Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003637

Physical Location & Seq

Genomic Coordinates Reverse (-)

21471789 .. 21473097

Gene Structure 1309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCAGATAACCCTTTTCAGCTGCCTCCTGGTTTTCGATTTTTCCCCACAGACGAAGAGCTCGTAGTCCATTTCCTTCAACGCAAGGCAGCTCTCTTACCCCTCCACCCCGATGTCATTCCTGATCTCGATCTCTATCCATACGATCCATGGGAGCTAAATGGTAAGGCTTTGTGCGAGGGTAAGCAGTGGTACTTCTATAGCCGGAGGACGCAAAATCGGGTTACGAGTAATGGATACTGGAAACCCTTAGGCACCGAGGAACCTATCATATCCTCTACTTCTAATAACAGAGTTGGAATCAAGAGATACTTTGGGTTCTACGTGGGAGAAGCTTCTTCCGGGATCAAAACAAATTGGACAATGCATGAGTATCGTCTCTCTTCAGTCTCGGATACTTGCGCTTCTTCTTCCACCACTAGATCATCAAAGAGAAGAGTGCACCGGAAAGCAGTCAATGAGTTCAGCGGATTCGTGTTGTGTCGAGTTTATGAGCGCAACGATGACGAGGAAGATGATGATGGGACAGAGCTTTCATGCTTGGACGAGGTGTTCTTATCTTTGGATGATCTTGATGAAATAAGTTTGCCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

199

Amino Acids

22.79

Weight (kDa)

4.96

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 127	6.6e-36	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64530 AT5G64530
fragaria_vesca	FvH4_5g30580 FvH4_5g30580 FvH4_5g30580 FvH4_5g30600 FvH4_5g30600 FvH4_5g30600
malus_domestica	MD08G1222300.v1.1 MD15G1415700.v1.1
prunus_persica	Prupe.1G560100_v2.0.a1 Prupe.1G560100_v2.0.a1
pyrus_communis	pycom08g19310 pycom15g36890
rosa_chinensis	RchiOBHm_Chr7g0205441 RchiOBHm_Chr7g0225481
rosa_laevigata	RLG00000001813 RLG00000003381
rosa_multiflora	Rmu_sc0000259.1_g000004 Rmu_sc0006733.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233780 Rroxscaffold_3G00252230
rosa_rugosa	Rorug07G0091500 Rorug07G0091500 Rorug07G0229700.1 Rorug07G0229800.1
rosa_samantha	Rh7AG221700 Rh7AG373500 Rh7BG217500 Rh7BG364600 Rh7CG234400 Rh7CG391600 Rh7DG228500
rosa_wichuraiana	Rw7G019150 Rw7G031690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	2 cut(s)	140, 353
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	2 cut(s)	536, 568
AluBI	AGCT	6 cut(s)	22, 61, 92, 157, 335, 532
AluI	AGCT	6 cut(s)	22, 61, 92, 157, 335, 532
Alw21I	GWGCWC	2 cut(s)	63, 444
Alw26I	GTCTC	2 cut(s)	383, 394
Alw44I	GTGCAC	1 cut(s)	440
AlwI	GGATC	2 cut(s)	140, 353
ApaLI	GTGCAC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	22, 89
AspLEI	GCGC	2 cut(s)	404, 498
AsuC2I	CCSGG	1 cut(s)	343
AxyI	CCTNAGG	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	63, 444
BbvI	GCAGC	2 cut(s)	9, 101
BccI	CCATC	1 cut(s)	515
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	2 cut(s)	230, 388
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	383, 394
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	199
BfuI	GTATCC	2 cut(s)	230, 388
BisI	GCNGC	2 cut(s)	23, 90
BlsI	GCNGC	2 cut(s)	24, 91
Bme1390I	CCNGG	2 cut(s)	30, 343
BmiI	GGNNCC	2 cut(s)	256, 264
BmrFI	CCNGG	2 cut(s)	30, 343
BpuMI	CCSGG	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	325
BsaBI	GATNNNNATC	2 cut(s)	129, 135
BsaJI	CCNNGG	2 cut(s)	149, 258
BsaWI	WCCGGW	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	245
Bse21I	CCTNAGG	1 cut(s)	250
Bse8I	GATNNNNATC	2 cut(s)	129, 135
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	149, 258
BseGI	GGATG	1 cut(s)	571
BseJI	GATNNNNATC	2 cut(s)	129, 135
BseNI	ACTGG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	9, 101
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	63, 444
BsiSI	CCGG	3 cut(s)	205, 342, 445
BslFI	GGGAC	1 cut(s)	538
BsmAI	GTCTC	2 cut(s)	383, 394
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	63, 444
Bsp143I	GATC	6 cut(s)	124, 130, 145, 345, 422, 568
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	256, 264
BspPI	GGATC	2 cut(s)	140, 353
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	149, 258
BssMI	GATC	6 cut(s)	124, 130, 145, 345, 422, 568
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	3 cut(s)	51, 388, 430
BstBAI	YACGTR	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	250
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	571
BstHHI	GCGC	2 cut(s)	404, 498
BstKTI	GATC	6 cut(s)	127, 133, 148, 348, 425, 571
BstMAI	GTCTC	2 cut(s)	383, 394
BstMBI	GATC	6 cut(s)	124, 130, 145, 345, 422, 568
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	28, 341
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	9, 101
Bsu36I	CCTNAGG	1 cut(s)	250
BsuI	GTATCC	2 cut(s)	230, 388
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	571
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	194
CfoI	GCGC	2 cut(s)	404, 498
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	150, 368, 537
CviJI	RGCY	8 cut(s)	22, 61, 92, 157, 170, 204, 335, 532
CviKI_1	RGCY	8 cut(s)	22, 61, 92, 157, 170, 204, 335, 532
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	6 cut(s)	126, 132, 147, 347, 424, 570
DpnII	GATC	6 cut(s)	124, 130, 145, 345, 422, 568
Eam1104I	CTCTTC	3 cut(s)	51, 388, 430
EarI	CTCTTC	3 cut(s)	51, 388, 430
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	3 cut(s)	153, 371, 540
FaiI	YATR	7 cut(s)	142, 151, 201, 272, 369, 492, 538
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	3 cut(s)	149, 367, 536
Fnu4HI	GCNGC	2 cut(s)	23, 90
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	23, 90
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	2 cut(s)	403, 497
GluI	GCNGC	2 cut(s)	23, 90
HapII	CCGG	3 cut(s)	205, 342, 445
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	2 cut(s)	404, 498
Hin1II	CATG	3 cut(s)	153, 371, 540
Hin6I	GCGC	2 cut(s)	402, 496
HinP1I	GCGC	2 cut(s)	402, 496
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	2 cut(s)	300, 471
HpaII	CCGG	3 cut(s)	205, 342, 445
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	4 cut(s)	122, 128, 304, 572
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	367, 442
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	153, 371, 540
HspAI	GCGC	2 cut(s)	402, 496
Kzo9I	GATC	6 cut(s)	124, 130, 145, 345, 422, 568
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	15, 42, 135, 218, 226, 355, 458
Lsp1109I	GCAGC	2 cut(s)	9, 101
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	6 cut(s)	126, 132, 147, 347, 424, 570
MboI	GATC	6 cut(s)	124, 130, 145, 345, 422, 568
MboII	GAAGA	7 cut(s)	68, 330, 375, 399, 402, 447, 524
MhlI	GDGCHC	2 cut(s)	63, 444
MluCI	AATT	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	8 cut(s)	36, 113, 172, 201, 253, 286, 502, 541
Mph1103I	ATGCAT	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	111
MspA1I	CMGCKG	2 cut(s)	22, 468
MspI	CCGG	3 cut(s)	205, 342, 445
MspR9I	CCNGG	2 cut(s)	30, 343
MvaI	CCWGG	1 cut(s)	30
NciI	CCSGG	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	6 cut(s)	124, 130, 145, 345, 422, 568
NlaIII	CATG	3 cut(s)	153, 371, 540
NlaIV	GGNNCC	2 cut(s)	256, 264
NsiI	ATGCAT	1 cut(s)	369
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	300, 471
PfoI	TCCNGGA	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	24, 91
Ppu21I	YACGTR	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	256, 264
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	51
SatI	GCNGC	2 cut(s)	23, 90
Sau3AI	GATC	6 cut(s)	124, 130, 145, 345, 422, 568
ScrFI	CCNGG	2 cut(s)	30, 343
SduI	GDGCHC	2 cut(s)	63, 444
SetI	ASST	9 cut(s)	24, 63, 94, 159, 268, 327, 337, 534, 552
SfcI	CTRYAG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	28, 341
StyI	CCWWGG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	37, 129, 484
TasI	AATT	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	300, 471
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	2 cut(s)	22, 89
TspDTI	ATGAA	2 cut(s)	525, 591
TspRI	CASTG	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.