Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003637

Physical Location & Seq

Genomic Coordinates Reverse (-)

22518691 .. 22519964

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG228500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGATGATAAATATATACAACAGTAGTTCTCTTTCCCTTAATTGGCTCCATTACTTAAATATAATAATTACTTTGTTTACTGTACGAACATTAATGCATATAACATGTACAGGTAAGGCTCTATCTGAGGGTAAGCAGTGGTACTTCTATAGCAGGAGGACGCAAAATCGGGTTACGAGTAGTGGATATTGGAAGCTGTTAGGCACCGAGGAACCTGTCATATCTTCTACTTCTAACAACAAAATTGGAATCAAAAGATACTTCGGGTTCTACGTGGGAAAAGCTCCTTCAGGGATCAAAACAAACTGGACAATGCATGAGTATCGTCTCTCAGCAGTCTCGGATACTTGTGCTTCTTCTTCCACCCCTAGATCATCGAAGAGAAGAGGGCACCGGAAAGCAGTTAATGAATATAGCGGATACGTGTTATGTCGAGTTTATGAGCGCGGAGAAGATGAGGACGATGATGGGACTGAGCTTTCATGTTTGGACGAGGTGTTCTTATCTTTGGATGATCTTGATGAAATAAGTTTGCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

180

Amino Acids

20.57

Weight (kDa)

7.66

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	38 - 110	1.6e-15	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64530 AT5G64530
fragaria_vesca	FvH4_5g30580 FvH4_5g30580 FvH4_5g30580 FvH4_5g30600 FvH4_5g30600 FvH4_5g30600
malus_domestica	MD08G1222300.v1.1 MD15G1415700.v1.1
prunus_persica	Prupe.1G560100_v2.0.a1 Prupe.1G560100_v2.0.a1
pyrus_communis	pycom08g19310 pycom15g36890
rosa_chinensis	RchiOBHm_Chr7g0205441 RchiOBHm_Chr7g0225481
rosa_laevigata	RLG00000001813 RLG00000003381
rosa_multiflora	Rmu_sc0000259.1_g000004 Rmu_sc0006733.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233780 Rroxscaffold_3G00252230
rosa_rugosa	Rorug07G0091500 Rorug07G0091500 Rorug07G0229700.1 Rorug07G0229800.1
rosa_samantha	Rh7AG221700 Rh7AG373500 Rh7BG217500 Rh7BG364600 Rh7CG234400 Rh7CG391600 Rh7DG228500
rosa_wichuraiana	Rw7G019150 Rw7G031690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	203, 390
AccII	CGCG	1 cut(s)	447
AciI	CCGC	2 cut(s)	417, 447
AclWI	GGATC	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	3 cut(s)	84, 109, 143
AfiI	CCNNNNNNNGG	1 cut(s)	42
AflIII	ACRYGT	2 cut(s)	104, 423
AloI	GAACNNNNNNTCC	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	196, 284, 478
AluI	AGCT	3 cut(s)	196, 284, 478
Alw26I	GTCTC	2 cut(s)	332, 343
AlwI	GGATC	1 cut(s)	302
AseI	ATTAAT	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	393
BanI	GGYRCC	2 cut(s)	203, 390
BccI	CCATC	1 cut(s)	461
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciVI	GTATCC	2 cut(s)	337, 413
BcoDI	GTCTC	2 cut(s)	332, 343
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	148
BfuI	GTATCC	2 cut(s)	337, 413
BmiI	GGNNCC	4 cut(s)	47, 205, 213, 392
BsaAI	YACGTR	2 cut(s)	274, 424
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	517
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	3 cut(s)	117, 345, 465
BseNI	ACTGG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	393
Bsh1236I	CGCG	1 cut(s)	447
BshNI	GGYRCC	2 cut(s)	203, 390
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	2 cut(s)	332, 343
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	294, 371, 514
BspACI	CCGC	2 cut(s)	417, 447
BspCNI	CTCAG	3 cut(s)	118, 344, 466
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	4 cut(s)	47, 205, 213, 392
BspPI	GGATC	1 cut(s)	302
BspT107I	GGYRCC	2 cut(s)	203, 390
BsrGI	TGTACA	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	294, 371, 514
Bst4CI	ACNGT	2 cut(s)	23, 82
Bst6I	CTCTTC	2 cut(s)	374, 379
BstAUI	TGTACA	1 cut(s)	107
BstBAI	YACGTR	2 cut(s)	274, 424
BstDEI	CTNAG	3 cut(s)	126, 331, 474
BstF5I	GGATG	1 cut(s)	517
BstFNI	CGCG	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	3 cut(s)	297, 374, 517
BstMAI	GTCTC	2 cut(s)	332, 343
BstMBI	GATC	3 cut(s)	294, 371, 514
BstNSI	RCATGY	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	1 cut(s)	447
BsuI	GTATCC	2 cut(s)	337, 413
BtsCI	GGATG	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	447
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	83, 108, 142
CviAII	CATG	3 cut(s)	105, 317, 483
CviJI	RGCY	5 cut(s)	46, 119, 196, 284, 478
CviKI_1	RGCY	5 cut(s)	46, 119, 196, 284, 478
CviQI	GTAC	3 cut(s)	83, 108, 142
DdeI	CTNAG	3 cut(s)	126, 331, 474
DpnI	GATC	3 cut(s)	296, 373, 516
DpnII	GATC	3 cut(s)	294, 371, 514
Eam1104I	CTCTTC	2 cut(s)	374, 379
EarI	CTCTTC	2 cut(s)	374, 379
Eco57I	CTGAAG	1 cut(s)	273
EcoT22I	ATGCAT	2 cut(s)	99, 318
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	3 cut(s)	108, 320, 486
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	3 cut(s)	104, 316, 482
FokI	GGATG	1 cut(s)	524
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	446
HapII	CCGG	1 cut(s)	394
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	3 cut(s)	108, 320, 486
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HinfI	GANTC	1 cut(s)	249
HpaII	CCGG	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	2 cut(s)	127, 343
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	2 cut(s)	23, 82
HpyCH4IV	ACGT	2 cut(s)	273, 423
HpyCH4V	TGCA	2 cut(s)	97, 316
HpyF3I	CTNAG	3 cut(s)	126, 331, 474
HpySE526I	ACGT	2 cut(s)	273, 423
Hsp92II	CATG	3 cut(s)	108, 320, 486
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	294, 371, 514
LmnI	GCTCC	2 cut(s)	51, 289
LpnPI	CCDG	6 cut(s)	96, 139, 228, 276, 292, 407
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	2 cut(s)	273, 423
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	296, 373, 516
MboI	GATC	3 cut(s)	294, 371, 514
MboII	GAAGA	6 cut(s)	216, 348, 351, 391, 396, 464
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	3 cut(s)	40, 66, 243
MnlI	CCTC	6 cut(s)	121, 150, 202, 380, 451, 487
Mph1103I	ATGCAT	2 cut(s)	99, 318
MseI	TTAA	4 cut(s)	39, 56, 92, 405
MspI	CCGG	1 cut(s)	394
MvnI	CGCG	1 cut(s)	447
NdeII	GATC	3 cut(s)	294, 371, 514
NlaIII	CATG	3 cut(s)	108, 320, 486
NlaIV	GGNNCC	4 cut(s)	47, 205, 213, 392
NsiI	ATGCAT	2 cut(s)	99, 318
NspI	RCATGY	1 cut(s)	108
PciI	ACATGT	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	249
Ppu21I	YACGTR	2 cut(s)	274, 424
PscI	ACATGT	1 cut(s)	104
PshBI	ATTAAT	1 cut(s)	92
PspN4I	GGNNCC	4 cut(s)	47, 205, 213, 392
RsaI	GTAC	3 cut(s)	84, 109, 143
RsaNI	GTAC	3 cut(s)	83, 108, 142
SaqAI	TTAA	4 cut(s)	39, 56, 92, 405
Sau3AI	GATC	3 cut(s)	294, 371, 514
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	8 cut(s)	115, 198, 217, 276, 286, 426, 480, 498
SfcI	CTRYAG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	40, 66, 243
SsiI	CCGC	2 cut(s)	417, 447
SspMI	CTAG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	23, 82
TaiI	ACGT	2 cut(s)	276, 426
TaqI	TCGA	2 cut(s)	377, 433
TasI	AATT	3 cut(s)	40, 66, 243
TatI	WGTACW	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	4 cut(s)	39, 56, 92, 405
Tru9I	TTAA	4 cut(s)	39, 56, 92, 405
TscAI	CASTG	1 cut(s)	143
TspDTI	ATGAA	3 cut(s)	423, 471, 537
TspRI	CASTG	1 cut(s)	143
VspI	ATTAAT	1 cut(s)	92
XceI	RCATGY	1 cut(s)	108
XspI	CTAG	1 cut(s)	369
Zsp2I	ATGCAT	2 cut(s)	99, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.