Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Forward (+)

8000792 .. 8002086

Gene Structure 1295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0059400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAGAGACGTCTGAATCAGCCTCTGAGATCAAAGAGGAAAATACATGACTCGGCCGACGAAGATGAACCTTTGATATTCAAGAGAAAGGATGGAGAACATCGACAAAGTGACAAGCAAGAAGAGGAAGGAGAAGAAGATCCGGAAAGTGAAGAACTAGAAGAAGACCAACAAAATGAAGAGCAAGAAGAGGACGGAGAAGAAGATCAGGAAAGTGAAGAACTAGAAGAAGACCAACAAAATGAAGAGCAAGAAGAGGACGGAGAAGAAGATCAGGAAAGTGAAGAACAAGAAGAAGACCAACAAAATGAAGAGCAAGAAGAGGACGGAGAAGAAAATCAGGAAAGTGATGAAGAACTAGATGAACCAGAAAATGAAGGAGAAGATGGATACGAAGGACCGTATAACGAACCAACCAATGCTGCTGACCGAGAGGGTCATGGTTCAAATATTGCGGTAATCTTAACTGAGCCAGCTCTGCTCGATTGCCCTATATGCTTTGAGCCCTTGACCATCCCTGTCTTCCAGTGTGATCTAAATGGTCACATTTCTTGCTCCACCTGCTGCACCAAAATTAACAACAAGTGCCCCTCTTGTTCCTGCCCTATTGGATCCAATCGTTGCCGGGCCGTCGAGAAAATTGTGGAATCAATTGCAACTCCATGCCAAAACATCAAGTACGGCTGCAACACTCGTGTGATTTACAATAAGAAAATTGAACATGAAAAGACATGTCTCTATTTGCCTTGTTCATGCCCCTATTTTGGCTGCACGTTTGTCTCATCGGCTAAAGAGTTATACAAACATTACAGCAATAATCATGTGTATTTTGCAACGGAGTTCGTGTGCGACGACGATTTTCGCAGTTTCTCTATTACATTAACCAAGATGGACAGATTTATTGTTCTTCGAGAAAAGAATGATGGGAGGTTATTTGTCCTCTACAACGATCCTGTCGTTCTGGGGAATTTGGTGACTCTTAGCTGTATTCAGCCCAGCTTCATGGAGGGTTTCAACTACTATCTTGTAGTTAAACACGAGGAGACTACTCTGAAATTAAGGTCTGTAACGAAAAGCACACAAGGGCAGAAAAATTATAGCCCTCCTAATTCATCCAGTTCGCTTTTAATCCCGCATGACTTTTTCGATTCTTGGGATGACCAGCTCGAGATGGAAATCTGTATATGGCGTAAGAAAGATTCCTCACATGACAGAAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

407

Amino Acids

47.07

Weight (kDa)

4.34

Isoelectric Point (pI)

74.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	163 - 199	1.3e-08	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	213 - 274	2e-12	Sina, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	569
AatII	GACGTC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	569
AccIII	TCCGGA	1 cut(s)	142
AciI	CCGC	2 cut(s)	455, 1133
AclWI	GGATC	4 cut(s)	134, 606, 619, 944
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	967
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	1 cut(s)	764
AflIII	ACRYGT	1 cut(s)	731
AgsI	TTSAA	4 cut(s)	82, 447, 719, 1015
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	4 cut(s)	476, 984, 999, 1165
AluI	AGCT	4 cut(s)	476, 984, 999, 1165
Alw26I	GTCTC	3 cut(s)	740, 784, 1037
AlwI	GGATC	4 cut(s)	134, 606, 619, 944
AlwNI	CAGNNNCTG	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	1166
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	2 cut(s)	54, 627
ApeKI	GCWGC	4 cut(s)	422, 564, 684, 768
ApoI	RAATTY	1 cut(s)	967
AspS9I	GGNCC	2 cut(s)	398, 627
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	1 cut(s)	985
AvaI	CYCGRG	1 cut(s)	1166
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	590
BamHI	GGATCC	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	507
BauI	CACGAG	2 cut(s)	693, 1037
BbsI	GAAGAC	4 cut(s)	171, 237, 303, 514
BbvI	GCAGC	4 cut(s)	409, 551, 671, 755
BccI	CCATC	6 cut(s)	86, 380, 521, 883, 917, 1165
BceAI	ACGGC	2 cut(s)	614, 697
BciVI	GTATCC	1 cut(s)	383
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	3 cut(s)	740, 784, 1037
BfaI	CTAG	3 cut(s)	158, 224, 359
BfuAI	ACCTGC	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	4 cut(s)	423, 565, 685, 769
BlsI	GCNGC	4 cut(s)	424, 566, 686, 770
Bme1390I	CCNGG	1 cut(s)	626
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	1166
BmgT120I	GGNCC	2 cut(s)	398, 627
BmiI	GGNNCC	1 cut(s)	613
BmrFI	CCNGG	1 cut(s)	626
BpiI	GAAGAC	4 cut(s)	171, 237, 303, 514
BpuMI	CCSGG	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	1175
BsaHI	GRCGYC	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	764
Bse1I	ACTGG	2 cut(s)	526, 1116
Bse8I	GATNNNNATC	1 cut(s)	1175
BseAI	TCCGGA	1 cut(s)	142
BseGI	GGATG	4 cut(s)	97, 513, 1112, 1162
BseJI	GATNNNNATC	1 cut(s)	1175
BseLI	CCNNNNNNNGG	1 cut(s)	764
BseMII	CTCAG	2 cut(s)	17, 459
BseNI	ACTGG	2 cut(s)	526, 1116
BseRI	GAGGAG	1 cut(s)	1055
BseSI	GKGCMC	1 cut(s)	590
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	4 cut(s)	409, 551, 671, 755
BseYI	CCCAGC	1 cut(s)	995
BsgI	GTGCAG	2 cut(s)	550, 754
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	56, 629
BsiEI	CGRYCG	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	1166
BsiSI	CCGG	2 cut(s)	143, 625
BslI	CCNNNNNNNGG	1 cut(s)	764
BsmAI	GTCTC	3 cut(s)	740, 784, 1037
BsnI	GGCC	2 cut(s)	56, 629
BsoBI	CYCGRG	1 cut(s)	1166
Bsp1286I	GDGCHC	2 cut(s)	507, 590
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	7 cut(s)	29, 139, 205, 271, 532, 611, 949
BspACI	CCGC	2 cut(s)	455, 1133
BspANI	GGCC	2 cut(s)	56, 629
BspCNI	CTCAG	2 cut(s)	18, 460
BspEI	TCCGGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	613
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	4 cut(s)	134, 606, 619, 944
BspQI	GCTCTTC	3 cut(s)	174, 240, 306
BsrI	ACTGG	2 cut(s)	526, 1116
BssMI	GATC	7 cut(s)	29, 139, 205, 271, 532, 611, 949
BssNI	GRCGYC	1 cut(s)	10
BssSI	CACGAG	2 cut(s)	693, 1037
Bst2BI	CACGAG	2 cut(s)	693, 1037
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	7 cut(s)	117, 174, 183, 240, 249, 306, 315
BstACI	GRCGYC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	3 cut(s)	26, 468, 980
BstF5I	GGATG	4 cut(s)	97, 513, 1112, 1162
BstKTI	GATC	7 cut(s)	32, 142, 208, 274, 535, 614, 952
BstMAI	GTCTC	3 cut(s)	740, 784, 1037
BstMBI	GATC	7 cut(s)	29, 139, 205, 271, 532, 611, 949
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	3 cut(s)	478, 495, 561
BstNSI	RCATGY	1 cut(s)	735
BstSCI	CCNGG	1 cut(s)	624
BstSLI	GKGCMC	1 cut(s)	590
BstV1I	GCAGC	4 cut(s)	409, 551, 671, 755
BstV2I	GAAGAC	4 cut(s)	171, 237, 303, 514
BstX2I	RGATCY	2 cut(s)	139, 611
BstXI	CCANNNNNNTGG	1 cut(s)	1003
BstYI	RGATCY	2 cut(s)	139, 611
BstZI	CGGCCG	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	2 cut(s)	56, 629
BtsCI	GGATG	4 cut(s)	97, 513, 1112, 1162
BtsIMutI	CAGTG	1 cut(s)	533
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	1 cut(s)	474
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	398, 627
Csp6I	GTAC	1 cut(s)	679
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	3 cut(s)	26, 468, 980
DpnI	GATC	7 cut(s)	31, 141, 207, 273, 534, 613, 951
DpnII	GATC	7 cut(s)	29, 139, 205, 271, 532, 611, 949
EaeI	YGGCCR	1 cut(s)	54
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	7 cut(s)	117, 174, 183, 240, 249, 306, 315
EarI	CTCTTC	7 cut(s)	117, 174, 183, 240, 249, 306, 315
EclXI	CGGCCG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	398
Eco52I	CGGCCG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	1166
EcoT38I	GRGCYC	1 cut(s)	507
FauI	CCCGC	1 cut(s)	1140
Fnu4HI	GCNGC	4 cut(s)	423, 565, 685, 769
FokI	GGATG	4 cut(s)	104, 500, 1099, 1169
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	4 cut(s)	423, 565, 685, 769
FspBI	CTAG	3 cut(s)	158, 224, 359
GluI	GCNGC	4 cut(s)	423, 565, 685, 769
GsaI	CCCAGC	1 cut(s)	999
HaeIII	GGCC	2 cut(s)	56, 629
HapII	CCGG	2 cut(s)	143, 625
Hin1I	GRCGYC	1 cut(s)	10
HinfI	GANTC	6 cut(s)	16, 50, 647, 976, 1148, 1199
HpaII	CCGG	2 cut(s)	143, 625
HphI	GGTGA	1 cut(s)	985
Hpy188I	TCNGA	3 cut(s)	15, 27, 1053
Hpy188III	TCNNGA	8 cut(s)	82, 143, 209, 275, 341, 634, 911, 1168
Hpy99I	CGWCG	4 cut(s)	62, 635, 854, 857
HpyAV	CCTTC	3 cut(s)	122, 371, 389
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4IV	ACGT	2 cut(s)	10, 773
HpyCH4V	TGCA	5 cut(s)	567, 656, 687, 771, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	478, 495, 561
HpyF3I	CTNAG	3 cut(s)	26, 468, 980
HpySE526I	ACGT	2 cut(s)	10, 773
Hsp92I	GRCGYC	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	142
Kzo9I	GATC	7 cut(s)	29, 139, 205, 271, 532, 611, 949
LguI	GCTCTTC	3 cut(s)	174, 240, 306
LmnI	GCTCC	1 cut(s)	560
Lsp1109I	GCAGC	4 cut(s)	409, 551, 671, 755
MaeI	CTAG	3 cut(s)	158, 224, 359
MaeII	ACGT	2 cut(s)	10, 773
MaeIII	GTNAC	4 cut(s)	110, 542, 973, 1066
MalI	GATC	7 cut(s)	31, 141, 207, 273, 534, 613, 951
MboI	GATC	7 cut(s)	29, 139, 205, 271, 532, 611, 949
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	2 cut(s)	139, 611
MhlI	GDGCHC	2 cut(s)	507, 590
MluCI	AATT	8 cut(s)	573, 639, 651, 714, 967, 1055, 1093, 1108
MlyI	GAGTC	2 cut(s)	44, 970
MroI	TCCGGA	1 cut(s)	142
MseI	TTAA	6 cut(s)	464, 576, 881, 1032, 1058, 1127
MslI	CAYNNNNRTG	1 cut(s)	695
MspI	CCGG	2 cut(s)	143, 625
MspR9I	CCNGG	1 cut(s)	626
MunI	CAATTG	1 cut(s)	651
MwoI	GCNNNNNNNGC	3 cut(s)	478, 495, 561
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	7 cut(s)	29, 139, 205, 271, 532, 611, 949
NlaIV	GGNNCC	1 cut(s)	613
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	3 cut(s)	110, 542, 973
NspI	RCATGY	1 cut(s)	735
OliI	CACNNNNGTG	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	1166
PaqCI	CACCTGC	1 cut(s)	569
PciI	ACATGT	1 cut(s)	731
PciSI	GCTCTTC	3 cut(s)	174, 240, 306
PcsI	WCGNNNNNNNCGW	2 cut(s)	849, 954
PfeI	GAWTC	4 cut(s)	16, 647, 1148, 1199
PkrI	GCNGC	4 cut(s)	424, 566, 686, 770
PleI	GAGTC	2 cut(s)	44, 970
PpsI	GAGTC	2 cut(s)	44, 970
PscI	ACATGT	1 cut(s)	731
PspFI	CCCAGC	1 cut(s)	995
PspN4I	GGNNCC	1 cut(s)	613
PspPI	GGNCC	2 cut(s)	398, 627
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	139, 611
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
RseI	CAYNNNNRTG	1 cut(s)	695
SapI	GCTCTTC	3 cut(s)	174, 240, 306
SaqAI	TTAA	6 cut(s)	464, 576, 881, 1032, 1058, 1127
SatI	GCNGC	4 cut(s)	423, 565, 685, 769
Sau3AI	GATC	7 cut(s)	29, 139, 205, 271, 532, 611, 949
Sau96I	GGNCC	2 cut(s)	398, 627
SchI	GAGTC	2 cut(s)	44, 970
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	2 cut(s)	507, 590
Sfr274I	CTCGAG	1 cut(s)	1166
SinI	GGWCC	1 cut(s)	398
SlaI	CTCGAG	1 cut(s)	1166
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	1166
SmoI	CTYRAG	1 cut(s)	1166
Sse9I	AATT	8 cut(s)	573, 639, 651, 714, 967, 1055, 1093, 1108
SsiI	CCGC	2 cut(s)	455, 1133
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	3 cut(s)	158, 224, 359
StyD4I	CCNGG	1 cut(s)	624
TaaI	ACNGT	1 cut(s)	402
TaiI	ACGT	2 cut(s)	13, 776
TaqI	TCGA	6 cut(s)	103, 483, 633, 910, 1146, 1167
TaqII	GACCGA	1 cut(s)	444
TasI	AATT	8 cut(s)	573, 639, 651, 714, 967, 1055, 1093, 1108
TfiI	GAWTC	4 cut(s)	16, 647, 1148, 1199
Tru1I	TTAA	6 cut(s)	464, 576, 881, 1032, 1058, 1127
Tru9I	TTAA	6 cut(s)	464, 576, 881, 1032, 1058, 1127
TscAI	CASTG	1 cut(s)	533
TseFI	GTSAC	3 cut(s)	110, 542, 973
TseI	GCWGC	4 cut(s)	422, 564, 684, 768
Tsp45I	GTSAC	3 cut(s)	110, 542, 973
TspGWI	ACGGA	4 cut(s)	210, 276, 342, 851
TspRI	CASTG	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	967
XceI	RCATGY	1 cut(s)	735
XhoI	CTCGAG	1 cut(s)	1166
XspI	CTAG	3 cut(s)	158, 224, 359
ZraI	GACGTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.