Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003637

Physical Location & Seq

Genomic Coordinates Forward (+)

25794957 .. 25797031

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAATCTACCACCGGGATTTAGGTTTTTTCCGACCGATGAAGAGCTCGTCGTTCACTTCCTCCACCGGAAAGCTTCCCTCTTGCCTTGTCACCCTGATGTCATCCCCGACCTTGATCTTTACCATTACGATCCTTGGGACCTTCCCGGGAAAGCTTTGGGAGAAGGGAGGCAATGGTACTTCTATAGTAGAAAGACACAAGAGAGAGTGACAAGCAATGGGTATTGGGGATCAATGGGAATGGACGAGCCAATCTACACAAGCTCCACACACAAGAAAGTGGGAATCAAAAAGTATCTAACTTTCTATCTCGGAGATTCTCAGACTAATTGGATCATGCAAGAATATTCCCTCCCGGATTCCTCTTCTTCATCTAGTCGATCTTCTAAGAGATCAAGCCGTGCTTCTAGTTCTAGTCACAAACCCGATTATAGCAAGTGGGTGATATGCAGAGTGTATGAGCAAAATTGCAGTGAGGAGGAAGACGATGATGGGACAGAACTCTCATGTTTGGATGAAGTGTTTTTGTCTTTAGATGATCTTGACGAAGTAAGCTTACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

187

Amino Acids

21.56

Weight (kDa)

4.91

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	4 - 118	2.6e-35	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64530 AT5G64530
fragaria_vesca	FvH4_5g30580 FvH4_5g30580 FvH4_5g30580 FvH4_5g30600 FvH4_5g30600 FvH4_5g30600
malus_domestica	MD08G1222300.v1.1 MD15G1415700.v1.1
prunus_persica	Prupe.1G560100_v2.0.a1 Prupe.1G560100_v2.0.a1
pyrus_communis	pycom08g19310 pycom15g36890
rosa_chinensis	RchiOBHm_Chr7g0205441 RchiOBHm_Chr7g0225481
rosa_laevigata	RLG00000001813 RLG00000003381
rosa_multiflora	Rmu_sc0000259.1_g000004 Rmu_sc0006733.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233780 Rroxscaffold_3G00252230
rosa_rugosa	Rorug07G0091500 Rorug07G0091500 Rorug07G0229700.1 Rorug07G0229800.1
rosa_samantha	Rh7AG221700 Rh7AG373500 Rh7BG217500 Rh7BG364600 Rh7CG234400 Rh7CG391600 Rh7DG228500
rosa_wichuraiana	Rw7G019150 Rw7G031690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	125, 238, 341
AfaI	GTAC	1 cut(s)	179
AluBI	AGCT	5 cut(s)	46, 74, 155, 264, 555
AluI	AGCT	5 cut(s)	46, 74, 155, 264, 555
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	3 cut(s)	125, 238, 341
Ama87I	CYCGRG	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	4 cut(s)	15, 147, 148, 356
AsuHPI	GGTGA	2 cut(s)	83, 454
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	48
BarI	GAAGNNNNNNTAC	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	48
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	384
BcnI	CCSGG	4 cut(s)	15, 147, 148, 356
BfaI	CTAG	3 cut(s)	375, 408, 414
BfmI	CTRYAG	1 cut(s)	184
Bme1390I	CCNGG	4 cut(s)	15, 147, 148, 356
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	4 cut(s)	15, 147, 148, 356
BpiI	GAAGAC	1 cut(s)	489
BpuMI	CCSGG	4 cut(s)	15, 147, 148, 356
BsaJI	CCNNGG	2 cut(s)	134, 146
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bse3DI	GCAATG	2 cut(s)	179, 223
BseDI	CCNNGG	2 cut(s)	134, 146
BseGI	GGATG	2 cut(s)	102, 520
BseMI	GCAATG	2 cut(s)	179, 223
BseMII	CTCAG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	4 cut(s)	14, 67, 147, 356
BslFI	GGGAC	2 cut(s)	152, 508
BsmFI	GGGAC	2 cut(s)	152, 508
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	7 cut(s)	115, 130, 230, 333, 380, 392, 538
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	3 cut(s)	125, 238, 341
BspQI	GCTCTTC	1 cut(s)	36
BsrDI	GCAATG	2 cut(s)	179, 223
BssECI	CCNNGG	2 cut(s)	134, 146
BssMI	GATC	7 cut(s)	115, 130, 230, 333, 380, 392, 538
BssT1I	CCWWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	2 cut(s)	36, 370
BstDEI	CTNAG	2 cut(s)	321, 387
BstF5I	GGATG	2 cut(s)	102, 520
BstKTI	GATC	7 cut(s)	118, 133, 233, 336, 383, 395, 541
BstMBI	GATC	7 cut(s)	115, 130, 230, 333, 380, 392, 538
BstMCI	CGRYCG	1 cut(s)	36
BstSCI	CCNGG	4 cut(s)	13, 145, 146, 354
BstSFI	CTRYAG	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	102, 520
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	139
Cfr9I	CCCGGG	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	337, 507
CviJI	RGCY	7 cut(s)	46, 74, 155, 250, 264, 399, 555
CviKI_1	RGCY	7 cut(s)	46, 74, 155, 250, 264, 399, 555
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	321, 387
DpnI	GATC	7 cut(s)	117, 132, 232, 335, 382, 394, 540
DpnII	GATC	7 cut(s)	115, 130, 230, 333, 380, 392, 538
Eam1104I	CTCTTC	2 cut(s)	36, 370
EarI	CTCTTC	2 cut(s)	36, 370
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	2 cut(s)	340, 510
FaiI	YATR	6 cut(s)	186, 338, 432, 448, 459, 508
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FaqI	GGGAC	2 cut(s)	152, 508
FatI	CATG	2 cut(s)	336, 506
FokI	GGATG	2 cut(s)	89, 527
FriOI	GRGCYC	1 cut(s)	48
FspBI	CTAG	3 cut(s)	375, 408, 414
HapII	CCGG	4 cut(s)	14, 67, 147, 356
Hin1II	CATG	2 cut(s)	340, 510
HindIII	AAGCTT	3 cut(s)	72, 153, 553
HinfI	GANTC	4 cut(s)	4, 285, 317, 359
HpaII	CCGG	4 cut(s)	14, 67, 147, 356
HphI	GGTGA	2 cut(s)	83, 454
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	33, 314, 324
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	152, 158
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	340, 450, 471
HpyF3I	CTNAG	2 cut(s)	321, 387
Hsp92II	CATG	2 cut(s)	340, 510
Kzo9I	GATC	7 cut(s)	115, 130, 230, 333, 380, 392, 538
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	27, 80, 108, 160, 369
MaeI	CTAG	3 cut(s)	375, 408, 414
MaeIII	GTNAC	3 cut(s)	89, 208, 416
MalI	GATC	7 cut(s)	117, 132, 232, 335, 382, 394, 540
MboI	GATC	7 cut(s)	115, 130, 230, 333, 380, 392, 538
MboII	GAAGA	5 cut(s)	53, 357, 360, 375, 494
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	328, 466
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	7 cut(s)	71, 89, 162, 362, 373, 469, 472
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	4 cut(s)	14, 67, 147, 356
MspR9I	CCNGG	4 cut(s)	15, 147, 148, 356
NciI	CCSGG	4 cut(s)	15, 147, 148, 356
NdeII	GATC	7 cut(s)	115, 130, 230, 333, 380, 392, 538
NlaIII	CATG	2 cut(s)	340, 510
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	3 cut(s)	89, 208, 416
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	4 cut(s)	4, 285, 317, 359
PfoI	TCCNGGA	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	36
Sau3AI	GATC	7 cut(s)	115, 130, 230, 333, 380, 392, 538
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	4 cut(s)	15, 147, 148, 356
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	8 cut(s)	26, 48, 76, 114, 144, 157, 266, 557
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	139
SmaI	CCCGGG	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	328, 466
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	3 cut(s)	375, 408, 414
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	4 cut(s)	13, 145, 146, 354
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	561
TaqI	TCGA	1 cut(s)	379
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	2 cut(s)	328, 466
TfiI	GAWTC	4 cut(s)	4, 285, 317, 359
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	3 cut(s)	89, 208, 416
Tsp45I	GTSAC	3 cut(s)	89, 208, 416
TspDTI	ATGAA	4 cut(s)	17, 54, 360, 531
TspMI	CCCGGG	1 cut(s)	146
TspRI	CASTG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	139
XmaI	CCCGGG	1 cut(s)	146
XspI	CTAG	3 cut(s)	375, 408, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.