RLG00000013725

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005690
Physical Location & Seq
Forward (+)
36816792 .. 36818791
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013725

Sequence Viewer

Length: 339 bp
ATGGGAGTAGAGAAGGAAGTTCTGAGCGCTGGAACTGGAGCCATACCGGTGCCAGGTCAAAAGGTCACCGTTCACTGCACTGGTTATGGAAAAAATGGTGATCTCAATCTGAAGTTTTGGAGCACCAAGGACCCTGGGCAGCAGCCTTTCAGCTTCAAAATTGGCCAAGGCTCTGTTATAAAAGGGTGGGATGAAGGCGTCCTTGGAATGCAAGTTGGAGAAGTTGCTCGTCTGAGGTGCTCTCCAGACTATGCTTATGGATCTGGTGGATTTCCTGCATGGGGGATACAACCTAATTCAGTTTTGGTTTTTGAGATTGAAGTCCTAAGCTTGGAGTGA

Protein Analysis

113

Amino Acids

11.92

Weight (kDa)

5.34

Isoelectric Point (pI)

23.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 16 - 109 2.7e-25 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 49
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 198
AfeI AGCGCT 1 cut(s) 28
AfiI CCNNNNNNNGG 3 cut(s) 53, 281, 331
AgeI ACCGGT 1 cut(s) 46
AgsI TTSAA 2 cut(s) 157, 320
AjnI CCWGG 2 cut(s) 52, 133
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 2 cut(s) 153, 330
AluI AGCT 2 cut(s) 153, 330
Alw21I GWGCWC 2 cut(s) 125, 242
AlwI GGATC 1 cut(s) 268
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 139, 142
AsiGI ACCGGT 1 cut(s) 46
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 58, 110
AvaII GGWCC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 1 cut(s) 49
Bbv12I GWGCWC 2 cut(s) 125, 242
BbvI GCAGC 2 cut(s) 151, 154
BciT130I CCWGG 2 cut(s) 54, 135
BciVI GTATCC 1 cut(s) 279
BfoI RGCGCY 1 cut(s) 30
BfuI GTATCC 1 cut(s) 279
BisI GCNGC 2 cut(s) 140, 143
BlsI GCNGC 2 cut(s) 141, 144
Bme1390I CCNGG 2 cut(s) 54, 135
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 3 cut(s) 40, 51, 132
BmrFI CCNGG 2 cut(s) 54, 135
BplI GAGNNNNNCTC 2 cut(s) 226, 258
BpmI CTGGAG 2 cut(s) 57, 228
Bpu10I CCTNAGC 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 5 cut(s) 126, 133, 134, 166, 202
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 281, 331
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 40, 85
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 2 cut(s) 54, 135
BseDI CCNNGG 5 cut(s) 126, 133, 134, 166, 202
BseGI GGATG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 3 cut(s) 53, 281, 331
BseMII CTCAG 2 cut(s) 14, 224
BseNI ACTGG 2 cut(s) 40, 85
BseXI GCAGC 2 cut(s) 151, 154
BsgI GTGCAG 1 cut(s) 61
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 49
BshTI ACCGGT 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 125, 242
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 53, 281, 331
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 125, 242
Bsp143I GATC 2 cut(s) 100, 260
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 15, 225
BspLI GGNNCC 3 cut(s) 40, 51, 132
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 2 cut(s) 40, 85
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 5 cut(s) 126, 133, 134, 166, 202
BssMI GATC 2 cut(s) 100, 260
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 3 cut(s) 126, 166, 202
Bst2UI CCWGG 2 cut(s) 54, 135
Bst4CI ACNGT 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 198
BstDEI CTNAG 3 cut(s) 23, 233, 326
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 103, 263
BstMBI GATC 2 cut(s) 100, 260
BstNI CCWGG 2 cut(s) 54, 135
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 52, 133
BstV1I GCAGC 2 cut(s) 151, 154
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuI GTATCC 1 cut(s) 279
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 73, 78
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 1 cut(s) 187
CspAI ACCGGT 1 cut(s) 46
CviAII CATG 1 cut(s) 279
CviJI RGCY 6 cut(s) 41, 145, 153, 165, 171, 330
CviKI_1 RGCY 6 cut(s) 41, 145, 153, 165, 171, 330
DdeI CTNAG 3 cut(s) 23, 233, 326
DpnI GATC 2 cut(s) 102, 262
DpnII GATC 2 cut(s) 100, 260
EaeI YGGCCR 1 cut(s) 163
Eco130I CCWWGG 3 cut(s) 126, 166, 202
Eco47I GGWCC 1 cut(s) 130
Eco47III AGCGCT 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 130
EcoO65I GGTNACC 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 52, 133
EcoT14I CCWWGG 3 cut(s) 126, 166, 202
ErhI CCWWGG 3 cut(s) 126, 166, 202
FaeI CATG 1 cut(s) 282
FaiI YATR 6 cut(s) 44, 87, 179, 252, 258, 280
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 140, 143
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 140, 143
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 140, 143
GsuI CTGGAG 2 cut(s) 57, 228
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 1 cut(s) 282
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 328
HpaII CCGG 1 cut(s) 47
HphI GGTGA 2 cut(s) 58, 110
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 24, 111, 234
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 7, 188
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 3 cut(s) 78, 211, 278
HpyF3I CTNAG 3 cut(s) 23, 233, 326
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 282
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 100, 260
LmnI GCTCC 2 cut(s) 38, 120
Lsp1109I GCAGC 2 cut(s) 151, 154
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 102, 262
MboI GATC 2 cut(s) 100, 260
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 125, 242
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 2 cut(s) 159, 295
MluNI TGGCCA 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 1 cut(s) 228
Mox20I TGGCCA 1 cut(s) 165
MscI TGGCCA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 165
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 54, 135
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 2 cut(s) 54, 135
NdeII GATC 2 cut(s) 100, 260
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 3 cut(s) 40, 51, 132
NmuCI GTSAC 1 cut(s) 64
PasI CCCWGGG 1 cut(s) 134
PctI GAATGC 1 cut(s) 213
PinAI ACCGGT 1 cut(s) 46
PkrI GCNGC 2 cut(s) 141, 144
PpuMI RGGWCCY 1 cut(s) 130
PsiI TTATAA 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 52, 133
PspEI GGTNACC 1 cut(s) 64
PspGI CCWGG 2 cut(s) 52, 133
PspN4I GGNNCC 3 cut(s) 40, 51, 132
PspPI GGNCC 1 cut(s) 130
PspPPI RGGWCCY 1 cut(s) 130
PsuI RGATCY 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 2 cut(s) 140, 143
Sau3AI GATC 2 cut(s) 100, 260
Sau96I GGNCC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 54, 135
SduI GDGCHC 2 cut(s) 125, 242
SetI ASST 6 cut(s) 58, 66, 155, 239, 295, 332
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 2 cut(s) 159, 295
StyD4I CCNGG 2 cut(s) 52, 133
StyI CCWWGG 3 cut(s) 126, 166, 202
TaaI ACNGT 1 cut(s) 70
TasI AATT 2 cut(s) 159, 295
TscAI CASTG 2 cut(s) 80, 85
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 139, 142
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 2 cut(s) 80, 85
VpaK11BI GGWCC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.