Rh7CG234400
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003637
Physical Location & Seq
Reverse (-)
21903215 .. 21904488
1274 bp
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UTR
Exon/CDS
Intron
Rh7CG234400.1

Sequence Viewer

Length: 573 bp
ATGGTACCATTTTTTCAATGCATTCCTTCAATGATGATAAATATATACAACAGTAGTTCTCTTTCCCTTAATTGGCTCCATTACTTAAATATAATAATTACTTTGTTTACTGTACGAACATTAATACATATAACATGTACAGGTAAGGCTCTATCTGAGGGTAAGCAGTGGTACTTCTATAGCAGGAGGACGCAAAATCGGGTTACGAGTAGTGGATATTGGAAGCTGTTAGGCACCGAGGAACCTGTCATATCTTCTACTTCTAACAACAAAATTGGAATCAAAAGATACTTCGGGTTCTACGTGGGAAAAGCTCCTTCAGGGATCAAAACAAACTGGACAATGCATGAGTATCGTCTCTCAGCAGTCTCGGATACTTGTGCTTCTTCTTCCACCCCTAGATCATCGAAGAGAAGAGGGCACCGGAAAGCAGTTAATGAATATAGCGGATACGTGTTATGTCGTGTTTATGAGCGCGGAGAAGATGAGGACGATGATGGGACTGAGCTTTCATGTTTGGACGAGGTGTTCTTATCTTTGGATGATCTTGATGAAATAAGTTTGCCAAACTAA

Protein Analysis

190

Amino Acids

21.7

Weight (kDa)

7.63

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 48 - 120 1.9e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 3 cut(s) 4, 233, 420
AccII CGCG 1 cut(s) 477
AciI CCGC 2 cut(s) 447, 477
AclWI GGATC 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 4 cut(s) 6, 114, 139, 173
AfiI CCNNNNNNNGG 1 cut(s) 72
AflIII ACRYGT 2 cut(s) 134, 453
AgsI TTSAA 2 cut(s) 17, 30
AloI GAACNNNNNNTCC 2 cut(s) 512, 544
AluBI AGCT 3 cut(s) 226, 314, 508
AluI AGCT 3 cut(s) 226, 314, 508
Alw26I GTCTC 2 cut(s) 362, 373
AlwI GGATC 1 cut(s) 332
AseI ATTAAT 1 cut(s) 122
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 477
BaeGI GKGCMC 1 cut(s) 423
BanI GGYRCC 3 cut(s) 4, 233, 420
BccI CCATC 1 cut(s) 491
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciVI GTATCC 2 cut(s) 367, 443
BcoDI GTCTC 2 cut(s) 362, 373
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 178
BfuI GTATCC 2 cut(s) 367, 443
BmiI GGNNCC 5 cut(s) 6, 77, 235, 243, 422
BsaAI YACGTR 2 cut(s) 304, 454
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 423
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 3 cut(s) 147, 375, 495
BseNI ACTGG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 477
BshNI GGYRCC 3 cut(s) 4, 233, 420
BsiSI CCGG 1 cut(s) 424
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 2 cut(s) 362, 373
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 514
BsmI GAATGC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 423
Bsp1407I TGTACA 1 cut(s) 137
Bsp143I GATC 3 cut(s) 324, 401, 544
BspACI CCGC 2 cut(s) 447, 477
BspCNI CTCAG 3 cut(s) 148, 374, 496
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 5 cut(s) 6, 77, 235, 243, 422
BspPI GGATC 1 cut(s) 332
BspT107I GGYRCC 3 cut(s) 4, 233, 420
BsrGI TGTACA 1 cut(s) 137
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 3 cut(s) 324, 401, 544
Bst4CI ACNGT 2 cut(s) 53, 112
Bst6I CTCTTC 2 cut(s) 404, 409
BstAUI TGTACA 1 cut(s) 137
BstBAI YACGTR 2 cut(s) 304, 454
BstDEI CTNAG 3 cut(s) 156, 361, 504
BstF5I GGATG 1 cut(s) 547
BstFNI CGCG 1 cut(s) 477
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 3 cut(s) 327, 404, 547
BstMAI GTCTC 2 cut(s) 362, 373
BstMBI GATC 3 cut(s) 324, 401, 544
BstNSI RCATGY 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 423
BstUI CGCG 1 cut(s) 477
BsuI GTATCC 2 cut(s) 367, 443
BtsCI GGATG 1 cut(s) 547
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 477
CseI GACGC 1 cut(s) 199
Csp6I GTAC 4 cut(s) 5, 113, 138, 172
CviAII CATG 3 cut(s) 135, 347, 513
CviJI RGCY 5 cut(s) 76, 149, 226, 314, 508
CviKI_1 RGCY 5 cut(s) 76, 149, 226, 314, 508
CviQI GTAC 4 cut(s) 5, 113, 138, 172
DdeI CTNAG 3 cut(s) 156, 361, 504
DpnI GATC 3 cut(s) 326, 403, 546
DpnII GATC 3 cut(s) 324, 401, 544
Eam1104I CTCTTC 2 cut(s) 404, 409
EarI CTCTTC 2 cut(s) 404, 409
Eco57I CTGAAG 1 cut(s) 303
EcoT22I ATGCAT 2 cut(s) 23, 348
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 3 cut(s) 138, 350, 516
FaqI GGGAC 1 cut(s) 514
FatI CATG 3 cut(s) 134, 346, 512
FokI GGATG 1 cut(s) 554
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 476
HapII CCGG 1 cut(s) 424
HgaI GACGC 1 cut(s) 199
HhaI GCGC 1 cut(s) 477
Hin1II CATG 3 cut(s) 138, 350, 516
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HinfI GANTC 1 cut(s) 279
HpaII CCGG 1 cut(s) 424
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 157, 373
Hpy188III TCNNGA 1 cut(s) 548
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 36, 327
HpyCH4III ACNGT 2 cut(s) 53, 112
HpyCH4IV ACGT 2 cut(s) 303, 453
HpyCH4V TGCA 2 cut(s) 21, 346
HpyF3I CTNAG 3 cut(s) 156, 361, 504
HpySE526I ACGT 2 cut(s) 303, 453
Hsp92II CATG 3 cut(s) 138, 350, 516
HspAI GCGC 1 cut(s) 475
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 3 cut(s) 324, 401, 544
LmnI GCTCC 2 cut(s) 81, 319
LpnPI CCDG 6 cut(s) 126, 169, 258, 306, 322, 437
MaeI CTAG 1 cut(s) 399
MaeII ACGT 2 cut(s) 303, 453
MaeIII GTNAC 1 cut(s) 202
MalI GATC 3 cut(s) 326, 403, 546
MboI GATC 3 cut(s) 324, 401, 544
MboII GAAGA 6 cut(s) 246, 378, 381, 421, 426, 494
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 3 cut(s) 70, 96, 273
MnlI CCTC 6 cut(s) 151, 180, 232, 410, 481, 517
Mph1103I ATGCAT 2 cut(s) 23, 348
MseI TTAA 4 cut(s) 69, 86, 122, 435
MspI CCGG 1 cut(s) 424
Mva1269I GAATGC 1 cut(s) 21
MvnI CGCG 1 cut(s) 477
NdeII GATC 3 cut(s) 324, 401, 544
NlaIII CATG 3 cut(s) 138, 350, 516
NlaIV GGNNCC 5 cut(s) 6, 77, 235, 243, 422
NsiI ATGCAT 2 cut(s) 23, 348
NspI RCATGY 1 cut(s) 138
PciI ACATGT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 279
Ppu21I YACGTR 2 cut(s) 304, 454
PscI ACATGT 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 122
PspN4I GGNNCC 5 cut(s) 6, 77, 235, 243, 422
RsaI GTAC 4 cut(s) 6, 114, 139, 173
RsaNI GTAC 4 cut(s) 5, 113, 138, 172
SaqAI TTAA 4 cut(s) 69, 86, 122, 435
Sau3AI GATC 3 cut(s) 324, 401, 544
SduI GDGCHC 1 cut(s) 423
SetI ASST 8 cut(s) 145, 228, 247, 306, 316, 456, 510, 528
SfcI CTRYAG 1 cut(s) 178
Sse9I AATT 3 cut(s) 70, 96, 273
SsiI CCGC 2 cut(s) 447, 477
SspMI CTAG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 53, 112
TaiI ACGT 2 cut(s) 306, 456
TaqI TCGA 1 cut(s) 407
TasI AATT 3 cut(s) 70, 96, 273
TatI WGTACW 1 cut(s) 137
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 4 cut(s) 69, 86, 122, 435
Tru9I TTAA 4 cut(s) 69, 86, 122, 435
TscAI CASTG 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 453, 501, 567
TspRI CASTG 1 cut(s) 173
VspI ATTAAT 1 cut(s) 122
XceI RCATGY 1 cut(s) 138
XspI CTAG 1 cut(s) 399
Zsp2I ATGCAT 2 cut(s) 23, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.