Rh5DG271200

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005690
Physical Location & Seq
Reverse (-)
33013292 .. 33015344
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG271200.1

Sequence Viewer

Length: 588 bp
ATGGCTTCCATTCCATCATGTACCACTGCTGCTTCCCGCTCATGCCTCACCTCCAACTCCTTCAGTTCTCCATCTTGTTTTGTCAAACTCAATGCCCAGTTTCTGGGTACCCGAAACAGGCAGGGCAGGGTCAGACCCTTTGGTCTTGGACCCTCCAAGTGCTGGTTCAAATTCTGTATAGATGCAAAGGTTGCTGGAATCTACGCAAGCCAATCCGGTGGTGAGTTTGATAAAGATAATGTACAGCAGATGGGAGTGGAGAAGCAAGTTCTGAAGGCTGGAACCGGTCCCAAACCGGTAGCAGGTCAGAATGTGACCGTTCATTGCACCGGTTATGGAAAAGATGGTGATCTGAATCAGAAGTTTTGGAGCACTAAGGACCCCGGGCAGCAGCCTTTCACCTTCAAAATTGGGCAAGGCAATGTTATAAAAGGGTGGGATGAAGGAGTCCTTGGAATGCAAGTTGGAGAAGTTGCTCGTCTGCGGTGCTCTCCAGATTATGCTTATGGAGCTAGTGGATTTCCTGCTTGGGGGATACAACCTAATTCAGTTTTGGATTTTGAGATTGAAGTACTACGATTGGAGTGA

Protein Analysis

195

Amino Acids

21.06

Weight (kDa)

8.85

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 98 - 192 2.4e-25 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AasI GACNNNNNNGTC 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 293
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 107
AccB7I CCANNNNNTGG 2 cut(s) 103, 162
AccBSI CCGCTC 1 cut(s) 39
AciI CCGC 2 cut(s) 37, 484
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 2 cut(s) 46, 293
AfaI GTAC 4 cut(s) 22, 109, 243, 573
AfiI CCNNNNNNNGG 5 cut(s) 103, 117, 162, 302, 530
AgeI ACCGGT 3 cut(s) 284, 295, 329
AgsI TTSAA 3 cut(s) 169, 406, 569
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 435, 467
AluBI AGCT 1 cut(s) 512
AluI AGCT 1 cut(s) 512
Alw21I GWGCWC 2 cut(s) 374, 491
AlwNI CAGNNNCTG 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 383
ApeKI GCWGC 3 cut(s) 29, 388, 391
ApoI RAATTY 1 cut(s) 170
AsiGI ACCGGT 3 cut(s) 284, 295, 329
Asp718I GGTACC 1 cut(s) 107
AspS9I GGNCC 3 cut(s) 149, 287, 379
AsuC2I CCSGG 2 cut(s) 384, 385
AsuHPI GGTGA 4 cut(s) 40, 233, 359, 391
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 3 cut(s) 149, 287, 379
BanI GGYRCC 1 cut(s) 107
Bbv12I GWGCWC 2 cut(s) 374, 491
BbvI GCAGC 3 cut(s) 16, 400, 403
BccI CCATC 4 cut(s) 22, 79, 244, 338
BciVI GTATCC 1 cut(s) 528
BcnI CCSGG 2 cut(s) 384, 385
BfaI CTAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 293
BfuI GTATCC 1 cut(s) 528
BisI GCNGC 3 cut(s) 30, 389, 392
BlsI GCNGC 3 cut(s) 31, 390, 393
BmcAI AGTACT 1 cut(s) 573
Bme1390I CCNGG 2 cut(s) 384, 385
Bme18I GGWCC 3 cut(s) 149, 287, 379
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 3 cut(s) 149, 287, 379
BmiI GGNNCC 5 cut(s) 109, 151, 283, 289, 381
BmrFI CCNGG 2 cut(s) 384, 385
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 477
BpuMI CCSGG 2 cut(s) 384, 385
BsaBI GATNNNNATC 2 cut(s) 348, 354
BsaJI CCNNGG 3 cut(s) 382, 383, 451
BsaWI WCCGGW 4 cut(s) 215, 284, 295, 329
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 117, 162, 302, 530
Bse118I RCCGGY 3 cut(s) 284, 295, 329
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 2 cut(s) 322, 427
Bse8I GATNNNNATC 2 cut(s) 348, 354
BseDI CCNNGG 3 cut(s) 382, 383, 451
BseGI GGATG 1 cut(s) 445
BseJI GATNNNNATC 2 cut(s) 348, 354
BseLI CCNNNNNNNGG 5 cut(s) 103, 117, 162, 302, 530
BseMI GCAATG 2 cut(s) 322, 427
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 3 cut(s) 16, 400, 403
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 3 cut(s) 284, 295, 329
BsiHKAI GWGCWC 2 cut(s) 374, 491
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 5 cut(s) 216, 285, 296, 330, 384
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 5 cut(s) 103, 117, 162, 302, 530
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 374, 491
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 2 cut(s) 37, 484
BspLI GGNNCC 5 cut(s) 109, 151, 283, 289, 381
BspMI ACCTGC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 39
BsrDI GCAATG 2 cut(s) 322, 427
BsrFI RCCGGY 3 cut(s) 284, 295, 329
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 97
BssAI RCCGGY 3 cut(s) 284, 295, 329
BssECI CCNNGG 3 cut(s) 382, 383, 451
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 451
Bst4CI ACNGT 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 445
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 2 cut(s) 191, 509
BstSCI CCNGG 2 cut(s) 382, 383
BstV1I GCAGC 3 cut(s) 16, 400, 403
BstXI CCANNNNNNTGG 1 cut(s) 218
BsuI GTATCC 1 cut(s) 528
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 208
CaiI CAGNNNCTG 1 cut(s) 103
Cfr10I RCCGGY 3 cut(s) 284, 295, 329
Cfr13I GGNCC 3 cut(s) 149, 287, 379
Cfr9I CCCGGG 1 cut(s) 383
Csp6I GTAC 4 cut(s) 21, 108, 242, 572
CspAI ACCGGT 3 cut(s) 284, 295, 329
CviAII CATG 2 cut(s) 18, 42
CviJI RGCY 5 cut(s) 5, 210, 278, 394, 512
CviKI_1 RGCY 5 cut(s) 5, 210, 278, 394, 512
CviQI GTAC 4 cut(s) 21, 108, 242, 572
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DrdI GACNNNNNNGTC 1 cut(s) 141
DseDI GACNNNNNNGTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 451
Eco47I GGWCC 3 cut(s) 149, 287, 379
Eco57I CTGAAG 2 cut(s) 46, 293
Eco88I CYCGRG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 2 cut(s) 21, 45
FaiI YATR 7 cut(s) 19, 43, 179, 336, 428, 501, 507
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 1 cut(s) 273
FatI CATG 2 cut(s) 17, 41
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 30, 389, 392
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 3 cut(s) 30, 389, 392
FspBI CTAG 1 cut(s) 513
GluI GCNGC 3 cut(s) 30, 389, 392
GsuI CTGGAG 1 cut(s) 477
HapII CCGG 5 cut(s) 216, 285, 296, 330, 384
Hin1II CATG 2 cut(s) 21, 45
HinfI GANTC 3 cut(s) 198, 355, 447
HpaII CCGG 5 cut(s) 216, 285, 296, 330, 384
HphI GGTGA 4 cut(s) 40, 233, 359, 391
Hpy188I TCNGA 5 cut(s) 134, 273, 309, 354, 360
Hpy188III TCNNGA 1 cut(s) 494
HpyAV CCTTC 4 cut(s) 70, 268, 412, 437
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 185, 327, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 509
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 2 cut(s) 21, 45
KpnI GGTACC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 369, 509
Lsp1109I GCAGC 3 cut(s) 16, 400, 403
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 351
MbiI CCGCTC 1 cut(s) 39
MboI GATC 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 374, 491
MluCI AATT 3 cut(s) 170, 408, 544
MlyI GAGTC 1 cut(s) 456
MmeI TCCRAC 2 cut(s) 78, 445
MnlI CCTC 3 cut(s) 56, 61, 163
MspI CCGG 5 cut(s) 216, 285, 296, 330, 384
MspR9I CCNGG 2 cut(s) 384, 385
Mva1269I GAATGC 1 cut(s) 462
MwoI GCNNNNNNNGC 2 cut(s) 191, 509
NciI CCSGG 2 cut(s) 384, 385
NdeII GATC 1 cut(s) 349
NlaIII CATG 2 cut(s) 21, 45
NlaIV GGNNCC 5 cut(s) 109, 151, 283, 289, 381
NmuCI GTSAC 1 cut(s) 313
PctI GAATGC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 198, 355
PflMI CCANNNNNTGG 2 cut(s) 103, 162
PinAI ACCGGT 3 cut(s) 284, 295, 329
PkrI GCNGC 3 cut(s) 31, 390, 393
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PpuMI RGGWCCY 1 cut(s) 379
PsiI TTATAA 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 379
PspN4I GGNNCC 5 cut(s) 109, 151, 283, 289, 381
PspPI GGNCC 3 cut(s) 149, 287, 379
PspPPI RGGWCCY 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 4 cut(s) 22, 109, 243, 573
RsaNI GTAC 4 cut(s) 21, 108, 242, 572
SatI GCNGC 3 cut(s) 30, 389, 392
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 3 cut(s) 149, 287, 379
ScaI AGTACT 1 cut(s) 573
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 2 cut(s) 384, 385
SduI GDGCHC 2 cut(s) 374, 491
SetI ASST 6 cut(s) 53, 192, 307, 404, 514, 544
SfaNI GCATC 1 cut(s) 172
SinI GGWCC 3 cut(s) 149, 287, 379
SmaI CCCGGG 1 cut(s) 385
Sse9I AATT 3 cut(s) 170, 408, 544
SsiI CCGC 2 cut(s) 37, 484
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 382, 383
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 1 cut(s) 319
TasI AATT 3 cut(s) 170, 408, 544
TatI WGTACW 2 cut(s) 241, 571
TfiI GAWTC 2 cut(s) 198, 355
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 3 cut(s) 29, 388, 391
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 311, 456
TspMI CCCGGG 1 cut(s) 383
TspRI CASTG 1 cut(s) 31
Van91I CCANNNNNTGG 2 cut(s) 103, 162
VpaK11BI GGWCC 3 cut(s) 149, 287, 379
XapI RAATTY 1 cut(s) 170
XmaI CCCGGG 1 cut(s) 383
XspI CTAG 1 cut(s) 513
ZrmI AGTACT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.