Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003637

Physical Location & Seq

Genomic Coordinates Forward (+)

20046029 .. 20047416

Gene Structure 1388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCAGATAACCCTTTTCAGCTCCCTCCTGGTTTTCGATTTTTCCCAACAGATGAAGAGCTCGTTGTCCATTTCCTTCAACGCAAGGCAGCTCTCTTACCCCTCCACCCCGATGTCATTCCTGATCTCGATCTCTATCCATACGATCCATGGGAACTAAATGGTACCATTAATCCAATGCATTCCTGTAAGGCTCTGTGTGAGGGTAAGCAGTGGTACTTCTATAGCAGGAGGATGCAAAATCGGGTTACGAGTAATGGATATTGGAAGCCATTAGGCACCGAGGAACCTGTCATATCTTTTACTTCTAACAACAAAGTTGGAATCAAAAGATGCTTCGGGTTCTACGTGGGAGAAGCTCCTTCGGGGATCCAAACAAACTGGACAATGCATGAGTATCGTCTCTCTGCAGATTCGGATACTTATGCCTCTTCTTCCACCACTAGATCATCGAAGAGAAGAGGGCACCGGAATTCGAAAGCAGTTAATGTAATCACACTCGCAGTATCAAGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

172

Amino Acids

19.69

Weight (kDa)

9.01

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 135	3.9e-33	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64530 AT5G64530
fragaria_vesca	FvH4_5g30580 FvH4_5g30580 FvH4_5g30580 FvH4_5g30600 FvH4_5g30600 FvH4_5g30600
malus_domestica	MD08G1222300.v1.1 MD15G1415700.v1.1
prunus_persica	Prupe.1G560100_v2.0.a1 Prupe.1G560100_v2.0.a1
pyrus_communis	pycom08g19310 pycom15g36890
rosa_chinensis	RchiOBHm_Chr7g0205441 RchiOBHm_Chr7g0225481
rosa_laevigata	RLG00000001813 RLG00000003381
rosa_multiflora	Rmu_sc0000259.1_g000004 Rmu_sc0006733.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233780 Rroxscaffold_3G00252230
rosa_rugosa	Rorug07G0091500 Rorug07G0091500 Rorug07G0229700.1 Rorug07G0229800.1
rosa_samantha	Rh7AG221700 Rh7AG373500 Rh7BG217500 Rh7BG364600 Rh7CG234400 Rh7CG391600 Rh7DG228500
rosa_wichuraiana	Rw7G019150 Rw7G031690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	164
AccB1I	GGYRCC	3 cut(s)	164, 278, 465
AclWI	GGATC	3 cut(s)	140, 364, 377
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	2 cut(s)	166, 218
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	4 cut(s)	22, 61, 92, 359
AluI	AGCT	4 cut(s)	22, 61, 92, 359
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	140, 364, 377
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	472
AseI	ATTAAT	1 cut(s)	171
Asp718I	GGTACC	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	468
BamHI	GGATCC	1 cut(s)	369
BanI	GGYRCC	3 cut(s)	164, 278, 465
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	2 cut(s)	223, 408
BfuI	GTATCC	1 cut(s)	412
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	30
BmiI	GGNNCC	5 cut(s)	166, 280, 288, 371, 467
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	2 cut(s)	225, 323
Bpu14I	TTCGAA	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	349
BsaBI	GATNNNNATC	2 cut(s)	129, 135
BsaJI	CCNNGG	2 cut(s)	149, 282
BsaWI	WCCGGW	1 cut(s)	468
Bse1I	ACTGG	1 cut(s)	386
Bse8I	GATNNNNATC	2 cut(s)	129, 135
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	149, 282
BseGI	GGATG	1 cut(s)	240
BseJI	GATNNNNATC	2 cut(s)	129, 135
BseNI	ACTGG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	101
BshNI	GGYRCC	3 cut(s)	164, 278, 465
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	407
BsmBI	CGTCTC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	181
Bsp119I	TTCGAA	1 cut(s)	476
Bsp1286I	GDGCHC	2 cut(s)	63, 468
Bsp143I	GATC	5 cut(s)	124, 130, 145, 369, 446
Bsp19I	CCATGG	1 cut(s)	149
BspLI	GGNNCC	5 cut(s)	166, 280, 288, 371, 467
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	3 cut(s)	140, 364, 377
BspQI	GCTCTTC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	476
BspT107I	GGYRCC	3 cut(s)	164, 278, 465
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	2 cut(s)	149, 282
BssMI	GATC	5 cut(s)	124, 130, 145, 369, 446
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	4 cut(s)	51, 436, 449, 454
BstBAI	YACGTR	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	476
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	5 cut(s)	127, 133, 148, 372, 449
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	5 cut(s)	124, 130, 145, 369, 446
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	2 cut(s)	223, 408
BstSLI	GKGCMC	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	165, 217
CviAII	CATG	2 cut(s)	150, 392
CviJI	RGCY	6 cut(s)	22, 61, 92, 194, 271, 359
CviKI_1	RGCY	6 cut(s)	22, 61, 92, 194, 271, 359
CviQI	GTAC	2 cut(s)	165, 217
DpnI	GATC	5 cut(s)	126, 132, 147, 371, 448
DpnII	GATC	5 cut(s)	124, 130, 145, 369, 446
Eam1104I	CTCTTC	4 cut(s)	51, 436, 449, 454
EarI	CTCTTC	4 cut(s)	51, 436, 449, 454
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	2 cut(s)	183, 393
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	2 cut(s)	153, 395
FaiI	YATR	7 cut(s)	142, 151, 225, 296, 393, 426, 517
FatI	CATG	2 cut(s)	149, 391
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	247
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	1 cut(s)	90
HapII	CCGG	1 cut(s)	469
Hin1II	CATG	2 cut(s)	153, 395
HinfI	GANTC	2 cut(s)	324, 413
HpaII	CCGG	1 cut(s)	469
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	3 cut(s)	122, 128, 510
HpyAV	CCTTC	2 cut(s)	86, 372
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	181, 238, 391, 410
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	153, 395
KpnI	GGTACC	1 cut(s)	168
Kzo9I	GATC	5 cut(s)	124, 130, 145, 369, 446
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	27, 364
LpnPI	CCDG	8 cut(s)	15, 42, 135, 199, 214, 303, 367, 482
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	225, 323
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	5 cut(s)	126, 132, 147, 371, 448
MboI	GATC	5 cut(s)	124, 130, 145, 369, 446
MboII	GAAGA	5 cut(s)	68, 423, 426, 466, 471
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	2 cut(s)	63, 468
MluCI	AATT	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	7 cut(s)	36, 113, 196, 225, 277, 439, 455
Mph1103I	ATGCAT	2 cut(s)	183, 393
MseI	TTAA	2 cut(s)	171, 486
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	124, 130, 145, 369, 446
NlaIII	CATG	2 cut(s)	153, 395
NlaIV	GGNNCC	5 cut(s)	166, 280, 288, 371, 467
NsiI	ATGCAT	2 cut(s)	183, 393
NspV	TTCGAA	1 cut(s)	476
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	2 cut(s)	324, 413
PkrI	GCNGC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	349
PshBI	ATTAAT	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	5 cut(s)	166, 280, 288, 371, 467
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	369
RsaI	GTAC	2 cut(s)	166, 218
RsaNI	GTAC	2 cut(s)	165, 217
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	171, 486
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	5 cut(s)	124, 130, 145, 369, 446
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	63, 468
SetI	ASST	6 cut(s)	24, 63, 94, 292, 351, 361
SfaNI	GCATC	2 cut(s)	225, 323
SfcI	CTRYAG	2 cut(s)	223, 408
SfuI	TTCGAA	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	4 cut(s)	37, 129, 452, 476
TasI	AATT	1 cut(s)	472
TfiI	GAWTC	2 cut(s)	324, 413
Tru1I	TTAA	2 cut(s)	171, 486
Tru9I	TTAA	2 cut(s)	171, 486
TscAI	CASTG	1 cut(s)	218
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	171
XapI	RAATTY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XspI	CTAG	1 cut(s)	444
Zsp2I	ATGCAT	2 cut(s)	183, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.