Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Forward (+)

61120079 .. 61122265

Gene Structure 2187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGAGTGGAGAAGCAAGTTCTGAAGGCTGGAACCGGTCCCAAACCGGTAGCAGGTCAGAATGTGACCGTTCATTGCACCGGTTATGGAAAAGATGGTGATCTGAATCAGAAGTTTTGGAGCACTAAGGATCCCGGGCAGCAGCCTTTCACCTTCAAAATTGGGCAAGGCAATGTTATAAAAGGGTGGGATGAAGGAGTCCTTGGAATGCAAGTTGGAGAAGTTGCTCGTCTGCGATGCTCTCCAGATTATGCTTATGGAGCTAGTGGATTTCCTGCTTGGGGGATACAACCTAATTCAGTTTTGGATTTTGAGATTGAAGTACTACGATTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

112

Amino Acids

12.11

Weight (kDa)

5.79

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	15 - 109	4.4e-26	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	125, 138
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	2 cut(s)	53, 281
AgeI	ACCGGT	3 cut(s)	35, 46, 80
AgsI	TTSAA	2 cut(s)	157, 320
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw21I	GWGCWC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	125, 138
Ama87I	CYCGRG	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	139, 142
AsiGI	ACCGGT	3 cut(s)	35, 46, 80
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	2 cut(s)	135, 136
AsuHPI	GGTGA	2 cut(s)	110, 142
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	151, 154
BccI	CCATC	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	279
BcnI	CCSGG	2 cut(s)	135, 136
BfaI	CTAG	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	140, 143
BlsI	GCNGC	2 cut(s)	141, 144
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	2 cut(s)	135, 136
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	3 cut(s)	34, 40, 132
BmrFI	CCNGG	2 cut(s)	135, 136
BmsI	GCATC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	228
BpuMI	CCSGG	2 cut(s)	135, 136
BsaBI	GATNNNNATC	2 cut(s)	99, 105
BsaJI	CCNNGG	2 cut(s)	134, 202
BsaWI	WCCGGW	3 cut(s)	35, 46, 80
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 281
Bse118I	RCCGGY	3 cut(s)	35, 46, 80
Bse3DI	GCAATG	2 cut(s)	73, 178
Bse8I	GATNNNNATC	2 cut(s)	99, 105
BseDI	CCNNGG	2 cut(s)	134, 202
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	2 cut(s)	99, 105
BseLI	CCNNNNNNNGG	2 cut(s)	53, 281
BseMI	GCAATG	2 cut(s)	73, 178
BseXI	GCAGC	2 cut(s)	151, 154
BshTI	ACCGGT	3 cut(s)	35, 46, 80
BsiHKAI	GWGCWC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	4 cut(s)	36, 47, 81, 135
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	53, 281
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	100, 130
BspLI	GGNNCC	3 cut(s)	34, 40, 132
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	125, 138
BsrDI	GCAATG	2 cut(s)	73, 178
BsrFI	RCCGGY	3 cut(s)	35, 46, 80
BssAI	RCCGGY	3 cut(s)	35, 46, 80
BssECI	CCNNGG	2 cut(s)	134, 202
BssMI	GATC	2 cut(s)	100, 130
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	103, 133
BstMBI	GATC	2 cut(s)	100, 130
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	133, 134
BstV1I	GCAGC	2 cut(s)	151, 154
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	44
Cfr10I	RCCGGY	3 cut(s)	35, 46, 80
Cfr13I	GGNCC	1 cut(s)	38
Cfr9I	CCCGGG	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	323
CspAI	ACCGGT	3 cut(s)	35, 46, 80
CviJI	RGCY	3 cut(s)	29, 145, 263
CviKI_1	RGCY	3 cut(s)	29, 145, 263
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	102, 132
DpnII	GATC	2 cut(s)	100, 130
Eco130I	CCWWGG	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaiI	YATR	4 cut(s)	87, 179, 252, 258
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	140, 143
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	140, 143
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	2 cut(s)	140, 143
GsuI	CTGGAG	1 cut(s)	228
HapII	CCGG	4 cut(s)	36, 47, 81, 135
HinfI	GANTC	2 cut(s)	106, 198
HpaII	CCGG	4 cut(s)	36, 47, 81, 135
HphI	GGTGA	2 cut(s)	110, 142
Hpy188I	TCNGA	4 cut(s)	24, 60, 105, 111
Hpy188III	TCNNGA	1 cut(s)	245
HpyAV	CCTTC	3 cut(s)	19, 163, 188
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	78, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	100, 130
LmnI	GCTCC	2 cut(s)	120, 260
LpnPI	CCDG	8 cut(s)	15, 39, 49, 60, 94, 148, 258, 288
Lsp1109I	GCAGC	2 cut(s)	151, 154
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	102, 132
MboI	GATC	2 cut(s)	100, 130
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	2 cut(s)	159, 295
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	196
MspI	CCGG	4 cut(s)	36, 47, 81, 135
MspR9I	CCNGG	2 cut(s)	135, 136
Mva1269I	GAATGC	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	2 cut(s)	135, 136
NdeII	GATC	2 cut(s)	100, 130
NlaIV	GGNNCC	3 cut(s)	34, 40, 132
NmuCI	GTSAC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	106
PinAI	ACCGGT	3 cut(s)	35, 46, 80
PkrI	GCNGC	2 cut(s)	141, 144
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PsiI	TTATAA	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	34, 40, 132
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SatI	GCNGC	2 cut(s)	140, 143
Sau3AI	GATC	2 cut(s)	100, 130
Sau96I	GGNCC	1 cut(s)	38
ScaI	AGTACT	1 cut(s)	324
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	135, 136
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	4 cut(s)	58, 155, 265, 295
SfaNI	GCATC	1 cut(s)	227
SinI	GGWCC	1 cut(s)	38
SmaI	CCCGGG	1 cut(s)	136
Sse9I	AATT	2 cut(s)	159, 295
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	133, 134
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	70
TasI	AATT	2 cut(s)	159, 295
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	139, 142
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	62, 207
TspMI	CCCGGG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	38
XmaI	CCCGGG	1 cut(s)	134
XspI	CTAG	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.