Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003637

Physical Location & Seq

Genomic Coordinates Reverse (-)

18588402 .. 18589765

Gene Structure 1364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG217500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCAGATAACCCTTTTCAGCTCCCTCCTGGTTTTCGATTTTTCCCGACAGATGAAGAGCTCGTAGTCCATTTCCTTCAACGCAAGGCAGCTCTCTTACCCCTCCACCCCGATGTCATTCCTGATCTCGATCTCTATCCATACGATCCATGGGAGCTAAATGGTAAGGCTCTGTCTGAGGGTAAGCAGTGGTACTTCTATAGCAGGAGGACGCAAAATCGGGTTACGAGTAGTGGATATTGGAAGCAGTTAGGCACCGAGGAACCTGTCATATCTTCTACTTCTAACAACAAAATTGGAATCAAAAGATACTTCGGGTTCTACGTGGGAGAAGCTCCTTCAGGGATCAAAACAAACTGGACAATGCATGAGTATCGTCTCTCGGCAGTCTCGGATACTTGCGCTTCCTCTTCCACCCCTAGATCATCGAAGAGAAGAGGGCACCGGAAAGCAGTTAATGTAATCACACTCGCAATAACAAATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

162

Amino Acids

18.46

Weight (kDa)

9.38

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 127	1.7e-36	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64530 AT5G64530
fragaria_vesca	FvH4_5g30580 FvH4_5g30580 FvH4_5g30580 FvH4_5g30600 FvH4_5g30600 FvH4_5g30600
malus_domestica	MD08G1222300.v1.1 MD15G1415700.v1.1
prunus_persica	Prupe.1G560100_v2.0.a1 Prupe.1G560100_v2.0.a1
pyrus_communis	pycom08g19310 pycom15g36890
rosa_chinensis	RchiOBHm_Chr7g0205441 RchiOBHm_Chr7g0225481
rosa_laevigata	RLG00000001813 RLG00000003381
rosa_multiflora	Rmu_sc0000259.1_g000004 Rmu_sc0006733.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233780 Rroxscaffold_3G00252230
rosa_rugosa	Rorug07G0091500 Rorug07G0091500 Rorug07G0229700.1 Rorug07G0229800.1
rosa_samantha	Rh7AG221700 Rh7AG373500 Rh7BG217500 Rh7BG364600 Rh7CG234400 Rh7CG391600 Rh7DG228500
rosa_wichuraiana	Rw7G019150 Rw7G031690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	254, 441
AclWI	GGATC	2 cut(s)	140, 353
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	6 cut(s)	22, 61, 92, 157, 335, 486
AluI	AGCT	6 cut(s)	22, 61, 92, 157, 335, 486
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	383, 394
AlwI	GGATC	2 cut(s)	140, 353
ApeKI	GCWGC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	444
BanI	GGYRCC	2 cut(s)	254, 441
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	383, 394
BfaI	CTAG	2 cut(s)	420, 487
BfmI	CTRYAG	1 cut(s)	199
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	30
BmiI	GGNNCC	3 cut(s)	256, 264, 443
BmrFI	CCNGG	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	325
BsaBI	GATNNNNATC	2 cut(s)	129, 135
BsaJI	CCNNGG	2 cut(s)	149, 258
BsaWI	WCCGGW	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	362
Bse8I	GATNNNNATC	2 cut(s)	129, 135
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	149, 258
BseJI	GATNNNNATC	2 cut(s)	129, 135
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	101
BshNI	GGYRCC	2 cut(s)	254, 441
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	445
BsmAI	GTCTC	2 cut(s)	383, 394
BsmBI	CGTCTC	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	63, 444
Bsp143I	GATC	5 cut(s)	124, 130, 145, 345, 422
Bsp19I	CCATGG	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	256, 264, 443
BspPI	GGATC	2 cut(s)	140, 353
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	2 cut(s)	254, 441
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	149, 258
BssMI	GATC	5 cut(s)	124, 130, 145, 345, 422
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	4 cut(s)	51, 415, 425, 430
BstBAI	YACGTR	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	5 cut(s)	127, 133, 148, 348, 425
BstMAI	GTCTC	2 cut(s)	383, 394
BstMBI	GATC	5 cut(s)	124, 130, 145, 345, 422
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	404
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	2 cut(s)	150, 368
CviJI	RGCY	7 cut(s)	22, 61, 92, 157, 170, 335, 486
CviKI_1	RGCY	7 cut(s)	22, 61, 92, 157, 170, 335, 486
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	5 cut(s)	126, 132, 147, 347, 424
DpnII	GATC	5 cut(s)	124, 130, 145, 345, 422
Eam1104I	CTCTTC	4 cut(s)	51, 415, 425, 430
EarI	CTCTTC	4 cut(s)	51, 415, 425, 430
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	2 cut(s)	153, 371
FaiI	YATR	5 cut(s)	142, 151, 201, 272, 369
FatI	CATG	2 cut(s)	149, 367
Fnu4HI	GCNGC	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	420, 487
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	90
HapII	CCGG	1 cut(s)	445
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	153, 371
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	1 cut(s)	300
HpaII	CCGG	1 cut(s)	445
Hpy188I	TCNGA	2 cut(s)	178, 394
Hpy188III	TCNNGA	3 cut(s)	46, 122, 128
HpyAV	CCTTC	2 cut(s)	86, 348
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	1 cut(s)	367
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	153, 371
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	5 cut(s)	124, 130, 145, 345, 422
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	27, 154, 340
LpnPI	CCDG	8 cut(s)	15, 42, 135, 190, 279, 327, 343, 458
Lsp1109I	GCAGC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	420, 487
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	5 cut(s)	126, 132, 147, 347, 424
MboI	GATC	5 cut(s)	124, 130, 145, 345, 422
MboII	GAAGA	5 cut(s)	68, 267, 402, 442, 447
MhlI	GDGCHC	2 cut(s)	63, 444
MluCI	AATT	1 cut(s)	294
MnlI	CCTC	7 cut(s)	36, 113, 172, 201, 253, 418, 431
Mph1103I	ATGCAT	1 cut(s)	369
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	124, 130, 145, 345, 422
NlaIII	CATG	2 cut(s)	153, 371
NlaIV	GGNNCC	3 cut(s)	256, 264, 443
NmeAIII	GCCGAG	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	369
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	256, 264, 443
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	5 cut(s)	124, 130, 145, 345, 422
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	63, 444
SetI	ASST	8 cut(s)	24, 63, 94, 159, 268, 327, 337, 488
SfcI	CTRYAG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	1 cut(s)	294
SspMI	CTAG	2 cut(s)	420, 487
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	37, 129, 428
TasI	AATT	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XspI	CTAG	2 cut(s)	420, 487
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.