AT5G65950

Trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011992
Physical Location & Seq
Forward (+)
26380123 .. 26385335
5213 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65950.1

Sequence Viewer

Length: 3573 bp
ATGGAGGAATACCCGGAAGAGCTCAGGACGCCACCGGTAAGTCTGGTGGCTCTCTTCGGATACGCGGAGCTACACGCGTCCATTACTAAGTATCTCCACTCCCAGCAGCCTCCCATCAACGCTCTGGCCTTCCCCGACTTCTCTCAAATCTCTCTCCTCCTTGCTCATGATGATCAGATCAGCCGAACCTCCTCCTTCAGAGATCCTCTCAGCGTCTCCGATTCTGCTTCTCCCATTCCTTCCAGATGCGGCGGTATTTTGAAACGGGACTGGTTGCTTAAGCATCGCACCAAGGTCCCTGCACTTGTCGCCGCCTTCTTTCCCTCACATCACATCTTCGGCGATCCAACTCAATGGCTACAGGTCTGCTCCGATCTCGACAGCCTCAAATCCGTAATCCGTCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTCTTCTCCCCACGAGGACATTAGCGACGATCGTCTGGTGGCATTGCGAAAGCGGGCAGAATTAGATTCTAAGTACGTGCTCTTCTTCAATTCCAGCATAGTCTCTGAACTCACGCTCTCTCTCTCCAGACTCGCTTCTGCTTTTGCAGAGTTGGCACTTTCTTATTACAGAGAAGAAGGACGGAGAATCAAAAGCCGAATTGAGAAAAGGAGTTCCAATTCTCTTGATTTGAATGTTCGCTACTGTTTTAAAGTCGCTGTATATGCAGAGTTTCGTAGAGATTGGGGTGAAGCACTGAAGTTTTATGAAGACGCATACCATTCCTTGCACGAGATGATCGGGACATCGACTAGGTTGCCTGCAATACAACGCTTGGTCGAGATCAAAATCATAGCTGAGCAATTGCATTTCAAGATATCAACGCTTTTGTTGCATGGTGGAAAACTCATAGAAGCAGTGACATGGTTTCATCAACATAAAACATCATATGAAAAGGTTGTCGGATCCACAGAATTTATTTTTCTCCATTGGGACTGGATGAGTAGGCAGTTTCTTGTCTTTGCTGAGTTGCTGGAGACAAGCTCAGCAACTGGTCAGAGCTTAACATCCTCAAACCAAGGAACTGCGGAAATATCTTTGACTGAGTTTGAGTTTTACCCTGCCTATTATTATCAGTTGGCTGCTCATTACTTGAAGGATAAGAAATCTGCCCTGGAACTGTTGTTGTCAATGTCTGAAATAGCTCAAGAGATTGATAGCAGCTCTGCATCTATTACTCCTTCAGTCTATGTGGGTCAGTTCGCTCAGTTGCTTGAGAAGGGAGAAGCTATTACACTTCACTCTATAACGGATGAAGAGTACACACGGTATACAATTTCAGAAGCAAAGAGAGTTCAGGATTCCCTTCAAATTATTGCTTGGCTGAAGAGATCTTATGAATCATTTACCAACCTTAAAGCCCAGAGGATGGCTGCTCTTTGTGCCTTTGAAGTAGCCCGGGAGTACTTTGATTTGGCTGATCCCAACAACGCAAAATTCTTTTTCGATATTGCTGCAAACTTGTACAGACAAGAAGGTTGGGTAACTTTGCTCTGGGAGGTGTTGGGTTACCTGCGAGAGTGTTCGAGAAACCTTGATGCTTTGAAAGATTTTGTAGAGTTTTCACTTGAAATGGTTGCCCTGCCTGTAACATCTTATGAGAATTCTGGGAACTTAAGAAACAAAAATTATGGTCCTGGAGGTCCTGCAACAATTTCAGGAAGAGAAAGTATACATCAAGAAGTTTTTACTCTTGTTTGTCGTGAAGCCGAGCTGTTATCATCTACCGAAGGAAGTGGGTTCAAATTAGCCACTGATAGCCCTCTTCATCTCGAGATTGATCTTGTCAGTCCTCTGAGACCTGTTCTCCTAGCTTCAGTTGCTTTTCACGATCAAATGATCAAGCCTCACGCTTTGTGCTCTTTTACGTTGTCACTACTTTCTCATTTACCTCTTCCAGTTGAAATAGATCATCTAGAAGTTCAGTTTAATCAATCTACATGCAACTTTGTCATCAGAAATTCCCAGAGGCCTCTGTGGGCTTCGGCGTCTAACACTGTGAAAAGTGGTAGCCAAGTGGAGAATGCGCCATTGCTGGTGCTTGTGCCGAATAATTGGTTAAGGTTGACATATGCAATCAAGTCTGAGCAAAGCGGCAAGCTTGAGTGTCTTTCAGTTCTTGCAAAATTGGGGCCTCTTTTCACAATCTGTTCAAGAGCCGAGAGTCCTGCTGCAATGGAGGATTTACCTGTCTGGAAGCATGAAAATCGTGTTGAATCTCTGCCAACAAAGGACCCAGTTCTTGCAGTATTTGGCCAGAAAGCTACTCAAGTTGATGAACCCGAACCACAGGTGGACGTCAGTCTAGGTGCTTCTGGTCCTGCCCTAGTTGGAGAAGATTTTGCGATGCCAATCGTGGTAACTTCAAAGGGTCATGCCGTATACAGTGGTGAATTGAAGATTAATCTAGTTGATGTGGGTGGTGGTGGTTTGTTTAGCCCAAGAGAAGCAGAACCGTTTTCTCTAGAAAGCCATCATGTTGAAATCTGTGGTATTGATGGGGCAGAGGGCAACAATGAATCCGAGTCTGAAACAGGGAGCATAAAGAAAATTCAGCAATCTTTTGGGCTGGTTTCTGTTCCATACCTGAAGGAAGGAGAATCATGGTCGTGCAAACTGGAAATCAAGTGGCATAGACCCAAGCCTGTGATGCTTTTTGTGTCATTGGGTTACTTGCCACATGGCAGTGAAGCCAATACCCAAAAAGTTCACATACACAAGAGCTTGCAGATTGAAGGGAAGATGCCTCTTTTAATAAGCAATCGTTTTATGTTGCCATATAGAAGGGATCACCTATTGCTCAATAGGATAAAGCCAGCCCCTGATTCTGAAGACGTGTCTTCTCTGCCGCTGAACGAAAAAAGTGTGTTAGTTGTCAGTGCCAAAAATTGCTCAGAAATAGCGCTGAAACTGGTGTCCATGTCCATTGAATTTGATGATGAACAAGGGGAAACTTCATGTTTGATTCAGCAGGGTGGTGGGTGTGGAGACTCCCCAAGCTCTGCAAATCTTGCGCCAGGGGAAGAGTTCAAAAAGGTTTTCACAGTCATACCAACGACGAGAACTCCAAAGCTTGGTTTGGGATCAATACATTTAAAATGGAGGAGAGAGGGAGGTAACATAACAGAGGCATATGTTTCAACAAAGCACAAACTTCCTGAAGTAAATGTGGAGGCATCACCACTGGTAATGAGTTTGGACTCTCCTCCATATGCCATTCTTGGAGAACCCTTCACTTACGCTGTTAGAATCTGCAACCAGACACAGTTGCTGCAAGAAGCAAAGTTTGGTCTGGCTGATGCACAGAGTTTTGTCCTGTCTGGGTCTCACAGCAATACGGTTTCAGTCCTTCCCAAGTCAGAACACGTCTTAAGTTATAAGCTAGTGCCTCTGACTTGCGGTGAACAGCAACTCCCAAAGATAACTTTGACATCAGCGCGATATGCTGCTGAGTTTCAGCCATCTGCGGTTGCTTCAAGTGTCTTTGTGTTTCCCTCAGCCCCACAAGCCGAGAAAGCCATCTCTACCAGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

1190

Amino Acids

132.23

Weight (kDa)

5.86

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Foie-gras_1 PF11817 270 - 539 8e-82 Foie gras liver health family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65950
fragaria_vesca FvH4_1g10000
malus_domestica MD15G1228100.v1.1
prunus_persica Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1
pyrus_communis pycom15g20290
rosa_chinensis RchiOBHm_Chr2g0096791
rosa_laevigata RLG00000016670 RLG00000023097
rosa_multiflora Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031
rosa_roxburghii Rroxscaffold_2G00145310
rosa_rugosa Rorug02G0060900
rosa_samantha Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700
rosa_wichuraiana Rw2G008370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3414
AatII GACGTC 1 cut(s) 2337
Acc36I ACCTGC 1 cut(s) 1557
AccB7I CCANNNNNTGG 2 cut(s) 1405, 3110
AccI GTMKAC 3 cut(s) 1307, 1708, 2418
AccII CGCG 3 cut(s) 65, 77, 3475
AclWI GGATC 7 cut(s) 197, 338, 936, 949, 1451, 2832, 3127
AcoI YGGCCR 1 cut(s) 2290
AcsI RAATTY 6 cut(s) 950, 1472, 1639, 1996, 2586, 2966
AcuI CTGAAG 8 cut(s) 181, 755, 1203, 1382, 1836, 2645, 2886, 3216
AcyI GRCGYC 3 cut(s) 29, 2024, 2334
AfaI GTAC 4 cut(s) 512, 1298, 1442, 1502
AfeI AGCGCT 1 cut(s) 2940
AfiI CCNNNNNNNGG 2 cut(s) 1405, 3110
AflII CTTAAG 3 cut(s) 278, 1651, 3406
AflIII ACRYGT 3 cut(s) 75, 2871, 3400
AgeI ACCGGT 1 cut(s) 34
AjiI CACGTC 2 cut(s) 2872, 3403
AjnI CCWGG 3 cut(s) 1149, 1672, 3052
AjuI GAANNNNNNNTTGG 2 cut(s) 3306, 3338
AloI GAACNNNNNNTCC 2 cut(s) 3432, 3464
Alw21I GWGCWC 3 cut(s) 24, 519, 1898
Alw26I GTCTC 6 cut(s) 220, 544, 1007, 1828, 3018, 3366
AlwI GGATC 7 cut(s) 197, 338, 936, 949, 1451, 2832, 3127
AlwNI CAGNNNCTG 3 cut(s) 1028, 2858, 3307
Ama87I CYCGRG 2 cut(s) 1434, 1808
Aor51HI AGCGCT 1 cut(s) 2940
AoxI GGCC 4 cut(s) 126, 2006, 2168, 2290
ApeKI GCWGC 8 cut(s) 106, 1118, 1197, 1409, 1490, 2207, 3307, 3482
ApoI RAATTY 6 cut(s) 950, 1472, 1639, 1996, 2586, 2966
AseI ATTAAT 1 cut(s) 2439
AsiGI ACCGGT 1 cut(s) 34
AspLEI GCGC 4 cut(s) 2065, 2941, 3052, 3475
AspS9I GGNCC 7 cut(s) 295, 433, 1670, 1679, 2168, 2269, 2354
AsuC2I CCSGG 3 cut(s) 14, 1435, 1436
AsuHPI GGTGA 5 cut(s) 737, 2438, 2819, 3207, 3449
AvaI CYCGRG 2 cut(s) 1434, 1808
AvaII GGWCC 6 cut(s) 295, 433, 1670, 1679, 2269, 2354
BalI TGGCCA 1 cut(s) 2292
BamHI GGATCC 1 cut(s) 941
BanII GRGCYC 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 503, 535
BauI CACGAG 2 cut(s) 449, 767
BbsI GAAGAC 4 cut(s) 432, 753, 2868, 2874
Bbv12I GWGCWC 3 cut(s) 24, 519, 1898
BbvCI CCTCAGC 1 cut(s) 3532
BbvI GCAGC 8 cut(s) 118, 1105, 1209, 1396, 1477, 2194, 3294, 3469
BccI CCATC 6 cut(s) 122, 1399, 2517, 2528, 3505, 3563
BceAI ACGGC 1 cut(s) 2399
BcgI CGANNNNNNTGC 8 cut(s) 775, 809, 1472, 1506, 2186, 2220, 2225, 2259
BciT130I CCWGG 3 cut(s) 1151, 1674, 3054
BciVI GTATCC 1 cut(s) 53
BclI TGATCA 2 cut(s) 172, 1875
BcnI CCSGG 3 cut(s) 14, 1435, 1436
BcoDI GTCTC 6 cut(s) 220, 544, 1007, 1828, 3018, 3366
BfaI CTAG 8 cut(s) 789, 1847, 1952, 2342, 2363, 2444, 2501, 3419
BfmI CTRYAG 1 cut(s) 359
BfoI RGCGCY 1 cut(s) 2942
BfrI CTTAAG 3 cut(s) 278, 1651, 3406
BfuAI ACCTGC 1 cut(s) 1557
BfuI GTATCC 1 cut(s) 53
BglII AGATCT 1 cut(s) 1367
BlpI GCTNAGC 2 cut(s) 834, 1021
BmcAI AGTACT 1 cut(s) 1442
Bme1390I CCNGG 6 cut(s) 14, 1151, 1435, 1436, 1674, 3054
Bme18I GGWCC 6 cut(s) 295, 433, 1670, 1679, 2269, 2354
BmeT110I CYCGRG 2 cut(s) 1434, 1808
BmgBI CACGTC 2 cut(s) 2872, 3403
BmgT120I GGNCC 7 cut(s) 295, 433, 1670, 1679, 2168, 2269, 2354
BmiI GGNNCC 4 cut(s) 297, 943, 2169, 2271
BmrFI CCNGG 6 cut(s) 14, 1151, 1435, 1436, 1674, 3054
BmrI ACTGGG 1 cut(s) 2267
BmsI GCATC 9 cut(s) 236, 292, 1214, 1564, 2373, 2676, 2769, 3221, 3325
BmuI ACTGGG 1 cut(s) 2267
BoxI GACNNNNGTC 2 cut(s) 468, 2337
BpiI GAAGAC 4 cut(s) 432, 753, 2868, 2874
BplI GAGNNNNNCTC 4 cut(s) 192, 224, 1004, 1036
BpmI CTGGAG 3 cut(s) 547, 1031, 1695
Bpu10I CCTNAGC 2 cut(s) 23, 3532
Bpu1102I GCTNAGC 2 cut(s) 834, 1021
BpuEI CTTGAG 4 cut(s) 1167, 1271, 2159, 2289
BpuMI CCSGG 3 cut(s) 14, 1435, 1436
BsaAI YACGTR 1 cut(s) 514
BsaBI GATNNNNATC 2 cut(s) 824, 2387
BsaHI GRCGYC 3 cut(s) 29, 2024, 2334
BsaI GGTCTC 2 cut(s) 1828, 3366
BsaJI CCNNGG 5 cut(s) 291, 1054, 1149, 1434, 3053
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 6 cut(s) 1827, 1857, 3085, 3115, 3432, 3462
Bsc4I CCNNNNNNNGG 2 cut(s) 1405, 3110
Bse118I RCCGGY 1 cut(s) 34
Bse3DI GCAATG 3 cut(s) 479, 2066, 2217
Bse8I GATNNNNATC 2 cut(s) 824, 2387
BseBI CCWGG 3 cut(s) 1151, 1674, 3054
BseDI CCNNGG 5 cut(s) 291, 1054, 1149, 1434, 3053
BseGI GGATG 4 cut(s) 981, 1043, 1294, 1410
BseJI GATNNNNATC 2 cut(s) 824, 2387
BseLI CCNNNNNNNGG 2 cut(s) 1405, 3110
BseMI GCAATG 3 cut(s) 479, 2066, 2217
BseRI GAGGAG 4 cut(s) 146, 181, 3154, 3231
BseXI GCAGC 8 cut(s) 118, 1105, 1209, 1396, 1477, 2194, 3294, 3469
BseYI CCCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 3 cut(s) 65, 77, 3475
Bsh1285I CGRYCG 1 cut(s) 469
BshFI GGCC 4 cut(s) 128, 2008, 2170, 2292
BshTI ACCGGT 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 469
BsiHKAI GWGCWC 3 cut(s) 24, 519, 1898
BsiHKCI CYCGRG 2 cut(s) 1434, 1808
BsiSI CCGG 3 cut(s) 14, 35, 1435
BslFI GGGAC 5 cut(s) 281, 281, 387, 793, 983
BslI CCNNNNNNNGG 2 cut(s) 1405, 3110
BsmAI GTCTC 6 cut(s) 220, 544, 1007, 1828, 3018, 3366
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 5 cut(s) 281, 281, 387, 793, 983
BsmI GAATGC 1 cut(s) 2065
BsnI GGCC 4 cut(s) 128, 2008, 2170, 2292
Bso31I GGTCTC 2 cut(s) 1828, 3366
BsoBI CYCGRG 2 cut(s) 1434, 1808
Bsp1286I GDGCHC 3 cut(s) 24, 519, 1898
Bsp1407I TGTACA 1 cut(s) 1500
Bsp1720I GCTNAGC 2 cut(s) 834, 1021
BspANI GGCC 4 cut(s) 128, 2008, 2170, 2292
BspFNI CGCG 3 cut(s) 65, 77, 3475
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 4 cut(s) 297, 943, 2169, 2271
BspMI ACCTGC 1 cut(s) 1557
BspPI GGATC 7 cut(s) 197, 338, 936, 949, 1451, 2832, 3127
BspQI GCTCTTC 2 cut(s) 12, 524
BspTI CTTAAG 3 cut(s) 278, 1651, 3406
BspTNI GGTCTC 2 cut(s) 1828, 3366
BsrDI GCAATG 3 cut(s) 479, 2066, 2217
BsrFI RCCGGY 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 1500
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 5 cut(s) 291, 1054, 1149, 1434, 3053
BssNAI GTATAC 3 cut(s) 1308, 1709, 2419
BssNI GRCGYC 3 cut(s) 29, 2024, 2334
BssSI CACGAG 2 cut(s) 449, 767
BssT1I CCWWGG 2 cut(s) 291, 1054
Bst1107I GTATAC 3 cut(s) 1308, 1709, 2419
Bst2BI CACGAG 2 cut(s) 449, 767
Bst2UI CCWGG 3 cut(s) 1151, 1674, 3054
Bst4CI ACNGT 9 cut(s) 683, 1158, 1305, 2035, 2423, 2493, 3082, 3303, 3376
Bst6I CTCTTC 9 cut(s) 12, 59, 524, 1287, 1358, 1693, 1806, 1935, 3054
BstACI GRCGYC 3 cut(s) 29, 2024, 2334
BstAFI CTTAAG 3 cut(s) 278, 1651, 3406
BstAPI GCANNNNNTGC 1 cut(s) 3047
BstAUI TGTACA 1 cut(s) 1500
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 5 cut(s) 492, 798, 2135, 2762, 2853
BstEII GGTNACC 1 cut(s) 1544
BstF5I GGATG 4 cut(s) 981, 1043, 1294, 1410
BstFNI CGCG 3 cut(s) 65, 77, 3475
BstH2I RGCGCY 1 cut(s) 2942
BstHHI GCGC 4 cut(s) 2065, 2941, 3052, 3475
BstMAI GTCTC 6 cut(s) 220, 544, 1007, 1828, 3018, 3366
BstMCI CGRYCG 1 cut(s) 469
BstNI CCWGG 3 cut(s) 1151, 1674, 3054
BstNSI RCATGY 1 cut(s) 1980
BstPAI GACNNNNGTC 2 cut(s) 468, 2337
BstPI GGTNACC 1 cut(s) 1544
BstSCI CCNGG 6 cut(s) 12, 1149, 1433, 1434, 1672, 3052
BstSFI CTRYAG 1 cut(s) 359
BstUI CGCG 3 cut(s) 65, 77, 3475
BstV1I GCAGC 8 cut(s) 118, 1105, 1209, 1396, 1477, 2194, 3294, 3469
BstV2I GAAGAC 4 cut(s) 432, 753, 2868, 2874
BstX2I RGATCY 3 cut(s) 202, 941, 1367
BstXI CCANNNNNNTGG 1 cut(s) 354
BstYI RGATCY 3 cut(s) 202, 941, 1367
BstZ17I GTATAC 3 cut(s) 1308, 1709, 2419
BsuI GTATCC 1 cut(s) 53
BsuRI GGCC 4 cut(s) 128, 2008, 2170, 2292
BtgZI GCGATG 2 cut(s) 269, 2396
BtrI CACGTC 2 cut(s) 2872, 3403
BtsCI GGATG 4 cut(s) 981, 1043, 1294, 1410
BtsI GCAGTG 2 cut(s) 900, 2728
BtsIMutI CAGTG 8 cut(s) 731, 900, 1788, 2031, 2428, 2728, 2920, 3218
BveI ACCTGC 1 cut(s) 1557
Cac8I GCNNGC 5 cut(s) 492, 798, 2135, 2762, 2853
CaiI CAGNNNCTG 3 cut(s) 1028, 2858, 3307
CciI TCATGA 1 cut(s) 166
CfoI GCGC 4 cut(s) 2065, 2941, 3052, 3475
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 7 cut(s) 295, 433, 1670, 1679, 2168, 2269, 2354
Cfr9I CCCGGG 1 cut(s) 1434
CseI GACGC 5 cut(s) 37, 66, 202, 758, 2013
Csp6I GTAC 4 cut(s) 511, 1297, 1441, 1501
CspAI ACCGGT 1 cut(s) 34
CviQI GTAC 4 cut(s) 511, 1297, 1441, 1501
DraI TTTAAA 2 cut(s) 688, 3132
EaeI YGGCCR 1 cut(s) 2290
Eam1104I CTCTTC 9 cut(s) 12, 59, 524, 1287, 1358, 1693, 1806, 1935, 3054
EarI CTCTTC 9 cut(s) 12, 59, 524, 1287, 1358, 1693, 1806, 1935, 3054
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 291, 1054
Eco147I AGGCCT 1 cut(s) 2008
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 2 cut(s) 1828, 3366
Eco32I GATATC 1 cut(s) 855
Eco47I GGWCC 6 cut(s) 295, 433, 1670, 1679, 2269, 2354
Eco47III AGCGCT 1 cut(s) 2940
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 8 cut(s) 181, 755, 1203, 1382, 1836, 2645, 2886, 3216
Eco88I CYCGRG 2 cut(s) 1434, 1808
Eco91I GGTNACC 1 cut(s) 1544
EcoICRI GAGCTC 1 cut(s) 22
EcoO109I RGGNCCY 4 cut(s) 295, 1679, 2168, 2269
EcoO65I GGTNACC 1 cut(s) 1544
EcoRI GAATTC 1 cut(s) 1639
EcoRII CCWGG 3 cut(s) 1149, 1672, 3052
EcoRV GATATC 1 cut(s) 855
EcoT14I CCWWGG 2 cut(s) 291, 1054
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 2 cut(s) 291, 1054
Esp3I CGTCTC 1 cut(s) 220
FaqI GGGAC 5 cut(s) 281, 281, 387, 793, 983
FauI CCCGC 1 cut(s) 483
FauNDI CATATG 4 cut(s) 925, 2107, 3169, 3247
FbaI TGATCA 2 cut(s) 172, 1875
FblI GTMKAC 3 cut(s) 1307, 1708, 2418
FokI GGATG 4 cut(s) 988, 1030, 1301, 1417
FriOI GRGCYC 1 cut(s) 24
FspBI CTAG 8 cut(s) 789, 1847, 1952, 2342, 2363, 2444, 2501, 3419
GlaI GCGC 4 cut(s) 2064, 2940, 3051, 3474
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 3 cut(s) 547, 1031, 1695
HaeII RGCGCY 1 cut(s) 2942
HaeIII GGCC 4 cut(s) 128, 2008, 2170, 2292
HapII CCGG 3 cut(s) 14, 35, 1435
HgaI GACGC 5 cut(s) 37, 66, 202, 758, 2013
HhaI GCGC 4 cut(s) 2065, 2941, 3052, 3475
Hin1I GRCGYC 3 cut(s) 29, 2024, 2334
Hin6I GCGC 4 cut(s) 2063, 2939, 3050, 3473
HinP1I GCGC 4 cut(s) 2063, 2939, 3050, 3473
HincII GTYRAC 1 cut(s) 2103
HindII GTYRAC 1 cut(s) 2103
HindIII AAGCTT 2 cut(s) 2135, 3107
HpaII CCGG 3 cut(s) 14, 35, 1435
HphI GGTGA 5 cut(s) 737, 2438, 2819, 3207, 3449
Hpy166II GTNNAC 8 cut(s) 1299, 1308, 1709, 2103, 2332, 2419, 2746, 3440
Hpy8I GTNNAC 8 cut(s) 1299, 1308, 1709, 2103, 2332, 2419, 2746, 3440
Hpy99I CGWCG 2 cut(s) 467, 3097
HpyCH4III ACNGT 9 cut(s) 683, 1158, 1305, 2035, 2423, 2493, 3082, 3303, 3376
HpyCH4IV ACGT 5 cut(s) 513, 1904, 2334, 2871, 3402
HpySE526I ACGT 5 cut(s) 513, 1904, 2334, 2871, 3402
Hsp92I GRCGYC 3 cut(s) 29, 2024, 2334
HspAI GCGC 4 cut(s) 2063, 2939, 3050, 3473
Ksp22I TGATCA 2 cut(s) 172, 1875
LguI GCTCTTC 2 cut(s) 12, 524
LmnI GCTCC 3 cut(s) 67, 374, 2574
Lsp1109I GCAGC 8 cut(s) 118, 1105, 1209, 1396, 1477, 2194, 3294, 3469
LweI GCATC 9 cut(s) 236, 292, 1214, 1564, 2373, 2676, 2769, 3221, 3325
MaeI CTAG 8 cut(s) 789, 1847, 1952, 2342, 2363, 2444, 2501, 3419
MaeII ACGT 5 cut(s) 513, 1904, 2334, 2871, 3402
MaeIII GTNAC 8 cut(s) 895, 1519, 1544, 1624, 1908, 2395, 2705, 3152
MfeI CAATTG 1 cut(s) 839
MflI RGATCY 3 cut(s) 202, 941, 1367
MhlI GDGCHC 3 cut(s) 24, 519, 1898
MlsI TGGCCA 1 cut(s) 2292
MluI ACGCGT 1 cut(s) 75
MluNI TGGCCA 1 cut(s) 2292
MlyI GAGTC 5 cut(s) 561, 2209, 2570, 3020, 3230
MmeI TCCRAC 3 cut(s) 371, 919, 2347
Mox20I TGGCCA 1 cut(s) 2292
MscI TGGCCA 1 cut(s) 2292
MslI CAYNNNNRTG 2 cut(s) 2644, 2721
Msp20I TGGCCA 1 cut(s) 2292
MspA1I CMGCKG 1 cut(s) 2887
MspCI CTTAAG 3 cut(s) 278, 1651, 3406
MspI CCGG 3 cut(s) 14, 35, 1435
MspR9I CCNGG 6 cut(s) 14, 1151, 1435, 1436, 1674, 3054
MunI CAATTG 1 cut(s) 839
Mva1269I GAATGC 1 cut(s) 2065
MvaI CCWGG 3 cut(s) 1151, 1674, 3054
MvnI CGCG 3 cut(s) 65, 77, 3475
NciI CCSGG 3 cut(s) 14, 1435, 1436
NdeI CATATG 4 cut(s) 925, 2107, 3169, 3247
NlaIV GGNNCC 4 cut(s) 297, 943, 2169, 2271
NmeAIII GCCGAG 3 cut(s) 1771, 2221, 3571
NmuCI GTSAC 2 cut(s) 895, 1908
NspI RCATGY 1 cut(s) 1980
PaeR7I CTCGAG 1 cut(s) 1808
PagI TCATGA 1 cut(s) 166
PceI AGGCCT 1 cut(s) 2008
PciSI GCTCTTC 2 cut(s) 12, 524
PctI GAATGC 1 cut(s) 2065
PflMI CCANNNNNTGG 2 cut(s) 1405, 3110
PfoI TCCNGGA 1 cut(s) 1672
PinAI ACCGGT 1 cut(s) 34
Ple19I CGATCG 1 cut(s) 469
PleI GAGTC 5 cut(s) 561, 2208, 2569, 3020, 3230
PpsI GAGTC 5 cut(s) 561, 2208, 2569, 3020, 3230
Ppu21I YACGTR 1 cut(s) 514
PpuMI RGGWCCY 3 cut(s) 295, 1679, 2269
PshAI GACNNNNGTC 2 cut(s) 468, 2337
PshBI ATTAAT 1 cut(s) 2439
PsiI TTATAA 1 cut(s) 3414
Psp124BI GAGCTC 1 cut(s) 24
Psp5II RGGWCCY 3 cut(s) 295, 1679, 2269
Psp6I CCWGG 3 cut(s) 1149, 1672, 3052
PspEI GGTNACC 1 cut(s) 1544
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 3 cut(s) 1149, 1672, 3052
PspN4I GGNNCC 4 cut(s) 297, 943, 2169, 2271
PspPI GGNCC 7 cut(s) 295, 433, 1670, 1679, 2168, 2269, 2354
PspPPI RGGWCCY 3 cut(s) 295, 1679, 2269
PstNI CAGNNNCTG 3 cut(s) 1028, 2858, 3307
PsuI RGATCY 3 cut(s) 202, 941, 1367
PvuI CGATCG 1 cut(s) 469
RsaI GTAC 4 cut(s) 512, 1298, 1442, 1502
RsaNI GTAC 4 cut(s) 511, 1297, 1441, 1501
RseI CAYNNNNRTG 2 cut(s) 2644, 2721
SacI GAGCTC 1 cut(s) 24
SapI GCTCTTC 2 cut(s) 12, 524
Sau96I GGNCC 7 cut(s) 295, 433, 1670, 1679, 2168, 2269, 2354
ScaI AGTACT 1 cut(s) 1442
SchI GAGTC 5 cut(s) 561, 2209, 2570, 3020, 3230
ScrFI CCNGG 6 cut(s) 14, 1151, 1435, 1436, 1674, 3054
SduI GDGCHC 3 cut(s) 24, 519, 1898
SfaNI GCATC 9 cut(s) 236, 292, 1214, 1564, 2373, 2676, 2769, 3221, 3325
SfcI CTRYAG 1 cut(s) 359
Sfr274I CTCGAG 1 cut(s) 1808
SinI GGWCC 6 cut(s) 295, 433, 1670, 1679, 2269, 2354
SlaI CTCGAG 1 cut(s) 1808
SmaI CCCGGG 1 cut(s) 1436
SmiMI CAYNNNNRTG 2 cut(s) 2644, 2721
SmlI CTYRAG 8 cut(s) 278, 1182, 1250, 1651, 1808, 2138, 2304, 3406
SmoI CTYRAG 8 cut(s) 278, 1182, 1250, 1651, 1808, 2138, 2304, 3406
SseBI AGGCCT 1 cut(s) 2008
SspMI CTAG 8 cut(s) 789, 1847, 1952, 2342, 2363, 2444, 2501, 3419
SstI GAGCTC 1 cut(s) 24
StuI AGGCCT 1 cut(s) 2008
StyD4I CCNGG 6 cut(s) 12, 1149, 1433, 1434, 1672, 3052
StyI CCWWGG 2 cut(s) 291, 1054
TaaI ACNGT 9 cut(s) 683, 1158, 1305, 2035, 2423, 2493, 3082, 3303, 3376
TaiI ACGT 5 cut(s) 516, 1907, 2337, 2874, 3405
TaqI TCGA 6 cut(s) 378, 785, 816, 1482, 1562, 1809
TatI WGTACW 3 cut(s) 1296, 1440, 1500
TauI GCSGC 4 cut(s) 252, 314, 2133, 2887
TscAI CASTG 8 cut(s) 738, 900, 1795, 2038, 2428, 2728, 2920, 3225
TseFI GTSAC 2 cut(s) 895, 1908
TseI GCWGC 8 cut(s) 106, 1118, 1197, 1409, 1490, 2207, 3307, 3482
Tsp45I GTSAC 2 cut(s) 895, 1908
TspGWI ACGGA 4 cut(s) 382, 389, 634, 1301
TspMI CCCGGG 1 cut(s) 1434
TspRI CASTG 8 cut(s) 738, 900, 1795, 2038, 2428, 2728, 2920, 3225
Van91I CCANNNNNTGG 2 cut(s) 1405, 3110
Vha464I CTTAAG 3 cut(s) 278, 1651, 3406
VpaK11BI GGWCC 6 cut(s) 295, 433, 1670, 1679, 2269, 2354
VspI ATTAAT 1 cut(s) 2439
XapI RAATTY 6 cut(s) 950, 1472, 1639, 1996, 2586, 2966
XbaI TCTAGA 2 cut(s) 1951, 2500
XceI RCATGY 1 cut(s) 1980
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 1808
XmaI CCCGGG 1 cut(s) 1434
XmiI GTMKAC 3 cut(s) 1307, 1708, 2418
XspI CTAG 8 cut(s) 789, 1847, 1952, 2342, 2363, 2444, 2501, 3419
ZraI GACGTC 1 cut(s) 2335
ZrmI AGTACT 1 cut(s) 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.