Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003637

Physical Location & Seq

Genomic Coordinates Forward (+)

28493191 .. 28494535

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1222300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGAGATAACCAGTTTAAGCTCCCTCCTGGTTTTCGATTTGACCCGACGGACGAAGAACTTGTAGTCCATTTCCTTCAACGTAAGGCAACTCTCTTACCTTTCCATCCTGATGTCATTCCCGATCTCCATCTCTACCCATATGATCCGTGGGAACTAAATGGTAAGGCTTTGAGCGAGGGCAAGCAGTGGTACTTCTACAGCAGGAAGGCACAGAATCGGGTCACGAGTAATGGGTACTGGAAAACATTAGGCATTGAAGAACCTATCTTTTCAAGCTCATCTTCTAATTCTACCAGCAAAGTTGGGATGAAAAGATATTTGACGTTTTATGTTGGAGAAGCTCCAAATTCAGGGATCAAAACTAATTGGATAATGCATGAGTATCGTCTCTCTTCGTCAGCCTCAGATTGTGCTTCTTCTTCCACCACCACCACCACCACCACCAGATCTTCCAAAAGAAGAGGGCAACCCAAAACAGAATACAGTGGATATATTTTGTGTCGAGTCTACGAGCGTGATGAAGAGGAGGATGATGATGATGATGGGACAGAGCTTTCATGCTTGGACGAAGTGTTCTTATCTTTGGACGATCTTGATGAAATAAGTTTGCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

207

Amino Acids

23.56

Weight (kDa)

4.82

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 131	1.2e-35	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64530 AT5G64530
fragaria_vesca	FvH4_5g30580 FvH4_5g30580 FvH4_5g30580 FvH4_5g30600 FvH4_5g30600 FvH4_5g30600
malus_domestica	MD08G1222300.v1.1 MD15G1415700.v1.1
prunus_persica	Prupe.1G560100_v2.0.a1 Prupe.1G560100_v2.0.a1
pyrus_communis	pycom08g19310 pycom15g36890
rosa_chinensis	RchiOBHm_Chr7g0205441 RchiOBHm_Chr7g0225481
rosa_laevigata	RLG00000001813 RLG00000003381
rosa_multiflora	Rmu_sc0000259.1_g000004 Rmu_sc0006733.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233780 Rroxscaffold_3G00252230
rosa_rugosa	Rorug07G0091500 Rorug07G0091500 Rorug07G0229700.1 Rorug07G0229800.1
rosa_samantha	Rh7AG221700 Rh7AG373500 Rh7BG217500 Rh7BG364600 Rh7CG234400 Rh7CG391600 Rh7DG228500
rosa_wichuraiana	Rw7G019150 Rw7G031690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	510
AclWI	GGATC	2 cut(s)	140, 365
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	2 cut(s)	194, 239
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	80, 260, 276
AjnI	CCWGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	4 cut(s)	51, 83, 560, 592
AluBI	AGCT	4 cut(s)	22, 279, 344, 556
AluI	AGCT	4 cut(s)	22, 279, 344, 556
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	140, 365
ApoI	RAATTY	1 cut(s)	349
BauI	CACGAG	1 cut(s)	226
BccI	CCATC	3 cut(s)	114, 138, 539
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	199
BglII	AGATCT	1 cut(s)	449
Bme1390I	CCNGG	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	13, 245
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	3 cut(s)	106, 315, 538
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	13, 245
BseRI	GAGGAG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	562
Bsp143I	GATC	5 cut(s)	124, 145, 357, 449, 592
BspCNI	CTCAG	1 cut(s)	419
BspPI	GGATC	2 cut(s)	140, 365
BsrI	ACTGG	2 cut(s)	13, 245
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	5 cut(s)	124, 145, 357, 449, 592
BssSI	CACGAG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	3 cut(s)	400, 457, 519
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	106, 315, 538
BstKTI	GATC	5 cut(s)	127, 148, 360, 452, 595
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	5 cut(s)	124, 145, 357, 449, 592
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	106, 315, 538
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	194, 493
Cac8I	GCNNGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	193, 238
CviAII	CATG	2 cut(s)	380, 561
CviJI	RGCY	6 cut(s)	22, 170, 279, 344, 404, 556
CviKI_1	RGCY	6 cut(s)	22, 170, 279, 344, 404, 556
CviQI	GTAC	2 cut(s)	193, 238
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	5 cut(s)	126, 147, 359, 451, 594
DpnII	GATC	5 cut(s)	124, 145, 357, 449, 592
Eam1104I	CTCTTC	3 cut(s)	400, 457, 519
EarI	CTCTTC	3 cut(s)	400, 457, 519
EcoRII	CCWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	2 cut(s)	383, 564
FaiI	YATR	6 cut(s)	142, 144, 333, 381, 495, 562
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	2 cut(s)	379, 560
FauNDI	CATATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	510
FokI	GGATG	3 cut(s)	93, 322, 545
Hin1II	CATG	2 cut(s)	383, 564
HinfI	GANTC	2 cut(s)	217, 507
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	4 cut(s)	110, 122, 226, 596
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	86, 202
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	2 cut(s)	82, 326
HpyCH4V	TGCA	1 cut(s)	379
HpyF3I	CTNAG	1 cut(s)	406
HpySE526I	ACGT	2 cut(s)	82, 326
Hsp92II	CATG	2 cut(s)	383, 564
Kzo9I	GATC	5 cut(s)	124, 145, 357, 449, 592
LmnI	GCTCC	2 cut(s)	27, 349
LpnPI	CCDG	9 cut(s)	15, 26, 42, 123, 190, 226, 310, 339, 460
MaeII	ACGT	2 cut(s)	82, 326
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	5 cut(s)	126, 147, 359, 451, 594
MboI	GATC	5 cut(s)	124, 145, 357, 449, 592
MboII	GAAGA	9 cut(s)	68, 272, 276, 387, 411, 414, 444, 474, 536
MflI	RGATCY	1 cut(s)	449
MluCI	AATT	4 cut(s)	289, 349, 367, 616
MlyI	GAGTC	1 cut(s)	516
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	6 cut(s)	36, 172, 415, 458, 520, 523
Mph1103I	ATGCAT	1 cut(s)	381
MseI	TTAA	2 cut(s)	18, 619
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	5 cut(s)	124, 145, 357, 449, 592
NlaIII	CATG	2 cut(s)	383, 564
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	449
RsaI	GTAC	2 cut(s)	194, 239
RsaNI	GTAC	2 cut(s)	193, 238
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	18, 619
Sau3AI	GATC	5 cut(s)	124, 145, 357, 449, 592
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	8 cut(s)	24, 85, 103, 268, 281, 329, 346, 558
SfcI	CTRYAG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	4 cut(s)	289, 349, 367, 616
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	2 cut(s)	85, 329
TaqI	TCGA	2 cut(s)	37, 505
TasI	AATT	4 cut(s)	289, 349, 367, 616
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	18, 619
Tru9I	TTAA	2 cut(s)	18, 619
TscAI	CASTG	2 cut(s)	194, 493
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	326, 537, 549, 615
TspGWI	ACGGA	2 cut(s)	65, 138
TspRI	CASTG	2 cut(s)	194, 493
XapI	RAATTY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	510
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.