Rroxscaffold_3G00252230
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003637
Physical Location & Seq
Forward (+)
46263227 .. 46264306
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252230.1

Sequence Viewer

Length: 594 bp
ATGGCAGATAACCCTTTTCAGCTCCCTCCTGGTTTTCGATTTTTCCCGACAGATGAAGAGCTCGTAGTCCATTTCCTTCAACGCAAGGCAGCTCTCTTACCCCTCCACCCCGATGTCATTCCTGATCTCGATCTCTATCCATACGACCCATGGGAGCTAAATGGTAAGGCCCTGTCTGAGGGTAAGCAGTGGTACTTCTATAGCAGGAGGACGCAAAATCGGGTCACGAGTAGTGGATATTGGAAGCCGTTAGGCACAGAAGAACCTGTCATATCTTCTACTTCTAACAACAAAATTGGAATCAAAAGATACTTCGGGTTCTACGTGGGAGAAGCTCCTTCAGGGATCAAAACAAACTGGACAATGCATGAGTATCGTCTCTCGGCAGTCTCGGATACTTGCGCTTCTTCTTCCACCCCTAGATCATCGAAGAGAAGAGGGCACCGGAAAGCAGTTAATGAATATAGCGGATACGTGTTATGTCGAGTTTATGAGCGCGGCGAAGATGAGGACGATGATGGGACTGAGCTTTCTTGTTTGGACGAGGTGTTCTTATCTTTGGATGATCTTGATGAAATAAGTTTGCCAAACTAA

Protein Analysis

197

Amino Acids

22.53

Weight (kDa)

5.05

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 127 5.3e-36 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 441
AccII CGCG 1 cut(s) 498
AciI CCGC 2 cut(s) 468, 498
AclWI GGATC 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 28
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 6 cut(s) 22, 61, 92, 157, 335, 529
AluI AGCT 6 cut(s) 22, 61, 92, 157, 335, 529
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 2 cut(s) 383, 394
AlwI GGATC 1 cut(s) 353
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 89
AspLEI GCGC 2 cut(s) 404, 498
AspS9I GGNCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 444
BanI GGYRCC 1 cut(s) 441
BanII GRGCYC 1 cut(s) 63
BauI CACGAG 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 512
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 1 cut(s) 30
BciVI GTATCC 2 cut(s) 388, 464
BcoDI GTCTC 2 cut(s) 383, 394
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 199
BfuI GTATCC 2 cut(s) 388, 464
BisI GCNGC 2 cut(s) 90, 499
BlsI GCNGC 2 cut(s) 91, 500
Bme1390I CCNGG 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 443
BmrFI CCNGG 1 cut(s) 30
BsaAI YACGTR 2 cut(s) 325, 475
BsaBI GATNNNNATC 2 cut(s) 129, 135
BsaJI CCNNGG 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 444
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 362
Bse8I GATNNNNATC 2 cut(s) 129, 135
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 568
BseJI GATNNNNATC 2 cut(s) 129, 135
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 168, 516
BseNI ACTGG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 445
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 2 cut(s) 383, 394
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 535
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 63, 444
Bsp143I GATC 5 cut(s) 124, 130, 345, 422, 565
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 2 cut(s) 468, 498
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 169, 517
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 443
BspPI GGATC 1 cut(s) 353
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 441
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 5 cut(s) 124, 130, 345, 422, 565
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 30
Bst6I CTCTTC 3 cut(s) 51, 425, 430
BstBAI YACGTR 2 cut(s) 325, 475
BstDEI CTNAG 2 cut(s) 177, 525
BstDSI CCRYGG 1 cut(s) 149
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 568
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 2 cut(s) 404, 498
BstKTI GATC 5 cut(s) 127, 133, 348, 425, 568
BstMAI GTCTC 2 cut(s) 383, 394
BstMBI GATC 5 cut(s) 124, 130, 345, 422, 565
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 101
BsuI GTATCC 2 cut(s) 388, 464
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 568
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 194
CfoI GCGC 2 cut(s) 404, 498
Cfr13I GGNCC 1 cut(s) 169
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 150, 368
CviJI RGCY 8 cut(s) 22, 61, 92, 157, 170, 247, 335, 529
CviKI_1 RGCY 8 cut(s) 22, 61, 92, 157, 170, 247, 335, 529
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 177, 525
DpnI GATC 5 cut(s) 126, 132, 347, 424, 567
DpnII GATC 5 cut(s) 124, 130, 345, 422, 565
Eam1104I CTCTTC 3 cut(s) 51, 425, 430
EarI CTCTTC 3 cut(s) 51, 425, 430
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 61
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 2 cut(s) 153, 371
FaiI YATR 8 cut(s) 142, 151, 201, 272, 369, 465, 481, 492
FaqI GGGAC 1 cut(s) 535
FatI CATG 2 cut(s) 149, 367
Fnu4HI GCNGC 2 cut(s) 90, 499
FokI GGATG 1 cut(s) 575
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 90, 499
FspBI CTAG 1 cut(s) 420
GlaI GCGC 2 cut(s) 403, 497
GluI GCNGC 2 cut(s) 90, 499
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 445
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 404, 498
Hin1II CATG 2 cut(s) 153, 371
Hin6I GCGC 2 cut(s) 402, 496
HinP1I GCGC 2 cut(s) 402, 496
HinfI GANTC 1 cut(s) 300
HpaII CCGG 1 cut(s) 445
Hpy188I TCNGA 2 cut(s) 178, 394
Hpy188III TCNNGA 5 cut(s) 46, 122, 128, 226, 569
HpyAV CCTTC 2 cut(s) 86, 348
HpyCH4IV ACGT 2 cut(s) 324, 474
HpyCH4V TGCA 1 cut(s) 367
HpyF3I CTNAG 2 cut(s) 177, 525
HpySE526I ACGT 2 cut(s) 324, 474
Hsp92II CATG 2 cut(s) 153, 371
HspAI GCGC 2 cut(s) 402, 496
Kzo9I GATC 5 cut(s) 124, 130, 345, 422, 565
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 3 cut(s) 27, 154, 340
LpnPI CCDG 9 cut(s) 15, 42, 135, 185, 190, 279, 327, 343, 458
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 1 cut(s) 420
MaeII ACGT 2 cut(s) 324, 474
MaeIII GTNAC 1 cut(s) 223
MalI GATC 5 cut(s) 126, 132, 347, 424, 567
MboI GATC 5 cut(s) 124, 130, 345, 422, 565
MboII GAAGA 8 cut(s) 68, 267, 272, 399, 402, 442, 447, 515
MhlI GDGCHC 2 cut(s) 63, 444
MluCI AATT 1 cut(s) 294
MnlI CCTC 7 cut(s) 36, 113, 172, 201, 431, 502, 538
Mph1103I ATGCAT 1 cut(s) 369
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 498
NcoI CCATGG 1 cut(s) 149
NdeII GATC 5 cut(s) 124, 130, 345, 422, 565
NlaIII CATG 2 cut(s) 153, 371
NlaIV GGNNCC 1 cut(s) 443
NmeAIII GCCGAG 1 cut(s) 362
NmuCI GTSAC 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 2 cut(s) 91, 500
Ppu21I YACGTR 2 cut(s) 325, 475
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 443
PspPI GGNCC 1 cut(s) 169
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 111
SacI GAGCTC 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 2 cut(s) 90, 499
Sau3AI GATC 5 cut(s) 124, 130, 345, 422, 565
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 63, 444
SfcI CTRYAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 1 cut(s) 294
SsiI CCGC 2 cut(s) 468, 498
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 149
TaiI ACGT 2 cut(s) 327, 477
TaqI TCGA 4 cut(s) 37, 129, 428, 484
TasI AATT 1 cut(s) 294
TauI GCSGC 1 cut(s) 501
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 69, 474, 588
TspRI CASTG 1 cut(s) 194
XagI CCTNNNNNAGG 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 147
XspI CTAG 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.