Rh7AG221700
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003637
Physical Location & Seq
Reverse (-)
20706444 .. 20707804
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG221700.1

Sequence Viewer

Length: 489 bp
ATGGCAGATAACCCTTTTCAGCTCCCTCCTGGTTTTCGATTTTTCCCGACAGATGAAGAGCTCGTAGTCCATTTCCTTCAACGCAAGGCAGCTCTCTTACCCCTCCACCCCGATGTCATTCCTGATCTCGATCTCTATCCATACGATCCATGGGAGCTAAATGGTAAGGCTCTATCTGAGGGTAAGCAGTGGTACTTCTATAGCAGGAGGACGCAAAATCGGGTTACGAGTAGTGGATATTGGAAGCTGTTAGGCACCGAGGAACCTGTCATATCTTCTACTTCTAACAACAAAATTGGAATCAAAAGATACTTCGGGTTCTACGTGGGAAAAGCTCCTTCAGGGATCAAAACAAACTGGACAATGCATGAGTATCGTCTCTCAGCAGTCTCGGATACTTGTGCTTCTTCTTCCACCCCTAGATCATCGAAGAGAAGAGGGCACCGGAAAGCAGTTAATGTAATCACACTGGCAATAACAAATAGCTAG

Protein Analysis

162

Amino Acids

18.44

Weight (kDa)

9.6

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 127 3.9e-36 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 254, 441
AclWI GGATC 2 cut(s) 140, 353
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 7 cut(s) 22, 61, 92, 157, 247, 335, 486
AluI AGCT 7 cut(s) 22, 61, 92, 157, 247, 335, 486
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 2 cut(s) 383, 394
AlwI GGATC 2 cut(s) 140, 353
ApeKI GCWGC 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 444
BanI GGYRCC 2 cut(s) 254, 441
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 1 cut(s) 30
BciVI GTATCC 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 383, 394
BfaI CTAG 2 cut(s) 420, 487
BfmI CTRYAG 1 cut(s) 199
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 256, 264, 443
BmrFI CCNGG 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 325
BsaBI GATNNNNATC 2 cut(s) 129, 135
BsaJI CCNNGG 2 cut(s) 149, 258
BsaWI WCCGGW 1 cut(s) 444
Bse1I ACTGG 2 cut(s) 362, 474
Bse8I GATNNNNATC 2 cut(s) 129, 135
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 149, 258
BseJI GATNNNNATC 2 cut(s) 129, 135
BseMII CTCAG 2 cut(s) 168, 396
BseNI ACTGG 2 cut(s) 362, 474
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 1 cut(s) 101
BshNI GGYRCC 2 cut(s) 254, 441
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 445
BsmAI GTCTC 2 cut(s) 383, 394
BsmBI CGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 63, 444
Bsp143I GATC 5 cut(s) 124, 130, 145, 345, 422
Bsp19I CCATGG 1 cut(s) 149
BspCNI CTCAG 2 cut(s) 169, 395
BspLI GGNNCC 3 cut(s) 256, 264, 443
BspPI GGATC 2 cut(s) 140, 353
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 254, 441
BsrI ACTGG 2 cut(s) 362, 474
BssECI CCNNGG 2 cut(s) 149, 258
BssMI GATC 5 cut(s) 124, 130, 145, 345, 422
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 30
Bst6I CTCTTC 3 cut(s) 51, 425, 430
BstBAI YACGTR 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 177, 382
BstDSI CCRYGG 1 cut(s) 149
BstKTI GATC 5 cut(s) 127, 133, 148, 348, 425
BstMAI GTCTC 2 cut(s) 383, 394
BstMBI GATC 5 cut(s) 124, 130, 145, 345, 422
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 101
BsuI GTATCC 1 cut(s) 388
BtgI CCRYGG 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 194, 467
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 150, 368
CviJI RGCY 8 cut(s) 22, 61, 92, 157, 170, 247, 335, 486
CviKI_1 RGCY 8 cut(s) 22, 61, 92, 157, 170, 247, 335, 486
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 177, 382
DpnI GATC 5 cut(s) 126, 132, 147, 347, 424
DpnII GATC 5 cut(s) 124, 130, 145, 345, 422
Eam1104I CTCTTC 3 cut(s) 51, 425, 430
EarI CTCTTC 3 cut(s) 51, 425, 430
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 2 cut(s) 153, 371
FaiI YATR 5 cut(s) 142, 151, 201, 272, 369
FatI CATG 2 cut(s) 149, 367
Fnu4HI GCNGC 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 2 cut(s) 420, 487
GluI GCNGC 1 cut(s) 90
HapII CCGG 1 cut(s) 445
HgaI GACGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 153, 371
HinfI GANTC 1 cut(s) 300
HpaII CCGG 1 cut(s) 445
Hpy188I TCNGA 2 cut(s) 178, 394
Hpy188III TCNNGA 3 cut(s) 46, 122, 128
HpyAV CCTTC 2 cut(s) 86, 348
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 1 cut(s) 367
HpyF3I CTNAG 2 cut(s) 177, 382
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 2 cut(s) 153, 371
Kzo9I GATC 5 cut(s) 124, 130, 145, 345, 422
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 3 cut(s) 27, 154, 340
LpnPI CCDG 9 cut(s) 15, 42, 135, 190, 279, 327, 343, 455, 458
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 2 cut(s) 420, 487
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 223
MalI GATC 5 cut(s) 126, 132, 147, 347, 424
MboI GATC 5 cut(s) 124, 130, 145, 345, 422
MboII GAAGA 6 cut(s) 68, 267, 399, 402, 442, 447
MhlI GDGCHC 2 cut(s) 63, 444
MluCI AATT 1 cut(s) 294
MnlI CCTC 6 cut(s) 36, 113, 172, 201, 253, 431
Mph1103I ATGCAT 1 cut(s) 369
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
NcoI CCATGG 1 cut(s) 149
NdeII GATC 5 cut(s) 124, 130, 145, 345, 422
NlaIII CATG 2 cut(s) 153, 371
NlaIV GGNNCC 3 cut(s) 256, 264, 443
NsiI ATGCAT 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 256, 264, 443
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 111
SacI GAGCTC 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 5 cut(s) 124, 130, 145, 345, 422
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 63, 444
SetI ASST 9 cut(s) 24, 63, 94, 159, 249, 268, 327, 337, 488
SfcI CTRYAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 1 cut(s) 294
SspMI CTAG 2 cut(s) 420, 487
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 149
TaiI ACGT 1 cut(s) 327
TaqI TCGA 3 cut(s) 37, 129, 428
TasI AATT 1 cut(s) 294
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 2 cut(s) 194, 474
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 2 cut(s) 194, 474
XcmI CCANNNNNNNNNTGG 1 cut(s) 147
XspI CTAG 2 cut(s) 420, 487
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.