAGCCAATCCCGTGATGATTATGACAAAGATGATGTTGAGCAGATGGGAGTGGAGAAGCAAGTTCTGAGGGCTGGAACTGGTCCAAAACCAGTAGCAGGTCAGAAGGTTACCGTTCACTGCTCCGGTTATGGAAAAAATGGTGATTTGAATCAGAAGTTTTGGAGCACCAAGGACCCTGGGCAGCAGCCTTTCACCTTCAAAATTGGCCAAGGTTCTGTCATAAAAGGATGGGATGGAGGTATCCTTGGAATGCAAGTTGGAGAAGTTGCTCGTCTGTGGTGCTCTTCTGATTATGCTTATGGACCTAGTGGATTTCCAGCCTGGGGCATACAACCTAATTCAGTTTTGGTCTTTGAGATTGAACTACTAAGAGTTGGAATATCTGCAAATCTATACGATATTCTAAGGCAGTATTTCAACTACATGGGAATGCTTGCTGTTGAGGGTACGTATGATAAGATGAATGCTCTTTTAAGCCAAAATATCCACCCAGTAGATATTCTATTGTTGATGGCTGCCTCAGAAGGTGACAAGCCGAAAATTGAAGAACTTTTAAGAGCCGGAGCTAGTTACTCTGTTAAAGATGCTGATGGGCGAACAGCTCTTGATAGGGCTGCAAGTGATGAAATTAAAGACTTCATTCTTGAGCCGACCCAGAAGTTGGTTTTCTCAGACGAGCACAAAGCCACCATCTTTGCTGCAGATCCAAGCTCAGAACCAAGATCAGGTCGCATATATGTGATCGACACAAAAACAGATCCAGAAGCTCCCTCTCTGCATAAAGTTGTTGACCCTGAAGACATCGTACAAAAGATTGGATTGGCATACCCACACACATCTCACTGCCTTGCATCTGGTGATTTCTTCTCCTTGACTAGTTTAATGTCAAGGGAAGGTTTATCGTCTGGGAGACTGTCACCTCTTTTATCGAAAATGTCCAAGATAACTGTGTTTCTTTGTCAAGTCATTGTATCTGATGAACTCTGGCTTGGCCTTGACACCTGCTACCACAGTTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

416

Amino Acids

45.33

Weight (kDa)

5.96

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	105 - 199	2.1e-23	FKBP-type peptidyl-prolyl cis-trans isomerase
SBP56	PF05694	317 - 381	4.2e-15	56kDa selenium binding protein (SBP56)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1238
AasI	GACNNNNNNGTC	1 cut(s)	138
Acc36I	ACCTGC	2 cut(s)	314, 1238
Acc65I	GGTACC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	4 cut(s)	100, 174, 889, 1243
AclWI	GGATC	2 cut(s)	926, 980
AcoI	YGGCCR	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	1044
AfaI	GTAC	4 cut(s)	19, 106, 676, 1035
AfiI	CCNNNNNNNGG	9 cut(s)	100, 114, 155, 174, 323, 551, 889, 953, 1243
AgsI	TTSAA	7 cut(s)	69, 181, 376, 427, 590, 646, 773
AhlI	ACTAGT	1 cut(s)	1103
AjnI	CCWGG	2 cut(s)	403, 548
AjuI	GAANNNNNNNTTGG	4 cut(s)	161, 193, 1200, 1232
AluBI	AGCT	4 cut(s)	794, 830, 939, 995
AluI	AGCT	4 cut(s)	794, 830, 939, 995
Alw21I	GWGCWC	3 cut(s)	395, 512, 909
Alw26I	GTCTC	1 cut(s)	1132
AlwI	GGATC	2 cut(s)	926, 980
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	2 cut(s)	433, 1219
ApeKI	GCWGC	5 cut(s)	409, 412, 743, 842, 926
Asp718I	GGTACC	1 cut(s)	104
AspS9I	GGNCC	4 cut(s)	146, 308, 400, 530
AsuHPI	GGTGA	5 cut(s)	380, 412, 767, 1097, 1137
AvaII	GGWCC	4 cut(s)	146, 308, 400, 530
BalI	TGGCCA	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	104
BarI	GAAGNNNNNNTAC	2 cut(s)	1017, 1049
BbsI	GAAGAC	1 cut(s)	1032
Bbv12I	GWGCWC	3 cut(s)	395, 512, 909
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	421, 424, 730, 829, 913
BccI	CCATC	6 cut(s)	265, 450, 455, 733, 812, 926
BciT130I	CCWGG	2 cut(s)	405, 550
BciVI	GTATCC	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	1132
BcuI	ACTAGT	1 cut(s)	1103
BfaI	CTAG	3 cut(s)	534, 795, 1104
BfmI	CTRYAG	1 cut(s)	927
BfuAI	ACCTGC	2 cut(s)	314, 1238
BfuI	GTATCC	1 cut(s)	479
BisI	GCNGC	5 cut(s)	410, 413, 744, 843, 927
BlsI	GCNGC	5 cut(s)	411, 414, 745, 844, 928
Bme1390I	CCNGG	2 cut(s)	405, 550
Bme18I	GGWCC	4 cut(s)	146, 308, 400, 530
BmgT120I	GGNCC	4 cut(s)	146, 308, 400, 530
BmiI	GGNNCC	4 cut(s)	106, 148, 160, 402
BmrFI	CCNGG	2 cut(s)	405, 550
BmrI	ACTGGG	2 cut(s)	88, 713
BmsI	GCATC	3 cut(s)	193, 802, 1088
BmuI	ACTGGG	2 cut(s)	88, 713
BpiI	GAAGAC	1 cut(s)	1032
BpmI	CTGGAG	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	893
BsaAI	YACGTR	1 cut(s)	678
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	6 cut(s)	396, 403, 404, 436, 472, 549
BsaWI	WCCGGW	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	9 cut(s)	100, 114, 155, 174, 323, 551, 889, 953, 1243
Bse1I	ACTGG	4 cut(s)	94, 310, 317, 719
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	405, 550
BseDI	CCNNGG	6 cut(s)	396, 403, 404, 436, 472, 549
BseGI	GGATG	2 cut(s)	461, 466
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	9 cut(s)	100, 114, 155, 174, 323, 551, 889, 953, 1243
BseMII	CTCAG	5 cut(s)	198, 284, 762, 912, 954
BseNI	ACTGG	4 cut(s)	94, 310, 317, 719
BseXI	GCAGC	5 cut(s)	421, 424, 730, 829, 913
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	2 cut(s)	435, 1221
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	3 cut(s)	395, 512, 909
BsiSI	CCGG	2 cut(s)	351, 789
BslI	CCNNNNNNNGG	9 cut(s)	100, 114, 155, 174, 323, 551, 889, 953, 1243
BsmAI	GTCTC	1 cut(s)	1132
BsmI	GAATGC	3 cut(s)	483, 663, 697
BsnI	GGCC	2 cut(s)	435, 1221
Bsp1286I	GDGCHC	3 cut(s)	395, 512, 909
Bsp143I	GATC	4 cut(s)	931, 950, 969, 985
BspANI	GGCC	2 cut(s)	435, 1221
BspCNI	CTCAG	5 cut(s)	199, 285, 761, 911, 953
BspLI	GGNNCC	4 cut(s)	106, 148, 160, 402
BspMAI	CTGCAG	1 cut(s)	931
BspMI	ACCTGC	2 cut(s)	314, 1238
BspPI	GGATC	2 cut(s)	926, 980
BspQI	GCTCTTC	1 cut(s)	517
BspT107I	GGYRCC	1 cut(s)	104
BsrI	ACTGG	4 cut(s)	94, 310, 317, 719
BssECI	CCNNGG	6 cut(s)	396, 403, 404, 436, 472, 549
BssMI	GATC	4 cut(s)	931, 950, 969, 985
BssT1I	CCWWGG	3 cut(s)	396, 436, 472
Bst2UI	CCWGG	2 cut(s)	405, 550
Bst4CI	ACNGT	5 cut(s)	197, 340, 1143, 1177, 1241
Bst6I	CTCTTC	1 cut(s)	517
BstBAI	YACGTR	1 cut(s)	678
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	7 cut(s)	207, 293, 596, 632, 748, 898, 940
BstEII	GGTNACC	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	461, 466
BstKTI	GATC	4 cut(s)	934, 953, 972, 988
BstMAI	GTCTC	1 cut(s)	1132
BstMBI	GATC	4 cut(s)	931, 950, 969, 985
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	2 cut(s)	405, 550
BstPI	GGTNACC	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	403, 548
BstSFI	CTRYAG	1 cut(s)	927
BstSNI	TACGTA	1 cut(s)	678
BstV1I	GCAGC	5 cut(s)	421, 424, 730, 829, 913
BstV2I	GAAGAC	1 cut(s)	1032
BstX2I	RGATCY	2 cut(s)	931, 985
BstYI	RGATCY	2 cut(s)	931, 985
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	435, 1221
BtsCI	GGATG	2 cut(s)	461, 466
BtsI	GCAGTG	2 cut(s)	343, 1069
BtsIMutI	CAGTG	2 cut(s)	343, 1069
BveI	ACCTGC	2 cut(s)	314, 1238
Cac8I	GCNNGC	1 cut(s)	663
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr13I	GGNCC	4 cut(s)	146, 308, 400, 530
Csp6I	GTAC	4 cut(s)	18, 105, 675, 1034
CspCI	CAANNNNNGTGG	2 cut(s)	904, 939
CviAII	CATG	3 cut(s)	15, 39, 652
CviQI	GTAC	4 cut(s)	18, 105, 675, 1034
DdeI	CTNAG	7 cut(s)	207, 293, 596, 632, 748, 898, 940
DpnI	GATC	4 cut(s)	933, 952, 971, 987
DpnII	GATC	4 cut(s)	931, 950, 969, 985
DrdI	GACNNNNNNGTC	1 cut(s)	138
DseDI	GACNNNNNNGTC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	517
EarI	CTCTTC	1 cut(s)	517
Eco105I	TACGTA	1 cut(s)	678
Eco130I	CCWWGG	3 cut(s)	396, 436, 472
Eco47I	GGWCC	4 cut(s)	146, 308, 400, 530
Eco57I	CTGAAG	1 cut(s)	1044
Eco91I	GGTNACC	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	400
EcoO65I	GGTNACC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	403, 548
EcoT14I	CCWWGG	3 cut(s)	396, 436, 472
ErhI	CCWWGG	3 cut(s)	396, 436, 472
FaeI	CATG	3 cut(s)	18, 42, 655
FatI	CATG	3 cut(s)	14, 38, 651
Fnu4HI	GCNGC	5 cut(s)	410, 413, 744, 843, 927
FokI	GGATG	2 cut(s)	468, 473
Fsp4HI	GCNGC	5 cut(s)	410, 413, 744, 843, 927
FspBI	CTAG	3 cut(s)	534, 795, 1104
GluI	GCNGC	5 cut(s)	410, 413, 744, 843, 927
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	435, 1221
HapII	CCGG	2 cut(s)	351, 789
Hin1II	CATG	3 cut(s)	18, 42, 655
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HinfI	GANTC	2 cut(s)	219, 376
HpaII	CCGG	2 cut(s)	351, 789
HphI	GGTGA	5 cut(s)	380, 412, 767, 1097, 1137
Hpy166II	GTNNAC	2 cut(s)	343, 1018
Hpy188I	TCNGA	9 cut(s)	131, 294, 330, 381, 517, 751, 901, 943, 1204
Hpy188III	TCNNGA	4 cut(s)	162, 833, 872, 989
Hpy8I	GTNNAC	2 cut(s)	343, 1018
HpyAV	CCTTC	4 cut(s)	325, 433, 746, 1115
HpyCH4III	ACNGT	5 cut(s)	197, 340, 1143, 1177, 1241
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	6 cut(s)	481, 614, 845, 929, 1006, 1079
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	7 cut(s)	207, 293, 596, 632, 748, 898, 940
HpySE526I	ACGT	1 cut(s)	677
Hsp92II	CATG	3 cut(s)	18, 42, 655
KpnI	GGTACC	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	931, 950, 969, 985
LguI	GCTCTTC	1 cut(s)	517
LmnI	GCTCC	6 cut(s)	31, 164, 353, 390, 791, 1000
Lsp1109I	GCAGC	5 cut(s)	421, 424, 730, 829, 913
LweI	GCATC	3 cut(s)	193, 802, 1088
MaeI	CTAG	3 cut(s)	534, 795, 1104
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	4 cut(s)	334, 755, 797, 1143
MalI	GATC	4 cut(s)	933, 952, 971, 987
MboI	GATC	4 cut(s)	931, 950, 969, 985
MboII	GAAGA	5 cut(s)	57, 504, 785, 1037, 1084
MflI	RGATCY	2 cut(s)	931, 985
MhlI	GDGCHC	3 cut(s)	395, 512, 909
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	5 cut(s)	61, 429, 565, 768, 855
MluNI	TGGCCA	1 cut(s)	435
MmeI	TCCRAC	3 cut(s)	75, 466, 583
MnlI	CCTC	9 cut(s)	58, 160, 202, 288, 458, 664, 757, 1009, 1158
Mox20I	TGGCCA	1 cut(s)	435
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	5 cut(s)	701, 782, 807, 858, 1109
MslI	CAYNNNNRTG	2 cut(s)	656, 965
Msp20I	TGGCCA	1 cut(s)	435
MspI	CCGG	2 cut(s)	351, 789
MspR9I	CCNGG	2 cut(s)	405, 550
Mva1269I	GAATGC	3 cut(s)	483, 663, 697
MvaI	CCWGG	2 cut(s)	405, 550
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	4 cut(s)	931, 950, 969, 985
NlaIII	CATG	3 cut(s)	18, 42, 655
NlaIV	GGNNCC	4 cut(s)	106, 148, 160, 402
NmuCI	GTSAC	2 cut(s)	755, 1143
PaqCI	CACCTGC	1 cut(s)	1238
PasI	CCCWGGG	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	517
PctI	GAATGC	3 cut(s)	483, 663, 697
PfeI	GAWTC	2 cut(s)	219, 376
PflMI	CCANNNNNTGG	4 cut(s)	100, 174, 889, 1243
PkrI	GCNGC	5 cut(s)	411, 414, 745, 844, 928
Ppu21I	YACGTR	1 cut(s)	678
PpuMI	RGGWCCY	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	403, 548
PspEI	GGTNACC	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	2 cut(s)	403, 548
PspN4I	GGNNCC	4 cut(s)	106, 148, 160, 402
PspPI	GGNCC	4 cut(s)	146, 308, 400, 530
PspPPI	RGGWCCY	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	931
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	931, 985
RsaI	GTAC	4 cut(s)	19, 106, 676, 1035
RsaNI	GTAC	4 cut(s)	18, 105, 675, 1034
RseI	CAYNNNNRTG	2 cut(s)	656, 965
SapI	GCTCTTC	1 cut(s)	517
SaqAI	TTAA	5 cut(s)	701, 782, 807, 858, 1109
SatI	GCNGC	5 cut(s)	410, 413, 744, 843, 927
Sau3AI	GATC	4 cut(s)	931, 950, 969, 985
Sau96I	GGNCC	4 cut(s)	146, 308, 400, 530
ScrFI	CCNGG	2 cut(s)	405, 550
SduI	GDGCHC	3 cut(s)	395, 512, 909
SfaNI	GCATC	3 cut(s)	193, 802, 1088
SfcI	CTRYAG	1 cut(s)	927
SinI	GGWCC	4 cut(s)	146, 308, 400, 530
SmiMI	CAYNNNNRTG	2 cut(s)	656, 965
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
SnaBI	TACGTA	1 cut(s)	678
SpeI	ACTAGT	1 cut(s)	1103
Sse9I	AATT	5 cut(s)	61, 429, 565, 768, 855
SspMI	CTAG	3 cut(s)	534, 795, 1104
StyD4I	CCNGG	2 cut(s)	403, 548
StyI	CCWWGG	3 cut(s)	396, 436, 472
TaaI	ACNGT	5 cut(s)	197, 340, 1143, 1177, 1241
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	2 cut(s)	972, 1157
TaqII	GACCGA	1 cut(s)	67
TasI	AATT	5 cut(s)	61, 429, 565, 768, 855
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	219, 376
Tru1I	TTAA	5 cut(s)	701, 782, 807, 858, 1109
Tru9I	TTAA	5 cut(s)	701, 782, 807, 858, 1109
TscAI	CASTG	2 cut(s)	350, 1076
TseFI	GTSAC	2 cut(s)	755, 1143
TseI	GCWGC	5 cut(s)	409, 412, 743, 842, 926
Tsp45I	GTSAC	2 cut(s)	755, 1143
TspDTI	ATGAA	4 cut(s)	704, 856, 867, 1221
TspRI	CASTG	2 cut(s)	350, 1076
Van91I	CCANNNNNTGG	4 cut(s)	100, 174, 889, 1243
VpaK11BI	GGWCC	4 cut(s)	146, 308, 400, 530
XspI	CTAG	3 cut(s)	534, 795, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.