Rh7BG364600
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003637
Physical Location & Seq
Reverse (-)
38898481 .. 38900549
2069 bp
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UTR
Exon/CDS
Intron
Rh7BG364600.1

Sequence Viewer

Length: 567 bp
ATGGTACCATTAATCCAATGCATTCCTGTATATAACAAGACTGCTCTTGCCCTTATTTCGCTCCTTTATTACTTTAATATGCTAGTTACTTTGTTTACTGTACGAACATTAATACATATAACATGTACAGGTAAGGCTCTGTGTGAGGGTAAGCAGAGGTACTTCTATAGCAGGAGGATGCAAAATCGGGTTACGAGTAATGGATATTGGAAGCCATTAGGCACCGAGGAACCTGTCATATCTTTTACTTCTAACAACAAAGTTGGAATCAAAAGATACTTCGGGTTCTACGTGGGAGAAGCTCCTTCGGGGATCCAAACAAACTGGACAATGCATGAGTATCGTCTCTCTGCAGATTCGGATACTTATGCCTCTTCTTCCACCACTAGATCATCGAAGAGAAGAGGGCACCGGAATTCGAAAGCAGTTAATGAATATAGCGGATACGTGTTGTGTCGAGTTTATGAGCGCGACGAAGATGAGGACGATGATGGGACAGAGCTTTCATGTTTGGACGAGGTGTACTTATCTTTGGATGATCTTGATGAAATAAGTTTGCCAAACTAA

Protein Analysis

188

Amino Acids

21.57

Weight (kDa)

5.94

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 46 - 116 3e-13 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 3 cut(s) 4, 221, 408
AccII CGCG 1 cut(s) 471
AciI CCGC 1 cut(s) 441
AclWI GGATC 2 cut(s) 307, 320
AcsI RAATTY 1 cut(s) 415
AfaI GTAC 5 cut(s) 6, 102, 127, 161, 524
AflIII ACRYGT 2 cut(s) 122, 447
AluBI AGCT 2 cut(s) 302, 502
AluI AGCT 2 cut(s) 302, 502
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 2 cut(s) 307, 320
ApoI RAATTY 1 cut(s) 415
AseI ATTAAT 2 cut(s) 11, 110
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 471
AsuII TTCGAA 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 411
BamHI GGATCC 1 cut(s) 312
BanI GGYRCC 3 cut(s) 4, 221, 408
BccI CCATC 1 cut(s) 485
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciVI GTATCC 2 cut(s) 355, 437
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 83, 387
BfmI CTRYAG 2 cut(s) 166, 351
BfuI GTATCC 2 cut(s) 355, 437
BmiI GGNNCC 5 cut(s) 6, 223, 231, 314, 410
BmsI GCATC 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 419
BsaAI YACGTR 2 cut(s) 292, 448
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 2 cut(s) 183, 541
BseNI ACTGG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 411
Bsh1236I CGCG 1 cut(s) 471
BshNI GGYRCC 3 cut(s) 4, 221, 408
BsiSI CCGG 1 cut(s) 412
BslFI GGGAC 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 508
BsmI GAATGC 1 cut(s) 21
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 411
Bsp1407I TGTACA 1 cut(s) 125
Bsp143I GATC 3 cut(s) 312, 389, 538
BspACI CCGC 1 cut(s) 441
BspFNI CGCG 1 cut(s) 471
BspLI GGNNCC 5 cut(s) 6, 223, 231, 314, 410
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 2 cut(s) 307, 320
BspT104I TTCGAA 1 cut(s) 419
BspT107I GGYRCC 3 cut(s) 4, 221, 408
BsrGI TGTACA 1 cut(s) 125
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 3 cut(s) 312, 389, 538
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 3 cut(s) 379, 392, 397
BstAUI TGTACA 1 cut(s) 125
BstBAI YACGTR 2 cut(s) 292, 448
BstBI TTCGAA 1 cut(s) 419
BstF5I GGATG 2 cut(s) 183, 541
BstFNI CGCG 1 cut(s) 471
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 3 cut(s) 315, 392, 541
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 3 cut(s) 312, 389, 538
BstNSI RCATGY 1 cut(s) 126
BstSFI CTRYAG 2 cut(s) 166, 351
BstSLI GKGCMC 1 cut(s) 411
BstUI CGCG 1 cut(s) 471
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuI GTATCC 2 cut(s) 355, 437
BtsCI GGATG 2 cut(s) 183, 541
CfoI GCGC 1 cut(s) 471
Csp6I GTAC 5 cut(s) 5, 101, 126, 160, 523
CviAII CATG 3 cut(s) 123, 335, 507
CviJI RGCY 4 cut(s) 137, 214, 302, 502
CviKI_1 RGCY 4 cut(s) 137, 214, 302, 502
CviQI GTAC 5 cut(s) 5, 101, 126, 160, 523
DpnI GATC 3 cut(s) 314, 391, 540
DpnII GATC 3 cut(s) 312, 389, 538
Eam1104I CTCTTC 3 cut(s) 379, 392, 397
EarI CTCTTC 3 cut(s) 379, 392, 397
EcoRI GAATTC 1 cut(s) 415
EcoT22I ATGCAT 2 cut(s) 23, 336
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 3 cut(s) 126, 338, 510
FaqI GGGAC 1 cut(s) 508
FatI CATG 3 cut(s) 122, 334, 506
FokI GGATG 2 cut(s) 190, 548
FspBI CTAG 2 cut(s) 83, 387
GlaI GCGC 1 cut(s) 470
HapII CCGG 1 cut(s) 412
HhaI GCGC 1 cut(s) 471
Hin1II CATG 3 cut(s) 126, 338, 510
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HinfI GANTC 2 cut(s) 267, 356
HpaII CCGG 1 cut(s) 412
Hpy166II GTNNAC 2 cut(s) 96, 523
Hpy188I TCNGA 1 cut(s) 361
Hpy188III TCNNGA 1 cut(s) 542
Hpy8I GTNNAC 2 cut(s) 96, 523
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 291, 447
HpyCH4V TGCA 4 cut(s) 21, 181, 334, 353
HpySE526I ACGT 2 cut(s) 291, 447
Hsp92II CATG 3 cut(s) 126, 338, 510
HspAI GCGC 1 cut(s) 469
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 3 cut(s) 312, 389, 538
LmnI GCTCC 2 cut(s) 66, 307
LpnPI CCDG 6 cut(s) 39, 114, 157, 246, 310, 425
LweI GCATC 1 cut(s) 168
MaeI CTAG 2 cut(s) 83, 387
MaeII ACGT 2 cut(s) 291, 447
MaeIII GTNAC 2 cut(s) 85, 190
MalI GATC 3 cut(s) 314, 391, 540
MboI GATC 3 cut(s) 312, 389, 538
MboII GAAGA 5 cut(s) 366, 369, 409, 414, 488
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 8 cut(s) 139, 150, 168, 220, 382, 398, 475, 511
Mph1103I ATGCAT 2 cut(s) 23, 336
MseI TTAA 4 cut(s) 11, 75, 110, 429
MspI CCGG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 21
MvnI CGCG 1 cut(s) 471
NdeII GATC 3 cut(s) 312, 389, 538
NlaIII CATG 3 cut(s) 126, 338, 510
NlaIV GGNNCC 5 cut(s) 6, 223, 231, 314, 410
NsiI ATGCAT 2 cut(s) 23, 336
NspI RCATGY 1 cut(s) 126
NspV TTCGAA 1 cut(s) 419
PciI ACATGT 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 21
PfeI GAWTC 2 cut(s) 267, 356
Ppu21I YACGTR 2 cut(s) 292, 448
PscI ACATGT 1 cut(s) 122
PshBI ATTAAT 2 cut(s) 11, 110
PspN4I GGNNCC 5 cut(s) 6, 223, 231, 314, 410
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 312
RsaI GTAC 5 cut(s) 6, 102, 127, 161, 524
RsaNI GTAC 5 cut(s) 5, 101, 126, 160, 523
SaqAI TTAA 4 cut(s) 11, 75, 110, 429
Sau3AI GATC 3 cut(s) 312, 389, 538
SduI GDGCHC 1 cut(s) 411
SetI ASST 8 cut(s) 133, 161, 235, 294, 304, 450, 504, 522
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 2 cut(s) 166, 351
SfuI TTCGAA 1 cut(s) 419
Sse9I AATT 1 cut(s) 415
SsiI CCGC 1 cut(s) 441
SspMI CTAG 2 cut(s) 83, 387
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 294, 450
TaqI TCGA 3 cut(s) 395, 419, 457
TasI AATT 1 cut(s) 415
TatI WGTACW 2 cut(s) 125, 522
TfiI GAWTC 2 cut(s) 267, 356
Tru1I TTAA 4 cut(s) 11, 75, 110, 429
Tru9I TTAA 4 cut(s) 11, 75, 110, 429
TspDTI ATGAA 3 cut(s) 447, 495, 561
VspI ATTAAT 2 cut(s) 11, 110
XapI RAATTY 1 cut(s) 415
XceI RCATGY 1 cut(s) 126
XspI CTAG 2 cut(s) 83, 387
Zsp2I ATGCAT 2 cut(s) 23, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.