Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003637

Physical Location & Seq

Genomic Coordinates Forward (+)

36858066 .. 36859180

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGAGACGACCAGTTTAAGCTCCCTCCTGGTTTTCGATTTGACCCGACGGACGAAGAACTTGTAGTCCATTTCCTTCAACGTAAGGCAGCTCTCTTACCTTTCCATCCCGATGTCATTCCCGATCTCCATCTCTACCCATATGATCCATGGGAACTAAATGGTAAGGCTTTGAGTGAGGGCAAGCAGTGGTACTTCTACAGCAGGAGGGCACAGAATCGGGTCACGAATAATGGGTACTGGAAAACATTAGGCATTGAAGAAACTATCTTTTCAAGCTCATCTTCTAATCCTACCAAGAAAGTTGGGATGAAAAGATATTTGACGTTTTTCCTTGGAGAAGCTCCAAATTCAGGCATCAAAACTAATTGGATAATGCACGAGTATCGTCTCCCTTCGTCAGCCTCAGATTGTGCTTCTTCTTCCACCACCACCAGTAGATCATCCAAAAGAAGAGGACAATCCAAAACAGAATACAGTGGATACGTTTTGTGTAGAGTCTACGAGCGTGATGAAGAGGATGATGATGATGATGGGACAGAGCTTTCGTGCTTGGACGAAGTGTTCTTATCTTTGGATGATCTTGATGAAATAAGTTTGCCAAATTATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

205

Amino Acids

23.45

Weight (kDa)

4.89

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64530 AT5G64530
fragaria_vesca	FvH4_5g30580 FvH4_5g30580 FvH4_5g30580 FvH4_5g30600 FvH4_5g30600 FvH4_5g30600
malus_domestica	MD08G1222300.v1.1 MD15G1415700.v1.1
prunus_persica	Prupe.1G560100_v2.0.a1 Prupe.1G560100_v2.0.a1
pyrus_communis	pycom08g19310 pycom15g36890
rosa_chinensis	RchiOBHm_Chr7g0205441 RchiOBHm_Chr7g0225481
rosa_laevigata	RLG00000001813 RLG00000003381
rosa_multiflora	Rmu_sc0000259.1_g000004 Rmu_sc0006733.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233780 Rroxscaffold_3G00252230
rosa_rugosa	Rorug07G0091500 Rorug07G0091500 Rorug07G0229700.1 Rorug07G0229800.1
rosa_samantha	Rh7AG221700 Rh7AG373500 Rh7BG217500 Rh7BG364600 Rh7CG234400 Rh7CG391600 Rh7DG228500
rosa_wichuraiana	Rw7G019150 Rw7G031690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	501
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	2 cut(s)	194, 239
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	80, 260, 276
AjnI	CCWGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	4 cut(s)	51, 83, 548, 580
AluBI	AGCT	5 cut(s)	22, 92, 279, 344, 544
AluI	AGCT	5 cut(s)	22, 92, 279, 344, 544
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	349
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
BaeGI	GKGCMC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	3 cut(s)	114, 138, 527
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	199
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	149, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	13, 245, 435
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	149, 334
BseGI	GGATG	5 cut(s)	106, 315, 443, 526, 583
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	3 cut(s)	13, 245, 435
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	4 cut(s)	124, 145, 440, 580
Bsp19I	CCATGG	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	419
BspPI	GGATC	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	13, 245, 435
BssECI	CCNNGG	2 cut(s)	149, 334
BssMI	GATC	4 cut(s)	124, 145, 440, 580
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	2 cut(s)	149, 334
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	2 cut(s)	448, 510
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	5 cut(s)	106, 315, 443, 526, 583
BstKTI	GATC	4 cut(s)	127, 148, 443, 583
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	124, 145, 440, 580
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	5 cut(s)	106, 315, 443, 526, 583
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	194, 484
Cac8I	GCNNGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	193, 238
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	7 cut(s)	22, 92, 170, 279, 344, 404, 544
CviKI_1	RGCY	7 cut(s)	22, 92, 170, 279, 344, 404, 544
CviQI	GTAC	2 cut(s)	193, 238
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	4 cut(s)	126, 147, 442, 582
DpnII	GATC	4 cut(s)	124, 145, 440, 580
Eam1104I	CTCTTC	2 cut(s)	448, 510
EarI	CTCTTC	2 cut(s)	448, 510
Eco130I	CCWWGG	2 cut(s)	149, 334
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	149, 334
ErhI	CCWWGG	2 cut(s)	149, 334
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	1 cut(s)	153
FaiI	YATR	4 cut(s)	142, 144, 151, 609
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	1 cut(s)	149
FauNDI	CATATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	5 cut(s)	93, 322, 430, 533, 590
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	153
HinfI	GANTC	2 cut(s)	217, 498
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	4 cut(s)	110, 122, 226, 584
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	86, 405
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	3 cut(s)	82, 326, 486
HpyCH4V	TGCA	1 cut(s)	379
HpyF3I	CTNAG	1 cut(s)	406
HpySE526I	ACGT	3 cut(s)	82, 326, 486
Hsp92II	CATG	1 cut(s)	153
Kzo9I	GATC	4 cut(s)	124, 145, 440, 580
LmnI	GCTCC	2 cut(s)	27, 349
LpnPI	CCDG	7 cut(s)	15, 26, 42, 190, 226, 339, 448
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	366
MaeII	ACGT	3 cut(s)	82, 326, 486
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	4 cut(s)	126, 147, 442, 582
MboI	GATC	4 cut(s)	124, 145, 440, 580
MboII	GAAGA	7 cut(s)	68, 272, 276, 411, 414, 465, 527
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	4 cut(s)	349, 367, 604, 610
MlyI	GAGTC	1 cut(s)	507
MnlI	CCTC	6 cut(s)	36, 172, 201, 415, 449, 511
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	149
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	4 cut(s)	124, 145, 440, 580
NlaIII	CATG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PsiI	TTATAA	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
RsaI	GTAC	2 cut(s)	194, 239
RsaNI	GTAC	2 cut(s)	193, 238
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	124, 145, 440, 580
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	9 cut(s)	24, 85, 94, 103, 281, 329, 346, 489, 546
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	4 cut(s)	349, 367, 604, 610
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	2 cut(s)	149, 334
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	3 cut(s)	85, 329, 489
TaqI	TCGA	1 cut(s)	37
TasI	AATT	4 cut(s)	349, 367, 604, 610
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	194, 484
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	326, 528, 603
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	194, 484
XapI	RAATTY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.