Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Reverse (-)

15220146 .. 15222418

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22200.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTTCCATTCCATCATGTACCAGTGCTACTTCCAACTCATGCTTCACCTCCAACTCCTTCAGTTCTCCATCTTCTTCTCTCAAACTCATTGCCCAGTTTCTGGGTACCCGAAACAAGCTTGGTCAGGTCAGACCCTTCCGTCTTGGACCCTCCAAGTGCTGGTTCAAATTCAGTAAAAGCGGTATAGATGCTATGGCCAAGGTTGCTGGAATCTATGCAAGCCAATCCGGTGGCGAGTTTGGTCAAGATAATGTCGAGCAGATGGGAGTGGAGAAGCAAGTTCTGAAGGCTGGAACTGGTCCCAAACCGGTGGCAGGTCAGAATGTGACCGTTCATTGCACCGGTTATGGAAAAGATGGTGATTTGAATCTGAAGTTTTGGAGCACTGAGGACCCAGGGCAGCAGCCTTTCACCTTCAGAATTGGGCAAGGGTCTGTTATAAAAGGGTGGGATGAAGGAGTCCTTGGAATGCAAGTTGGAGAAGTTGCACGATTCCGGTGCTCTCCGGATTATGCTTATGGAGCTAGTGGATTTCCTGCTTGGGGGATACAACCCAATTCAATTTTGGATTTTGAGATTGAAGTACTGAAATTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

201

Amino Acids

21.42

Weight (kDa)

8.25

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	103 - 197	9.5e-24	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
AasI	GACNNNNNNGTC	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	107
AccB7I	CCANNNNNTGG	2 cut(s)	103, 162
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	4 cut(s)	46, 308, 395, 403
AfaI	GTAC	3 cut(s)	22, 109, 588
AfiI	CCNNNNNNNGG	4 cut(s)	103, 162, 317, 545
AgeI	ACCGGT	2 cut(s)	310, 344
AgsI	TTSAA	4 cut(s)	169, 370, 564, 584
AjnI	CCWGG	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	6 cut(s)	29, 61, 149, 181, 450, 482
AluBI	AGCT	2 cut(s)	121, 527
AluI	AGCT	2 cut(s)	121, 527
Alw21I	GWGCWC	2 cut(s)	389, 506
AlwNI	CAGNNNCTG	1 cut(s)	103
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	403, 406
ApoI	RAATTY	1 cut(s)	170
AsiGI	ACCGGT	2 cut(s)	310, 344
Asp718I	GGTACC	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	149, 302, 394
AsuHPI	GGTGA	3 cut(s)	40, 374, 406
AvaII	GGWCC	3 cut(s)	149, 302, 394
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	107
Bbv12I	GWGCWC	2 cut(s)	389, 506
BbvI	GCAGC	2 cut(s)	415, 418
BccI	CCATC	4 cut(s)	22, 79, 259, 353
BcgI	CGANNNNNNTGC	2 cut(s)	483, 517
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	1 cut(s)	543
BfaI	CTAG	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	543
BisI	GCNGC	2 cut(s)	404, 407
BlsI	GCNGC	2 cut(s)	405, 408
BmcAI	AGTACT	1 cut(s)	588
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	3 cut(s)	149, 302, 394
BmgT120I	GGNCC	3 cut(s)	149, 302, 394
BmiI	GGNNCC	4 cut(s)	109, 151, 304, 396
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	4 cut(s)	201, 397, 398, 466
BsaWI	WCCGGW	5 cut(s)	230, 310, 344, 498, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 162, 317, 545
Bse118I	RCCGGY	2 cut(s)	310, 344
Bse1I	ACTGG	3 cut(s)	24, 97, 304
Bse3DI	GCAATG	2 cut(s)	90, 337
Bse8I	GATNNNNATC	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	4 cut(s)	201, 397, 398, 466
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	103, 162, 317, 545
BseMI	GCAATG	2 cut(s)	90, 337
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	3 cut(s)	24, 97, 304
BseXI	GCAGC	2 cut(s)	415, 418
BshFI	GGCC	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	107
BshTI	ACCGGT	2 cut(s)	310, 344
BsiHKAI	GWGCWC	2 cut(s)	389, 506
BsiSI	CCGG	5 cut(s)	231, 311, 345, 499, 509
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	4 cut(s)	103, 162, 317, 545
BsmFI	GGGAC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	389, 506
Bsp13I	TCCGGA	1 cut(s)	508
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	382
BspEI	TCCGGA	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	109, 151, 304, 396
BspMI	ACCTGC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	90, 337
BsrFI	RCCGGY	2 cut(s)	310, 344
BsrI	ACTGG	3 cut(s)	24, 97, 304
BssAI	RCCGGY	2 cut(s)	310, 344
BssECI	CCNNGG	4 cut(s)	201, 397, 398, 466
BssT1I	CCWWGG	2 cut(s)	201, 466
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 524
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstV1I	GCAGC	2 cut(s)	415, 418
BstXI	CCANNNNNNTGG	2 cut(s)	233, 313
BsuI	GTATCC	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	31, 387
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	310, 344
Cfr13I	GGNCC	3 cut(s)	149, 302, 394
Csp6I	GTAC	3 cut(s)	21, 108, 587
CspAI	ACCGGT	2 cut(s)	310, 344
CviAII	CATG	2 cut(s)	18, 42
CviJI	RGCY	7 cut(s)	5, 121, 200, 225, 293, 409, 527
CviKI_1	RGCY	7 cut(s)	5, 121, 200, 225, 293, 409, 527
CviQI	GTAC	3 cut(s)	21, 108, 587
DdeI	CTNAG	1 cut(s)	390
DrdI	GACNNNNNNGTC	1 cut(s)	141
DseDI	GACNNNNNNGTC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	198
Eco130I	CCWWGG	2 cut(s)	201, 466
Eco47I	GGWCC	3 cut(s)	149, 302, 394
Eco57I	CTGAAG	4 cut(s)	46, 308, 395, 403
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	201, 466
ErhI	CCWWGG	2 cut(s)	201, 466
FaeI	CATG	2 cut(s)	21, 45
FaiI	YATR	9 cut(s)	19, 43, 188, 197, 219, 351, 443, 516, 522
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	2 cut(s)	17, 41
Fnu4HI	GCNGC	2 cut(s)	404, 407
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	2 cut(s)	404, 407
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	2 cut(s)	404, 407
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	5 cut(s)	231, 311, 345, 499, 509
Hin1II	CATG	2 cut(s)	21, 45
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	4 cut(s)	213, 370, 462, 495
HpaII	CCGG	5 cut(s)	231, 311, 345, 499, 509
HphI	GGTGA	3 cut(s)	40, 374, 406
Hpy188I	TCNGA	5 cut(s)	134, 288, 324, 375, 422
Hpy188III	TCNNGA	2 cut(s)	248, 509
HpyAV	CCTTC	5 cut(s)	70, 148, 283, 427, 452
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	4 cut(s)	221, 342, 475, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 524
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	21, 45
Kpn2I	TCCGGA	1 cut(s)	508
KpnI	GGTACC	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	384, 524
Lsp1109I	GCAGC	2 cut(s)	415, 418
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	528
MaeIII	GTNAC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	66, 69
MhlI	GDGCHC	2 cut(s)	389, 506
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	5 cut(s)	170, 423, 559, 564, 593
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	3 cut(s)	60, 78, 460
MnlI	CCTC	3 cut(s)	61, 163, 385
Mox20I	TGGCCA	1 cut(s)	200
MroI	TCCGGA	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	5 cut(s)	231, 311, 345, 499, 509
MspR9I	CCNGG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	206, 524
NlaIII	CATG	2 cut(s)	21, 45
NlaIV	GGNNCC	4 cut(s)	109, 151, 304, 396
NmuCI	GTSAC	1 cut(s)	328
PasI	CCCWGGG	1 cut(s)	398
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	213, 370, 495
PflMI	CCANNNNNTGG	2 cut(s)	103, 162
PinAI	ACCGGT	2 cut(s)	310, 344
PkrI	GCNGC	2 cut(s)	405, 408
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PpuMI	RGGWCCY	1 cut(s)	394
PsiI	TTATAA	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	4 cut(s)	109, 151, 304, 396
PspPI	GGNCC	3 cut(s)	149, 302, 394
PspPPI	RGGWCCY	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	103
RsaI	GTAC	3 cut(s)	22, 109, 588
RsaNI	GTAC	3 cut(s)	21, 108, 587
SatI	GCNGC	2 cut(s)	404, 407
Sau96I	GGNCC	3 cut(s)	149, 302, 394
ScaI	AGTACT	1 cut(s)	588
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	2 cut(s)	389, 506
SetI	ASST	7 cut(s)	53, 123, 132, 207, 322, 419, 529
SfaNI	GCATC	1 cut(s)	181
SinI	GGWCC	3 cut(s)	149, 302, 394
Sse9I	AATT	5 cut(s)	170, 423, 559, 564, 593
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	2 cut(s)	201, 466
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	258
TasI	AATT	5 cut(s)	170, 423, 559, 564, 593
TatI	WGTACW	1 cut(s)	586
TfiI	GAWTC	3 cut(s)	213, 370, 495
TscAI	CASTG	2 cut(s)	31, 394
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	403, 406
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	326, 471
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	31, 394
Van91I	CCANNNNNTGG	2 cut(s)	103, 162
VpaK11BI	GGWCC	3 cut(s)	149, 302, 394
XapI	RAATTY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.