Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006936.1

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Forward (+)

49001 .. 50885

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006936.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgggagtggagaaggaagttctgagcgctggaactggtcccaaaccggtgcgaggtcaaaaggtcaccgttcactgcactggttatggaaaaaatggtgatctcaatctcaagttttggagcaccaaggatcctgggcagcagcctttcagcttcaaaattggccaaggctctgttataaaagggtgggacgaaggcgtccttggaatgcaagttggagaagttgctcgtctgaggtgctctccagactatgcttatggatctggtggatttcctgcatgggggatacaacctaattcagtgttggtttttgagattgaagtcctaggcttggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

112

Amino Acids

11.99

Weight (kDa)

6.57

Isoelectric Point (pI)

21.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AasI	GACNNNNNNGTC	1 cut(s)	197
AclWI	GGATC	3 cut(s)	125, 138, 268
AcoI	YGGCCR	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	198
AfeI	AGCGCT	1 cut(s)	28
AfiI	CCNNNNNNNGG	3 cut(s)	53, 281, 331
AgeI	ACCGGT	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	157, 320
AjnI	CCWGG	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw21I	GWGCWC	2 cut(s)	125, 242
AlwI	GGATC	3 cut(s)	125, 138, 268
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	139, 142
AsiGI	ACCGGT	1 cut(s)	46
AspA2I	CCTAGG	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	58, 110
AvaII	GGWCC	1 cut(s)	38
AvrII	CCTAGG	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	125, 242
BbvI	GCAGC	2 cut(s)	151, 154
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	140, 143
BlnI	CCTAGG	1 cut(s)	325
BlsI	GCNGC	2 cut(s)	141, 144
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	40, 132
BmrFI	CCNGG	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	5 cut(s)	126, 134, 166, 202, 325
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 281, 331
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	40, 85
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	5 cut(s)	126, 134, 166, 202, 325
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	53, 281, 331
BseMII	CTCAG	2 cut(s)	14, 224
BseNI	ACTGG	2 cut(s)	40, 85
BseXI	GCAGC	2 cut(s)	151, 154
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	165
BshTI	ACCGGT	1 cut(s)	46
BsiHKAI	GWGCWC	2 cut(s)	125, 242
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	24, 203
BslI	CCNNNNNNNGG	3 cut(s)	53, 281, 331
BsmFI	GGGAC	2 cut(s)	24, 203
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	125, 242
Bsp143I	GATC	3 cut(s)	100, 130, 260
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	15, 225
BspLI	GGNNCC	2 cut(s)	40, 132
BspPI	GGATC	3 cut(s)	125, 138, 268
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	40, 85
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	5 cut(s)	126, 134, 166, 202, 325
BssMI	GATC	3 cut(s)	100, 130, 260
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	4 cut(s)	126, 166, 202, 325
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	198
BstDEI	CTNAG	2 cut(s)	23, 233
BstEII	GGTNACC	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	3 cut(s)	103, 133, 263
BstMBI	GATC	3 cut(s)	100, 130, 260
BstNI	CCWGG	1 cut(s)	135
BstPI	GGTNACC	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	151, 154
BstX2I	RGATCY	2 cut(s)	130, 260
BstYI	RGATCY	2 cut(s)	130, 260
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	3 cut(s)	73, 78, 306
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	46
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	5 cut(s)	145, 153, 165, 171, 330
CviKI_1	RGCY	5 cut(s)	145, 153, 165, 171, 330
DdeI	CTNAG	2 cut(s)	23, 233
DpnI	GATC	3 cut(s)	102, 132, 262
DpnII	GATC	3 cut(s)	100, 130, 260
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	163
Eco130I	CCWWGG	4 cut(s)	126, 166, 202, 325
Eco47I	GGWCC	1 cut(s)	38
Eco47III	AGCGCT	1 cut(s)	28
Eco91I	GGTNACC	1 cut(s)	64
EcoO65I	GGTNACC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	4 cut(s)	126, 166, 202, 325
ErhI	CCWWGG	4 cut(s)	126, 166, 202, 325
FaeI	CATG	1 cut(s)	282
FaiI	YATR	5 cut(s)	87, 179, 252, 258, 280
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	2 cut(s)	24, 203
FatI	CATG	1 cut(s)	278
Fnu4HI	GCNGC	2 cut(s)	140, 143
Fsp4HI	GCNGC	2 cut(s)	140, 143
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	140, 143
GsuI	CTGGAG	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	58, 110
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	24, 234
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	7, 188
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	78, 211, 278
HpyF3I	CTNAG	2 cut(s)	23, 233
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	100, 130, 260
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	9 cut(s)	15, 21, 60, 66, 120, 147, 249, 258, 288
Lsp1109I	GCAGC	2 cut(s)	151, 154
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	3 cut(s)	102, 132, 262
MboI	GATC	3 cut(s)	100, 130, 260
MflI	RGATCY	2 cut(s)	130, 260
MhlI	GDGCHC	2 cut(s)	125, 242
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	2 cut(s)	159, 295
MluNI	TGGCCA	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	2 cut(s)	47, 228
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	165
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	100, 130, 260
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	2 cut(s)	40, 132
NmuCI	GTSAC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	213
PinAI	ACCGGT	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	141, 144
PsiI	TTATAA	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	40, 132
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	130, 260
SatI	GCNGC	2 cut(s)	140, 143
Sau3AI	GATC	3 cut(s)	100, 130, 260
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	125, 242
SetI	ASST	5 cut(s)	58, 66, 155, 239, 295
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	159, 295
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	4 cut(s)	126, 166, 202, 325
TaaI	ACNGT	1 cut(s)	70
TasI	AATT	2 cut(s)	159, 295
TscAI	CASTG	3 cut(s)	80, 85, 306
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	139, 142
Tsp45I	GTSAC	1 cut(s)	64
TspRI	CASTG	3 cut(s)	80, 85, 306
VpaK11BI	GGWCC	1 cut(s)	38
XmaJI	CCTAGG	1 cut(s)	325
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.