trafficking protein particle complex
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65950 |
| fragaria_vesca | FvH4_1g10000 |
| malus_domestica | MD15G1228100.v1.1 |
| prunus_persica | Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1 |
| pyrus_communis | pycom15g20290 |
| rosa_chinensis | RchiOBHm_Chr2g0096791 |
| rosa_laevigata | RLG00000016670 RLG00000023097 |
| rosa_multiflora | Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00145310 |
| rosa_rugosa | Rorug02G0060900 |
| rosa_samantha | Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700 |
| rosa_wichuraiana | Rw2G008370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1530, 1663 |
| Acc65I | GGTACC | 2 cut(s) | 1186, 2790 |
| AccB1I | GGYRCC | 2 cut(s) | 1186, 2790 |
| AccBSI | CCGCTC | 2 cut(s) | 203, 314 |
| AccI | GTMKAC | 2 cut(s) | 961, 3488 |
| AccII | CGCG | 1 cut(s) | 366 |
| AclWI | GGATC | 2 cut(s) | 611, 3233 |
| AcoI | YGGCCR | 3 cut(s) | 570, 1404, 1972 |
| AcsI | RAATTY | 8 cut(s) | 1067, 1133, 1906, 2204, 2553, 3061, 3261, 3297 |
| AcuI | CTGAAG | 7 cut(s) | 726, 1311, 1809, 2894, 3129, 3141, 3269 |
| AfaI | GTAC | 7 cut(s) | 476, 542, 1188, 1571, 1815, 2792, 2871 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 215, 294, 318, 505, 946, 2248, 2299 |
| AflII | CTTAAG | 1 cut(s) | 3074 |
| AgeI | ACCGGT | 1 cut(s) | 34 |
| AjiI | CACGTC | 1 cut(s) | 2370 |
| AjnI | CCWGG | 6 cut(s) | 123, 1406, 1779, 1855, 2011, 3016 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 636, 668 |
| Alw21I | GWGCWC | 3 cut(s) | 925, 3378, 3418 |
| Alw26I | GTCTC | 5 cut(s) | 540, 690, 986, 2021, 3342 |
| Alw44I | GTGCAC | 1 cut(s) | 3414 |
| AlwI | GGATC | 2 cut(s) | 611, 3233 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2825 |
| Ama87I | CYCGRG | 2 cut(s) | 2392, 3409 |
| AoxI | GGCC | 9 cut(s) | 126, 147, 570, 1404, 1972, 1979, 2323, 2377, 2816 |
| ApaLI | GTGCAC | 1 cut(s) | 3414 |
| ApeKI | GCWGC | 6 cut(s) | 60, 1004, 1097, 1586, 1991, 2065 |
| ApoI | RAATTY | 8 cut(s) | 1067, 1133, 1906, 2204, 2553, 3061, 3261, 3297 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 761, 793 |
| AseI | ATTAAT | 1 cut(s) | 1220 |
| AsiGI | ACCGGT | 1 cut(s) | 34 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1301, 3109, 3282 |
| Asp718I | GGTACC | 2 cut(s) | 1186, 2790 |
| AspLEI | GCGC | 3 cut(s) | 1081, 1278, 1591 |
| AspS9I | GGNCC | 9 cut(s) | 1652, 2138, 2239, 2302, 2324, 2377, 2504, 2989, 2998 |
| AsuHPI | GGTGA | 7 cut(s) | 49, 1014, 1769, 2408, 2756, 3183, 3214 |
| AvaI | CYCGRG | 2 cut(s) | 2392, 3409 |
| AvaII | GGWCC | 7 cut(s) | 1652, 2138, 2239, 2302, 2504, 2989, 2998 |
| BaeGI | GKGCMC | 2 cut(s) | 3218, 3418 |
| BalI | TGGCCA | 3 cut(s) | 572, 1406, 1974 |
| BanI | GGYRCC | 2 cut(s) | 1186, 2790 |
| BanII | GRGCYC | 1 cut(s) | 1385 |
| BbsI | GAAGAC | 2 cut(s) | 621, 2217 |
| Bbv12I | GWGCWC | 3 cut(s) | 925, 3378, 3418 |
| BbvI | GCAGC | 6 cut(s) | 47, 1016, 1084, 1573, 1978, 2052 |
| BccI | CCATC | 8 cut(s) | 89, 497, 509, 1396, 2860, 2933, 2942, 3520 |
| BceAI | ACGGC | 3 cut(s) | 526, 1756, 3457 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1154, 1188 |
| BciT130I | CCWGG | 6 cut(s) | 125, 1408, 1781, 1857, 2013, 3018 |
| BciVI | GTATCC | 1 cut(s) | 1625 |
| BclI | TGATCA | 2 cut(s) | 1918, 2833 |
| BcoDI | GTCTC | 5 cut(s) | 540, 690, 986, 2021, 3342 |
| BfaI | CTAG | 4 cut(s) | 44, 1611, 2808, 3182 |
| BfrI | CTTAAG | 1 cut(s) | 3074 |
| BfuAI | ACCTGC | 2 cut(s) | 1530, 1663 |
| BfuI | GTATCC | 1 cut(s) | 1625 |
| BglII | AGATCT | 1 cut(s) | 1121 |
| BisI | GCNGC | 9 cut(s) | 61, 276, 367, 1005, 1098, 1587, 1992, 2066, 2906 |
| BlsI | GCNGC | 9 cut(s) | 62, 277, 368, 1006, 1099, 1588, 1993, 2067, 2907 |
| BmcAI | AGTACT | 1 cut(s) | 1571 |
| Bme1390I | CCNGG | 6 cut(s) | 125, 1408, 1781, 1857, 2013, 3018 |
| Bme18I | GGWCC | 7 cut(s) | 1652, 2138, 2239, 2302, 2504, 2989, 2998 |
| BmeT110I | CYCGRG | 2 cut(s) | 2392, 3409 |
| BmgBI | CACGTC | 1 cut(s) | 2370 |
| BmgT120I | GGNCC | 9 cut(s) | 1652, 2138, 2239, 2302, 2324, 2377, 2504, 2989, 2998 |
| BmiI | GGNNCC | 9 cut(s) | 239, 884, 1188, 1304, 1397, 2140, 2241, 2792, 3000 |
| BmrFI | CCNGG | 6 cut(s) | 125, 1408, 1781, 1857, 2013, 3018 |
| BmrI | ACTGGG | 3 cut(s) | 709, 955, 3471 |
| BmsI | GCATC | 8 cut(s) | 457, 718, 1225, 1597, 1736, 2852, 3301, 3337 |
| BmuI | ACTGGG | 3 cut(s) | 709, 955, 3471 |
| BpiI | GAAGAC | 2 cut(s) | 621, 2217 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 222, 254 |
| BpmI | CTGGAG | 1 cut(s) | 2664 |
| BpuEI | CTTGAG | 1 cut(s) | 227 |
| Bsa29I | ATCGAT | 1 cut(s) | 1164 |
| BsaAI | YACGTR | 2 cut(s) | 746, 3249 |
| BsaBI | GATNNNNATC | 4 cut(s) | 732, 2475, 2832, 3177 |
| BsaI | GGTCTC | 1 cut(s) | 3342 |
| BsaJI | CCNNGG | 9 cut(s) | 123, 144, 1407, 2235, 2373, 2447, 2466, 3232, 3408 |
| BsaWI | WCCGGW | 1 cut(s) | 34 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 166, 190, 196, 220, 3034, 3064 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 215, 294, 318, 505, 946, 2248, 2299 |
| Bse118I | RCCGGY | 1 cut(s) | 34 |
| Bse1I | ACTGG | 7 cut(s) | 704, 950, 1618, 1875, 1933, 2819, 3466 |
| Bse3DI | GCAATG | 2 cut(s) | 1444, 1750 |
| Bse8I | GATNNNNATC | 4 cut(s) | 732, 2475, 2832, 3177 |
| BseBI | CCWGG | 6 cut(s) | 125, 1408, 1781, 1857, 2013, 3018 |
| BseCI | ATCGAT | 1 cut(s) | 1164 |
| BseDI | CCNNGG | 9 cut(s) | 123, 144, 1407, 2235, 2373, 2447, 2466, 3232, 3408 |
| BseJI | GATNNNNATC | 4 cut(s) | 732, 2475, 2832, 3177 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 215, 294, 318, 505, 946, 2248, 2299 |
| BseMI | GCAATG | 2 cut(s) | 1444, 1750 |
| BseMII | CTCAG | 9 cut(s) | 329, 536, 675, 1050, 1709, 2288, 3045, 3363, 3459 |
| BseNI | ACTGG | 7 cut(s) | 704, 950, 1618, 1875, 1933, 2819, 3466 |
| BseRI | GAGGAG | 4 cut(s) | 146, 195, 230, 277 |
| BseSI | GKGCMC | 2 cut(s) | 3218, 3418 |
| BseXI | GCAGC | 6 cut(s) | 47, 1016, 1084, 1573, 1978, 2052 |
| BseYI | CCCAGC | 2 cut(s) | 758, 3332 |
| BsgI | GTGCAG | 1 cut(s) | 2313 |
| Bsh1236I | CGCG | 1 cut(s) | 366 |
| Bsh1285I | CGRYCG | 2 cut(s) | 201, 295 |
| BshFI | GGCC | 9 cut(s) | 128, 149, 572, 1406, 1974, 1981, 2325, 2379, 2818 |
| BshNI | GGYRCC | 2 cut(s) | 1186, 2790 |
| BshTI | ACCGGT | 1 cut(s) | 34 |
| BshVI | ATCGAT | 1 cut(s) | 1164 |
| BsiEI | CGRYCG | 2 cut(s) | 201, 295 |
| BsiHKAI | GWGCWC | 3 cut(s) | 925, 3378, 3418 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2392, 3409 |
| BsiSI | CCGG | 4 cut(s) | 35, 216, 303, 2785 |
| BslFI | GGGAC | 5 cut(s) | 245, 521, 775, 2339, 2465 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 215, 294, 318, 505, 946, 2248, 2299 |
| BsmAI | GTCTC | 5 cut(s) | 540, 690, 986, 2021, 3342 |
| BsmFI | GGGAC | 5 cut(s) | 245, 521, 775, 2339, 2465 |
| BsmI | GAATGC | 3 cut(s) | 2117, 2252, 2752 |
| BsnI | GGCC | 9 cut(s) | 128, 149, 572, 1406, 1974, 1981, 2325, 2379, 2818 |
| Bso31I | GGTCTC | 1 cut(s) | 3342 |
| BsoBI | CYCGRG | 2 cut(s) | 2392, 3409 |
| Bsp1286I | GDGCHC | 5 cut(s) | 925, 1385, 3218, 3378, 3418 |
| Bsp1407I | TGTACA | 1 cut(s) | 540 |
| Bsp19I | CCATGG | 1 cut(s) | 2466 |
| BspANI | GGCC | 9 cut(s) | 128, 149, 572, 1406, 1974, 1981, 2325, 2379, 2818 |
| BspCNI | CTCAG | 9 cut(s) | 328, 535, 676, 1051, 1710, 2287, 3046, 3364, 3458 |
| BspDI | ATCGAT | 1 cut(s) | 1164 |
| BspFNI | CGCG | 1 cut(s) | 366 |
| BspHI | TCATGA | 2 cut(s) | 1837, 1965 |
| BspLI | GGNNCC | 9 cut(s) | 239, 884, 1188, 1304, 1397, 2140, 2241, 2792, 3000 |
| BspMI | ACCTGC | 2 cut(s) | 1530, 1663 |
| BspPI | GGATC | 2 cut(s) | 611, 3233 |
| BspQI | GCTCTTC | 1 cut(s) | 2277 |
| BspT107I | GGYRCC | 2 cut(s) | 1186, 2790 |
| BspTI | CTTAAG | 1 cut(s) | 3074 |
| BspTNI | GGTCTC | 1 cut(s) | 3342 |
| BsrBI | CCGCTC | 2 cut(s) | 203, 314 |
| BsrDI | GCAATG | 2 cut(s) | 1444, 1750 |
| BsrFI | RCCGGY | 1 cut(s) | 34 |
| BsrGI | TGTACA | 1 cut(s) | 540 |
| BsrI | ACTGG | 7 cut(s) | 704, 950, 1618, 1875, 1933, 2819, 3466 |
| BssAI | RCCGGY | 1 cut(s) | 34 |
| BssECI | CCNNGG | 9 cut(s) | 123, 144, 1407, 2235, 2373, 2447, 2466, 3232, 3408 |
| BssT1I | CCWWGG | 6 cut(s) | 144, 2235, 2373, 2447, 2466, 3232 |
| Bst2UI | CCWGG | 6 cut(s) | 125, 1408, 1781, 1857, 2013, 3018 |
| Bst6I | CTCTTC | 6 cut(s) | 287, 688, 1112, 1260, 2277, 3018 |
| BstAFI | CTTAAG | 1 cut(s) | 3074 |
| BstAUI | TGTACA | 1 cut(s) | 540 |
| BstBAI | YACGTR | 2 cut(s) | 746, 3249 |
| BstC8I | GCNNGC | 6 cut(s) | 456, 570, 574, 890, 1077, 2729 |
| BstDSI | CCRYGG | 1 cut(s) | 2466 |
| BstEII | GGTNACC | 2 cut(s) | 1517, 2221 |
| BstFNI | CGCG | 1 cut(s) | 366 |
| BstHHI | GCGC | 3 cut(s) | 1081, 1278, 1591 |
| BstMAI | GTCTC | 5 cut(s) | 540, 690, 986, 2021, 3342 |
| BstMCI | CGRYCG | 2 cut(s) | 201, 295 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 235, 244, 680, 929, 1434, 1655, 1829, 2914, 3413 |
| BstNI | CCWGG | 6 cut(s) | 125, 1408, 1781, 1857, 2013, 3018 |
| BstPI | GGTNACC | 2 cut(s) | 1517, 2221 |
| BstSCI | CCNGG | 6 cut(s) | 123, 1406, 1779, 1855, 2011, 3016 |
| BstSLI | GKGCMC | 2 cut(s) | 3218, 3418 |
| BstUI | CGCG | 1 cut(s) | 366 |
| BstV1I | GCAGC | 6 cut(s) | 47, 1016, 1084, 1573, 1978, 2052 |
| BstV2I | GAAGAC | 2 cut(s) | 621, 2217 |
| BstX2I | RGATCY | 2 cut(s) | 1121, 3238 |
| BstYI | RGATCY | 2 cut(s) | 1121, 3238 |
| Bsu15I | ATCGAT | 1 cut(s) | 1164 |
| BsuI | GTATCC | 1 cut(s) | 1625 |
| BsuRI | GGCC | 9 cut(s) | 128, 149, 572, 1406, 1974, 1981, 2325, 2379, 2818 |
| BsuTUI | ATCGAT | 1 cut(s) | 1164 |
| BtgI | CCRYGG | 1 cut(s) | 2466 |
| BtgZI | GCGATG | 1 cut(s) | 528 |
| BtrI | CACGTC | 1 cut(s) | 2370 |
| BtsI | GCAGTG | 1 cut(s) | 1038 |
| BtsIMutI | CAGTG | 8 cut(s) | 57, 323, 943, 1038, 1868, 2330, 2535, 3042 |
| BveI | ACCTGC | 2 cut(s) | 1530, 1663 |
| Cac8I | GCNNGC | 6 cut(s) | 456, 570, 574, 890, 1077, 2729 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2825 |
| CciI | TCATGA | 2 cut(s) | 1837, 1965 |
| CfoI | GCGC | 3 cut(s) | 1081, 1278, 1591 |
| Cfr10I | RCCGGY | 1 cut(s) | 34 |
| Cfr13I | GGNCC | 9 cut(s) | 1652, 2138, 2239, 2302, 2324, 2377, 2504, 2989, 2998 |
| ClaI | ATCGAT | 1 cut(s) | 1164 |
| CsiI | ACCWGGT | 1 cut(s) | 2011 |
| Csp6I | GTAC | 7 cut(s) | 475, 541, 1187, 1570, 1814, 2791, 2870 |
| CspAI | ACCGGT | 1 cut(s) | 34 |
| CviQI | GTAC | 7 cut(s) | 475, 541, 1187, 1570, 1814, 2791, 2870 |
| EaeI | YGGCCR | 3 cut(s) | 570, 1404, 1972 |
| Eam1104I | CTCTTC | 6 cut(s) | 287, 688, 1112, 1260, 2277, 3018 |
| EarI | CTCTTC | 6 cut(s) | 287, 688, 1112, 1260, 2277, 3018 |
| EciI | GGCGGA | 1 cut(s) | 875 |
| Eco130I | CCWWGG | 6 cut(s) | 144, 2235, 2373, 2447, 2466, 3232 |
| Eco147I | AGGCCT | 2 cut(s) | 149, 1981 |
| Eco24I | GRGCYC | 1 cut(s) | 1385 |
| Eco31I | GGTCTC | 1 cut(s) | 3342 |
| Eco47I | GGWCC | 7 cut(s) | 1652, 2138, 2239, 2302, 2504, 2989, 2998 |
| Eco57I | CTGAAG | 7 cut(s) | 726, 1311, 1809, 2894, 3129, 3141, 3269 |
| Eco88I | CYCGRG | 2 cut(s) | 2392, 3409 |
| Eco91I | GGTNACC | 2 cut(s) | 1517, 2221 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2138, 2239, 2989 |
| EcoO65I | GGTNACC | 2 cut(s) | 1517, 2221 |
| EcoRI | GAATTC | 2 cut(s) | 3061, 3261 |
| EcoRII | CCWGG | 6 cut(s) | 123, 1406, 1779, 1855, 2011, 3016 |
| EcoT14I | CCWWGG | 6 cut(s) | 144, 2235, 2373, 2447, 2466, 3232 |
| EcoT22I | ATGCAT | 2 cut(s) | 1240, 2117 |
| EcoT38I | GRGCYC | 1 cut(s) | 1385 |
| ErhI | CCWWGG | 6 cut(s) | 144, 2235, 2373, 2447, 2466, 3232 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2161, 2193, 2289, 2321 |
| FaqI | GGGAC | 5 cut(s) | 245, 521, 775, 2339, 2465 |
| FauI | CCCGC | 2 cut(s) | 220, 319 |
| FbaI | TGATCA | 2 cut(s) | 1918, 2833 |
| FblI | GTMKAC | 2 cut(s) | 961, 3488 |
| Fnu4HI | GCNGC | 9 cut(s) | 61, 276, 367, 1005, 1098, 1587, 1992, 2066, 2906 |
| FriOI | GRGCYC | 1 cut(s) | 1385 |
| Fsp4HI | GCNGC | 9 cut(s) | 61, 276, 367, 1005, 1098, 1587, 1992, 2066, 2906 |
| FspBI | CTAG | 4 cut(s) | 44, 1611, 2808, 3182 |
| GlaI | GCGC | 3 cut(s) | 1080, 1277, 1590 |
| GluI | GCNGC | 9 cut(s) | 61, 276, 367, 1005, 1098, 1587, 1992, 2066, 2906 |
| GsaI | CCCAGC | 2 cut(s) | 762, 3336 |
| GsuI | CTGGAG | 1 cut(s) | 2664 |
| HaeIII | GGCC | 9 cut(s) | 128, 149, 572, 1406, 1974, 1981, 2325, 2379, 2818 |
| HapII | CCGG | 4 cut(s) | 35, 216, 303, 2785 |
| HhaI | GCGC | 3 cut(s) | 1081, 1278, 1591 |
| Hin6I | GCGC | 3 cut(s) | 1079, 1276, 1589 |
| HinP1I | GCGC | 3 cut(s) | 1079, 1276, 1589 |
| HincII | GTYRAC | 2 cut(s) | 2009, 2389 |
| HindII | GTYRAC | 2 cut(s) | 2009, 2389 |
| HindIII | AAGCTT | 5 cut(s) | 708, 2105, 3071, 3141, 3392 |
| HpaI | GTTAAC | 1 cut(s) | 2389 |
| HpaII | CCGG | 4 cut(s) | 35, 216, 303, 2785 |
| HphI | GGTGA | 7 cut(s) | 49, 1014, 1769, 2408, 2756, 3183, 3214 |
| Hpy166II | GTNNAC | 9 cut(s) | 32, 962, 2009, 2302, 2389, 2719, 3040, 3416, 3489 |
| Hpy8I | GTNNAC | 9 cut(s) | 32, 962, 2009, 2302, 2389, 2719, 3040, 3416, 3489 |
| Hpy99I | CGWCG | 5 cut(s) | 272, 275, 392, 395, 398 |
| HpyCH4IV | ACGT | 6 cut(s) | 485, 745, 1877, 2075, 2369, 3248 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 235, 244, 680, 929, 1434, 1655, 1829, 2914, 3413 |
| HpySE526I | ACGT | 6 cut(s) | 485, 745, 1877, 2075, 2369, 3248 |
| HspAI | GCGC | 3 cut(s) | 1079, 1276, 1589 |
| KpnI | GGTACC | 2 cut(s) | 1190, 2794 |
| Ksp22I | TGATCA | 2 cut(s) | 1918, 2833 |
| KspAI | GTTAAC | 1 cut(s) | 2389 |
| LguI | GCTCTTC | 1 cut(s) | 2277 |
| LmnI | GCTCC | 9 cut(s) | 68, 208, 243, 338, 407, 814, 920, 1596, 2038 |
| Lsp1109I | GCAGC | 6 cut(s) | 47, 1016, 1084, 1573, 1978, 2052 |
| LweI | GCATC | 8 cut(s) | 457, 718, 1225, 1597, 1736, 2852, 3301, 3337 |
| MabI | ACCWGGT | 1 cut(s) | 2011 |
| MaeI | CTAG | 4 cut(s) | 44, 1611, 2808, 3182 |
| MaeII | ACGT | 6 cut(s) | 485, 745, 1877, 2075, 2369, 3248 |
| MbiI | CCGCTC | 2 cut(s) | 203, 314 |
| MfeI | CAATTG | 2 cut(s) | 818, 1731 |
| MflI | RGATCY | 2 cut(s) | 1121, 3238 |
| MhlI | GDGCHC | 5 cut(s) | 925, 1385, 3218, 3378, 3418 |
| MlsI | TGGCCA | 3 cut(s) | 572, 1406, 1974 |
| MluNI | TGGCCA | 3 cut(s) | 572, 1406, 1974 |
| MlyI | GAGTC | 1 cut(s) | 542 |
| MmeI | TCCRAC | 3 cut(s) | 360, 2255, 3531 |
| Mox20I | TGGCCA | 3 cut(s) | 572, 1406, 1974 |
| Mph1103I | ATGCAT | 2 cut(s) | 1240, 2117 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1301, 3109, 3282 |
| MscI | TGGCCA | 3 cut(s) | 572, 1406, 1974 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1964, 3345 |
| Msp20I | TGGCCA | 3 cut(s) | 572, 1406, 1974 |
| MspA1I | CMGCKG | 2 cut(s) | 1604, 1649 |
| MspCI | CTTAAG | 1 cut(s) | 3074 |
| MspI | CCGG | 4 cut(s) | 35, 216, 303, 2785 |
| MspR9I | CCNGG | 6 cut(s) | 125, 1408, 1781, 1857, 2013, 3018 |
| MunI | CAATTG | 2 cut(s) | 818, 1731 |
| Mva1269I | GAATGC | 3 cut(s) | 2117, 2252, 2752 |
| MvaI | CCWGG | 6 cut(s) | 125, 1408, 1781, 1857, 2013, 3018 |
| MvnI | CGCG | 1 cut(s) | 366 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 235, 244, 680, 929, 1434, 1655, 1829, 2914, 3413 |
| NcoI | CCATGG | 1 cut(s) | 2466 |
| NlaIV | GGNNCC | 9 cut(s) | 239, 884, 1188, 1304, 1397, 2140, 2241, 2792, 3000 |
| NmeAIII | GCCGAG | 1 cut(s) | 1006 |
| NmuCI | GTSAC | 6 cut(s) | 1492, 1760, 1881, 2365, 2762, 3046 |
| NsiI | ATGCAT | 2 cut(s) | 1240, 2117 |
| PagI | TCATGA | 2 cut(s) | 1837, 1965 |
| PceI | AGGCCT | 2 cut(s) | 149, 1981 |
| PciSI | GCTCTTC | 1 cut(s) | 2277 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 393, 2865 |
| PctI | GAATGC | 3 cut(s) | 2117, 2252, 2752 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1301, 3109, 3282 |
| PfoI | TCCNGGA | 1 cut(s) | 3016 |
| PinAI | ACCGGT | 1 cut(s) | 34 |
| PkrI | GCNGC | 9 cut(s) | 62, 277, 368, 1006, 1099, 1588, 1993, 2067, 2907 |
| Ple19I | CGATCG | 1 cut(s) | 295 |
| PleI | GAGTC | 1 cut(s) | 541 |
| PpsI | GAGTC | 1 cut(s) | 541 |
| Ppu21I | YACGTR | 2 cut(s) | 746, 3249 |
| PpuMI | RGGWCCY | 3 cut(s) | 2138, 2239, 2989 |
| PshBI | ATTAAT | 1 cut(s) | 1220 |
| Psp5II | RGGWCCY | 3 cut(s) | 2138, 2239, 2989 |
| Psp6I | CCWGG | 6 cut(s) | 123, 1406, 1779, 1855, 2011, 3016 |
| PspEI | GGTNACC | 2 cut(s) | 1517, 2221 |
| PspFI | CCCAGC | 2 cut(s) | 758, 3332 |
| PspGI | CCWGG | 6 cut(s) | 123, 1406, 1779, 1855, 2011, 3016 |
| PspN4I | GGNNCC | 9 cut(s) | 239, 884, 1188, 1304, 1397, 2140, 2241, 2792, 3000 |
| PspPI | GGNCC | 9 cut(s) | 1652, 2138, 2239, 2302, 2324, 2377, 2504, 2989, 2998 |
| PspPPI | RGGWCCY | 3 cut(s) | 2138, 2239, 2989 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2825 |
| PsuI | RGATCY | 2 cut(s) | 1121, 3238 |
| PvuI | CGATCG | 1 cut(s) | 295 |
| PvuII | CAGCTG | 2 cut(s) | 1604, 1649 |
| RsaI | GTAC | 7 cut(s) | 476, 542, 1188, 1571, 1815, 2792, 2871 |
| RsaNI | GTAC | 7 cut(s) | 475, 541, 1187, 1570, 1814, 2791, 2870 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1964, 3345 |
| SapI | GCTCTTC | 1 cut(s) | 2277 |
| SatI | GCNGC | 9 cut(s) | 61, 276, 367, 1005, 1098, 1587, 1992, 2066, 2906 |
| Sau96I | GGNCC | 9 cut(s) | 1652, 2138, 2239, 2302, 2324, 2377, 2504, 2989, 2998 |
| ScaI | AGTACT | 1 cut(s) | 1571 |
| SchI | GAGTC | 1 cut(s) | 542 |
| ScrFI | CCNGG | 6 cut(s) | 125, 1408, 1781, 1857, 2013, 3018 |
| SduI | GDGCHC | 5 cut(s) | 925, 1385, 3218, 3378, 3418 |
| SexAI | ACCWGGT | 1 cut(s) | 2011 |
| SfaNI | GCATC | 8 cut(s) | 457, 718, 1225, 1597, 1736, 2852, 3301, 3337 |
| SgrAI | CRCCGGYG | 1 cut(s) | 34 |
| SinI | GGWCC | 7 cut(s) | 1652, 2138, 2239, 2302, 2504, 2989, 2998 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1964, 3345 |
| SmlI | CTYRAG | 2 cut(s) | 242, 3074 |
| SmoI | CTYRAG | 2 cut(s) | 242, 3074 |
| SseBI | AGGCCT | 2 cut(s) | 149, 1981 |
| SspI | AATATT | 2 cut(s) | 222, 1415 |
| SspMI | CTAG | 4 cut(s) | 44, 1611, 2808, 3182 |
| StuI | AGGCCT | 2 cut(s) | 149, 1981 |
| StyD4I | CCNGG | 6 cut(s) | 123, 1406, 1779, 1855, 2011, 3016 |
| StyI | CCWWGG | 6 cut(s) | 144, 2235, 2373, 2447, 2466, 3232 |
| TaiI | ACGT | 6 cut(s) | 488, 748, 1880, 2078, 2372, 3251 |
| TaqI | TCGA | 8 cut(s) | 105, 197, 342, 779, 1145, 1164, 1216, 1911 |
| TatI | WGTACW | 2 cut(s) | 540, 1569 |
| TauI | GCSGC | 3 cut(s) | 278, 369, 2908 |
| TscAI | CASTG | 8 cut(s) | 57, 323, 950, 1045, 1875, 2337, 2542, 3049 |
| TseFI | GTSAC | 6 cut(s) | 1492, 1760, 1881, 2365, 2762, 3046 |
| TseI | GCWGC | 6 cut(s) | 60, 1004, 1097, 1586, 1991, 2065 |
| Tsp45I | GTSAC | 6 cut(s) | 1492, 1760, 1881, 2365, 2762, 3046 |
| TspGWI | ACGGA | 3 cut(s) | 256, 2471, 2969 |
| TspRI | CASTG | 8 cut(s) | 57, 323, 950, 1045, 1875, 2337, 2542, 3049 |
| Vha464I | CTTAAG | 1 cut(s) | 3074 |
| VneI | GTGCAC | 1 cut(s) | 3414 |
| VpaK11BI | GGWCC | 7 cut(s) | 1652, 2138, 2239, 2302, 2504, 2989, 2998 |
| VspI | ATTAAT | 1 cut(s) | 1220 |
| XapI | RAATTY | 8 cut(s) | 1067, 1133, 1906, 2204, 2553, 3061, 3261, 3297 |
| XbaI | TCTAGA | 1 cut(s) | 3181 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 500, 3301 |
| XmiI | GTMKAC | 2 cut(s) | 961, 3488 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1301, 3109, 3282 |
| XspI | CTAG | 4 cut(s) | 44, 1611, 2808, 3182 |
| ZrmI | AGTACT | 1 cut(s) | 1571 |
| Zsp2I | ATGCAT | 2 cut(s) | 1240, 2117 |