Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003637

Physical Location & Seq

Genomic Coordinates Reverse (-)

45515080 .. 45515940

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCAGATAACCCTTCTCAGCTCCCTCCTGGTTTTCGATTTTTCCCAACAGATGAAGAGCTCGTTGTCCATTTCCTTCAACGCAAGGCAACTCTTTTACCCCTCCACCCCGATGTCATTCCTGATCTCGATCTCTGTCCATACGATCCATGGGAGCTAAATGGTAAGGCTCTGTGTGAGGGTAAGCAGTGGTACTTCTATAGCAGGAGGGCGCAAAATCGGGTTACGAGTAATGGATACTGGAAGCCATTAGGCACCGAGGAACCTGTCATATCTTATACTTCTAACAACAAAGTTGGAATCAAAAGATACTTCGGGTTCTACGTGGGAGAAGCTCCATTGGGGATCCAAACAAACTGGACAATGAATGAGTATCGTCTCTCTGCAGATTCTGATACTTATGCCTCTTCCTCCACCACTAGATCATCGAAGAGAAGAGGGCATCGGAAAGCAGAATATAGTGGATACGTGTTGTGTCGAGTTTATGAGTGCGACGAAGATGAGGACGATGATGGGACAGAGCTTTCATGTTTGGACGAGGTGTACTTATCTTTGGATGATCTTGATGAAATAAGTTTTCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

195

Amino Acids

22.44

Weight (kDa)

4.66

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 127	8.1e-34	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64530 AT5G64530
fragaria_vesca	FvH4_5g30580 FvH4_5g30580 FvH4_5g30580 FvH4_5g30600 FvH4_5g30600 FvH4_5g30600
malus_domestica	MD08G1222300.v1.1 MD15G1415700.v1.1
prunus_persica	Prupe.1G560100_v2.0.a1 Prupe.1G560100_v2.0.a1
pyrus_communis	pycom08g19310 pycom15g36890
rosa_chinensis	RchiOBHm_Chr7g0205441 RchiOBHm_Chr7g0225481
rosa_laevigata	RLG00000001813 RLG00000003381
rosa_multiflora	Rmu_sc0000259.1_g000004 Rmu_sc0006733.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233780 Rroxscaffold_3G00252230
rosa_rugosa	Rorug07G0091500 Rorug07G0091500 Rorug07G0229700.1 Rorug07G0229800.1
rosa_samantha	Rh7AG221700 Rh7AG373500 Rh7BG217500 Rh7BG364600 Rh7CG234400 Rh7CG391600 Rh7DG228500
rosa_wichuraiana	Rw7G019150 Rw7G031690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AclWI	GGATC	3 cut(s)	140, 340, 353
AfaI	GTAC	2 cut(s)	194, 545
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	5 cut(s)	22, 61, 157, 335, 523
AluI	AGCT	5 cut(s)	22, 61, 157, 335, 523
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	3 cut(s)	140, 340, 353
AlwNI	CAGNNNCTG	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	214
BamHI	GGATCC	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	2 cut(s)	230, 458
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	2 cut(s)	199, 384
BfuI	GTATCC	2 cut(s)	230, 458
Bme1390I	CCNGG	1 cut(s)	30
BmiI	GGNNCC	3 cut(s)	256, 264, 347
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	451
BsaAI	YACGTR	2 cut(s)	325, 469
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	149, 258
Bse1I	ACTGG	2 cut(s)	245, 362
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	149, 258
BseGI	GGATG	1 cut(s)	562
BseJI	GATNNNNATC	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	245, 362
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	6 cut(s)	124, 130, 145, 345, 422, 559
Bsp19I	CCATGG	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	256, 264, 347
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	3 cut(s)	140, 340, 353
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	245, 362
BssECI	CCNNGG	2 cut(s)	149, 258
BssMI	GATC	6 cut(s)	124, 130, 145, 345, 422, 559
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	4 cut(s)	51, 412, 425, 430
BstBAI	YACGTR	2 cut(s)	325, 469
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	6 cut(s)	127, 133, 148, 348, 425, 562
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	6 cut(s)	124, 130, 145, 345, 422, 559
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	2 cut(s)	199, 384
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BsuI	GTATCC	2 cut(s)	230, 458
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	193, 544
CviAII	CATG	2 cut(s)	150, 528
CviJI	RGCY	7 cut(s)	22, 61, 157, 170, 247, 335, 523
CviKI_1	RGCY	7 cut(s)	22, 61, 157, 170, 247, 335, 523
CviQI	GTAC	2 cut(s)	193, 544
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	6 cut(s)	126, 132, 147, 347, 424, 561
DpnII	GATC	6 cut(s)	124, 130, 145, 345, 422, 559
Eam1104I	CTCTTC	4 cut(s)	51, 412, 425, 430
EarI	CTCTTC	4 cut(s)	51, 412, 425, 430
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	2 cut(s)	153, 531
FaiI	YATR	9 cut(s)	142, 151, 201, 272, 279, 402, 459, 486, 529
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	2 cut(s)	149, 527
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	2 cut(s)	153, 531
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	2 cut(s)	300, 389
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	2 cut(s)	394, 447
Hpy188III	TCNNGA	3 cut(s)	122, 128, 563
Hpy8I	GTNNAC	1 cut(s)	544
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	2 cut(s)	24, 86
HpyCH4IV	ACGT	2 cut(s)	324, 468
HpyCH4V	TGCA	1 cut(s)	386
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	2 cut(s)	324, 468
Hsp92II	CATG	2 cut(s)	153, 531
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	6 cut(s)	124, 130, 145, 345, 422, 559
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	27, 154, 340
LpnPI	CCDG	7 cut(s)	15, 42, 135, 190, 226, 279, 343
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	2 cut(s)	324, 468
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	6 cut(s)	126, 132, 147, 347, 424, 561
MboI	GATC	6 cut(s)	124, 130, 145, 345, 422, 559
MboII	GAAGA	5 cut(s)	68, 399, 442, 447, 509
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	277
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	6 cut(s)	124, 130, 145, 345, 422, 559
NlaIII	CATG	2 cut(s)	153, 531
NlaIV	GGNNCC	3 cut(s)	256, 264, 347
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	300, 389
Ppu21I	YACGTR	2 cut(s)	325, 469
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	256, 264, 347
PstI	CTGCAG	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	345
RsaI	GTAC	2 cut(s)	194, 545
RsaNI	GTAC	2 cut(s)	193, 544
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	51
Sau3AI	GATC	6 cut(s)	124, 130, 145, 345, 422, 559
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	9 cut(s)	24, 63, 159, 268, 327, 337, 471, 525, 543
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	2 cut(s)	199, 384
SmiMI	CAYNNNNRTG	1 cut(s)	111
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	149
TaiI	ACGT	2 cut(s)	327, 471
TaqI	TCGA	4 cut(s)	37, 129, 428, 478
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	2 cut(s)	300, 389
TscAI	CASTG	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	69, 380, 516, 582
TspRI	CASTG	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.