Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003637

Physical Location & Seq

Genomic Coordinates Forward (+)

19334471 .. 19335380

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTCATTCCCGATCTCCATCTCTACCCATATCGATCCGTGGGAACTAAATGGTAAGGCTTTGAGCGAGGGCAAGCAGTGGTATTTCTACAGCAGGAGGGCACAGAATCGGGTCACAAGTAATGGGTACTGGAAAACATTAGGCATTGAAGAACCTATCTTTTCAAGCTCATCTTCTAATTCTACTAGCAAAGTTGGGATGAAAAGATATTTGACGTTTTATGTTGGAGAAGCTCCAAATTCAGGCATCAAAACTAATTGGATAATGCATGAGTATCGTCTATCTTCGTCAGCCTCAGATTGTGCTTCTTCTTCCACCACCACCACCACCCCCAGATCTTCCAAAAGAAGAGGGCAACCCAAAACAGAATACAGTGGATATGTTCTATGTCGAGTCTACGAGCGTGATGAAGAGGAGGATGATGATGATGATGGGACAGAGCTTTCATGCTTGGACGAAGTGTTCTTATCTTTGGACGATCTTGATGAAATAAGTTTGCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

169

Amino Acids

19.03

Weight (kDa)

4.81

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64530 AT5G64530
fragaria_vesca	FvH4_5g30580 FvH4_5g30580 FvH4_5g30580 FvH4_5g30600 FvH4_5g30600 FvH4_5g30600
malus_domestica	MD08G1222300.v1.1 MD15G1415700.v1.1
prunus_persica	Prupe.1G560100_v2.0.a1 Prupe.1G560100_v2.0.a1
pyrus_communis	pycom08g19310 pycom15g36890
rosa_chinensis	RchiOBHm_Chr7g0205441 RchiOBHm_Chr7g0225481
rosa_laevigata	RLG00000001813 RLG00000003381
rosa_multiflora	Rmu_sc0000259.1_g000004 Rmu_sc0006733.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233780 Rroxscaffold_3G00252230
rosa_rugosa	Rorug07G0091500 Rorug07G0091500 Rorug07G0229700.1 Rorug07G0229800.1
rosa_samantha	Rh7AG221700 Rh7AG373500 Rh7BG217500 Rh7BG364600 Rh7CG234400 Rh7CG391600 Rh7DG228500
rosa_wichuraiana	Rw7G019150 Rw7G031690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	238
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	149, 165
AloI	GAACNNNNNNTCC	2 cut(s)	446, 478
AluBI	AGCT	3 cut(s)	168, 233, 442
AluI	AGCT	3 cut(s)	168, 233, 442
AlwI	GGATC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	103
BccI	CCATC	2 cut(s)	26, 425
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	88
BglII	AGATCT	1 cut(s)	335
BmsI	GCATC	1 cut(s)	255
Bsa29I	ATCGAT	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	17
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	204, 424
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	4 cut(s)	12, 34, 335, 478
BspCNI	CTCAG	1 cut(s)	308
BspDI	ATCGAT	1 cut(s)	33
BspPI	GGATC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	4 cut(s)	12, 34, 335, 478
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	2 cut(s)	343, 405
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	295
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	204, 424
BstKTI	GATC	4 cut(s)	15, 37, 338, 481
BstMBI	GATC	4 cut(s)	12, 34, 335, 478
BstSFI	CTRYAG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
Bsu15I	ATCGAT	1 cut(s)	33
BsuTUI	ATCGAT	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	204, 424
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	2 cut(s)	83, 379
Cac8I	GCNNGC	1 cut(s)	74
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	2 cut(s)	269, 447
CviJI	RGCY	5 cut(s)	59, 168, 233, 293, 442
CviKI_1	RGCY	5 cut(s)	59, 168, 233, 293, 442
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	295
DpnI	GATC	4 cut(s)	14, 36, 337, 480
DpnII	GATC	4 cut(s)	12, 34, 335, 478
Eam1104I	CTCTTC	2 cut(s)	343, 405
EarI	CTCTTC	2 cut(s)	343, 405
EcoT22I	ATGCAT	1 cut(s)	270
FaeI	CATG	2 cut(s)	272, 450
FaiI	YATR	6 cut(s)	30, 222, 270, 381, 388, 448
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	2 cut(s)	268, 446
FblI	GTMKAC	1 cut(s)	396
FokI	GGATG	2 cut(s)	211, 431
FspBI	CTAG	1 cut(s)	186
Hin1II	CATG	2 cut(s)	272, 450
HinfI	GANTC	2 cut(s)	106, 393
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	10, 482
Hpy8I	GTNNAC	1 cut(s)	397
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	268
HpyF3I	CTNAG	1 cut(s)	295
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	272, 450
Kzo9I	GATC	4 cut(s)	12, 34, 335, 478
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	4 cut(s)	79, 115, 228, 346
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	4 cut(s)	14, 36, 337, 480
MboI	GATC	4 cut(s)	12, 34, 335, 478
MboII	GAAGA	8 cut(s)	161, 165, 276, 300, 303, 330, 360, 422
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	4 cut(s)	178, 238, 256, 502
MlyI	GAGTC	1 cut(s)	402
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	6 cut(s)	61, 90, 304, 344, 406, 409
Mph1103I	ATGCAT	1 cut(s)	270
MseI	TTAA	1 cut(s)	505
NdeII	GATC	4 cut(s)	12, 34, 335, 478
NlaIII	CATG	2 cut(s)	272, 450
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	505
Sau3AI	GATC	4 cut(s)	12, 34, 335, 478
SchI	GAGTC	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	5 cut(s)	157, 170, 218, 235, 444
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	88
Sse9I	AATT	4 cut(s)	178, 238, 256, 502
SspMI	CTAG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	33, 391
TasI	AATT	4 cut(s)	178, 238, 256, 502
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TscAI	CASTG	2 cut(s)	83, 379
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	215, 423, 435, 501
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	83, 379
XapI	RAATTY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.