Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003637

Physical Location & Seq

Genomic Coordinates Forward (+)

45724265 .. 45726152

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G560100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGAGATGACCAGTTTAAGCTCCCTCCTGGATTTCGATTTGACCCGACGGACGAAGAGCTTGTAGTTCATTTCCTTCAACGTAAGGCAGCTCTCTTACCTTTCCATCCCGACGTCATTCCCGATCTCCATCTCTACCCATATGATCCATGGGAACTAGATGGTAAGGCTCTACGTGAGGGAAATAAGTGGTACTTCTACAGCAGGAGGACGCAGAATCGGGTTACAAGCAATGGGTATTGGAAGGCATTAGGCGTTGAGGAACCAGTGATCACAAGAAGCTCTTGTAATTCTACGCACAAAGTTGGGATGAAAAGATACTTGGCTTTTTACGTCGGAGAAGCTCCAAATTCAGGCATCAAAACTAATTGGATAATGCATGAATATCGTCTCTCTCCACTCTCAGCAGGAGATGGAGCTTCTTCTTCTTCTTCTTCTTCCACCACAACAAGATCATCCAAAAGAAGAGGGCATCTCAAAACAGTTAATAATGAATTTAGTGAATACGTTCTATGTCGAGTCTACGAGCGTGATGAAGATGACGACGACGACGATGATGGGACAGTGCTTTCATGCTTGGACGAGGTGTTCTTATCTTTGGATGACCTTGATGAAATAAGTTTGCCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

211

Amino Acids

24.0

Weight (kDa)

4.97

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64530 AT5G64530
fragaria_vesca	FvH4_5g30580 FvH4_5g30580 FvH4_5g30580 FvH4_5g30600 FvH4_5g30600 FvH4_5g30600
malus_domestica	MD08G1222300.v1.1 MD15G1415700.v1.1
prunus_persica	Prupe.1G560100_v2.0.a1 Prupe.1G560100_v2.0.a1
pyrus_communis	pycom08g19310 pycom15g36890
rosa_chinensis	RchiOBHm_Chr7g0205441 RchiOBHm_Chr7g0225481
rosa_laevigata	RLG00000001813 RLG00000003381
rosa_multiflora	Rmu_sc0000259.1_g000004 Rmu_sc0006733.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233780 Rroxscaffold_3G00252230
rosa_rugosa	Rorug07G0091500 Rorug07G0091500 Rorug07G0229700.1 Rorug07G0229800.1
rosa_samantha	Rh7AG221700 Rh7AG373500 Rh7BG217500 Rh7BG364600 Rh7CG234400 Rh7CG391600 Rh7DG228500
rosa_wichuraiana	Rw7G019150 Rw7G031690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	522
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	349, 494
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AloI	GAACNNNNNNTCC	2 cut(s)	572, 604
AluBI	AGCT	6 cut(s)	22, 61, 92, 282, 344, 419
AluI	AGCT	6 cut(s)	22, 61, 92, 282, 344, 419
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	349, 494
Asp700I	GAANNNNTTC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	5 cut(s)	114, 138, 155, 407, 551
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	2 cut(s)	366, 481
BplI	GAGNNNNNCTC	2 cut(s)	459, 491
BsaAI	YACGTR	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	13, 266
Bse3DI	GCAATG	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	4 cut(s)	106, 315, 455, 607
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	13, 266
BseXI	GCAGC	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	124, 145, 270, 452
Bsp19I	CCATGG	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	13, 266
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	4 cut(s)	124, 145, 270, 452
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	484, 565
Bst6I	CTCTTC	2 cut(s)	51, 460
BstACI	GRCGYC	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	403
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	4 cut(s)	106, 315, 455, 607
BstKTI	GATC	4 cut(s)	127, 148, 273, 455
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	124, 145, 270, 452
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	4 cut(s)	106, 315, 455, 607
BtsIMutI	CAGTG	2 cut(s)	273, 570
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	150, 380, 573
CviJI	RGCY	8 cut(s)	22, 61, 92, 170, 282, 326, 344, 419
CviKI_1	RGCY	8 cut(s)	22, 61, 92, 170, 282, 326, 344, 419
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	4 cut(s)	126, 147, 272, 454
DpnII	GATC	4 cut(s)	124, 145, 270, 452
Eam1104I	CTCTTC	2 cut(s)	51, 460
EarI	CTCTTC	2 cut(s)	51, 460
Eco130I	CCWWGG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	3 cut(s)	153, 383, 576
FaiI	YATR	6 cut(s)	142, 144, 151, 381, 514, 574
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 268, 300
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	3 cut(s)	149, 379, 572
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	4 cut(s)	93, 322, 442, 614
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	1 cut(s)	90
HgaI	GACGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	153, 383, 576
HinfI	GANTC	2 cut(s)	217, 519
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	1 cut(s)	338
Hpy188III	TCNNGA	2 cut(s)	110, 122
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	6 cut(s)	52, 116, 338, 548, 551, 554
HpyAV	CCTTC	2 cut(s)	86, 238
HpyCH4III	ACNGT	2 cut(s)	484, 565
HpyCH4IV	ACGT	5 cut(s)	82, 114, 175, 333, 507
HpyCH4V	TGCA	1 cut(s)	379
HpyF3I	CTNAG	1 cut(s)	403
HpySE526I	ACGT	5 cut(s)	82, 114, 175, 333, 507
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	153, 383, 576
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	124, 145, 270, 452
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	27, 349, 416
LpnPI	CCDG	7 cut(s)	15, 26, 42, 190, 279, 339, 393
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	366, 481
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	5 cut(s)	82, 114, 175, 333, 507
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	4 cut(s)	126, 147, 272, 454
MboI	GATC	4 cut(s)	124, 145, 270, 452
MboII	GAAGA	9 cut(s)	68, 414, 417, 420, 423, 426, 429, 477, 548
MluCI	AATT	5 cut(s)	289, 349, 367, 494, 627
MlyI	GAGTC	1 cut(s)	528
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	6 cut(s)	36, 172, 201, 253, 461, 577
Mph1103I	ATGCAT	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	3 cut(s)	18, 486, 631
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	149
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	4 cut(s)	124, 145, 270, 452
NlaIII	CATG	3 cut(s)	153, 383, 576
NlaIV	GGNNCC	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 549
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	264
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	18, 486, 631
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	124, 145, 270, 452
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	1 cut(s)	30
SfaNI	GCATC	2 cut(s)	366, 481
SfcI	CTRYAG	1 cut(s)	199
Sse9I	AATT	5 cut(s)	289, 349, 367, 494, 627
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	484, 565
TaiI	ACGT	5 cut(s)	85, 117, 178, 336, 510
TaqI	TCGA	2 cut(s)	37, 517
TasI	AATT	5 cut(s)	289, 349, 367, 494, 627
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	3 cut(s)	18, 486, 631
Tru9I	TTAA	3 cut(s)	18, 486, 631
TscAI	CASTG	2 cut(s)	273, 570
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	7 cut(s)	59, 326, 396, 507, 549, 561, 627
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	273, 570
XapI	RAATTY	2 cut(s)	349, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	522
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.