Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Forward (+)

7974097 .. 7974687

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0059300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCCGGAGATCTCGAAAGCGGGTCAGGTTGTATGCTTGGTGCCTTGGCGGGGGATCCGATACAAGATGGCAATGCTTTTACAGATTATGGTGTGAAATCCCCAAAAGCAAGCAAGGGCATTACCCTAGAACCAGGAGAGTTACTACCCAATTCTCTTTTTGAAAGGGCAACTGCCTCTCTTGTTGCAACGATGGCAAATGTGGGTTGTATTCCAAACCACTCCTCCCTGGTTCCTGTTGCTGCCTCTCAGCAAAATCCTGTCCCATCTTGTTCATTTGGGCTCGATAGGATTCTCCCCTACGCTAATTTCATAACTGGCAATGGGGGCAACATGTATCAATATTCACAACAGTATGCTGGTCACTATCCTATTCTGGCTGGACCTGGCAATATGTATCAAAATACTCATGCTATGGTTGGACATATGCAAAGCCGGGTACCAAACCTTCTTCAGGCGGGAGTACTGGGCTATGAATATCCAGATTCTCAAGTTATGGCTGGACACAAAGAAAGCAGGGTACCAAAACTTCTTCAAGCTGGAATGGGATATGTTTATCCAAATTATCAAGCTGAGGGTACTTCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

196

Amino Acids

20.74

Weight (kDa)

5.63

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	439, 520
AccB1I	GGYRCC	3 cut(s)	41, 439, 520
AciI	CCGC	3 cut(s)	21, 50, 458
AclWI	GGATC	2 cut(s)	50, 63
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	4 cut(s)	441, 465, 522, 580
AfiI	CCNNNNNNNGG	2 cut(s)	51, 454
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	164, 536
AjnI	CCWGG	3 cut(s)	133, 228, 385
AluBI	AGCT	2 cut(s)	539, 572
AluI	AGCT	2 cut(s)	539, 572
AlwI	GGATC	2 cut(s)	50, 63
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	242
Asp718I	GGTACC	2 cut(s)	439, 520
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	55
BanI	GGYRCC	3 cut(s)	41, 439, 520
BanII	GRGCYC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	4 cut(s)	432, 464, 513, 545
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	3 cut(s)	62, 187, 274
BciT130I	CCWGG	3 cut(s)	135, 230, 387
BcnI	CCSGG	1 cut(s)	437
BfaI	CTAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	4 cut(s)	135, 230, 387, 437
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	5 cut(s)	43, 57, 234, 441, 522
BmrFI	CCNGG	4 cut(s)	135, 230, 387, 437
BmrI	ACTGGG	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	45, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 454
Bse1I	ACTGG	2 cut(s)	322, 471
Bse3DI	GCAATG	2 cut(s)	79, 328
BseBI	CCWGG	3 cut(s)	135, 230, 387
BseDI	CCNNGG	2 cut(s)	45, 228
BseLI	CCNNNNNNNGG	2 cut(s)	51, 454
BseMI	GCAATG	2 cut(s)	79, 328
BseMII	CTCAG	2 cut(s)	263, 564
BseNI	ACTGG	2 cut(s)	322, 471
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	3 cut(s)	41, 439, 520
BsiSI	CCGG	2 cut(s)	6, 436
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	51, 454
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	10, 55
BspACI	CCGC	3 cut(s)	21, 50, 458
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	262, 565
BspLI	GGNNCC	5 cut(s)	43, 57, 234, 441, 522
BspPI	GGATC	2 cut(s)	50, 63
BspT107I	GGYRCC	3 cut(s)	41, 439, 520
BsrDI	GCAATG	2 cut(s)	79, 328
BsrI	ACTGG	2 cut(s)	322, 471
BssECI	CCNNGG	2 cut(s)	45, 228
BssMI	GATC	2 cut(s)	10, 55
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	135, 230, 387
Bst4CI	ACNGT	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	249, 573
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstKTI	GATC	2 cut(s)	13, 58
BstMBI	GATC	2 cut(s)	10, 55
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 327
BstNI	CCWGG	3 cut(s)	135, 230, 387
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	4 cut(s)	133, 228, 385, 435
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	10, 55
BstYI	RGATCY	2 cut(s)	10, 55
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	4 cut(s)	440, 464, 521, 579
CviAII	CATG	2 cut(s)	334, 410
CviJI	RGCY	8 cut(s)	5, 283, 380, 435, 471, 500, 539, 572
CviKI_1	RGCY	8 cut(s)	5, 283, 380, 435, 471, 500, 539, 572
CviQI	GTAC	4 cut(s)	440, 464, 521, 579
DdeI	CTNAG	2 cut(s)	249, 573
DpnI	GATC	2 cut(s)	12, 57
DpnII	GATC	2 cut(s)	10, 55
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	437
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	3 cut(s)	133, 228, 385
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	337, 413
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	333, 409
FauI	CCCGC	3 cut(s)	14, 43, 451
FauNDI	CATATG	1 cut(s)	426
Fnu4HI	GCNGC	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	6, 436
Hin1II	CATG	2 cut(s)	337, 413
HinfI	GANTC	2 cut(s)	292, 485
HpaII	CCGG	2 cut(s)	6, 436
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	2 cut(s)	14, 482
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	188, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 327
HpyF3I	CTNAG	2 cut(s)	249, 573
Hsp92II	CATG	2 cut(s)	337, 413
KpnI	GGTACC	2 cut(s)	443, 524
Kzo9I	GATC	2 cut(s)	10, 55
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	141, 362
MalI	GATC	2 cut(s)	12, 57
MboI	GATC	2 cut(s)	10, 55
MboII	GAAGA	2 cut(s)	443, 524
MflI	RGATCY	2 cut(s)	10, 55
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	151, 307, 562
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	4 cut(s)	187, 235, 256, 568
MspI	CCGG	2 cut(s)	6, 436
MspR9I	CCNGG	4 cut(s)	135, 230, 387, 437
MvaI	CCWGG	3 cut(s)	135, 230, 387
MwoI	GCNNNNNNNGC	2 cut(s)	194, 327
NciI	CCSGG	1 cut(s)	437
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	2 cut(s)	10, 55
NlaIII	CATG	2 cut(s)	337, 413
NlaIV	GGNNCC	5 cut(s)	43, 57, 234, 441, 522
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	337
PciI	ACATGT	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	292, 485
PkrI	GCNGC	1 cut(s)	244
PscI	ACATGT	1 cut(s)	333
Psp6I	CCWGG	3 cut(s)	133, 228, 385
PspGI	CCWGG	3 cut(s)	133, 228, 385
PspN4I	GGNNCC	5 cut(s)	43, 57, 234, 441, 522
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	10, 55
RsaI	GTAC	4 cut(s)	441, 465, 522, 580
RsaNI	GTAC	4 cut(s)	440, 464, 521, 579
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	10, 55
Sau96I	GGNCC	1 cut(s)	383
ScaI	AGTACT	1 cut(s)	465
ScrFI	CCNGG	4 cut(s)	135, 230, 387, 437
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	5 cut(s)	31, 388, 450, 541, 574
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
Sse9I	AATT	3 cut(s)	151, 307, 562
SsiI	CCGC	3 cut(s)	21, 50, 458
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	4 cut(s)	133, 228, 385, 435
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	15, 285
TasI	AATT	3 cut(s)	151, 307, 562
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	2 cut(s)	292, 485
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	264, 301, 489
VpaK11BI	GGWCC	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	452
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.