Rh2CG112300

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011992
Physical Location & Seq
Forward (+)
9899380 .. 9905176
5797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG112300.1

Sequence Viewer

Length: 2703 bp
ATGGAAGCAGTTATATGGTTCCGCCAACACAATGCTTCGTACAGAAAGCTCAAAGGATCACCAGAAGCTATATTTCTTCACTGGGAGTGGATGAGCAGACAGTTCTTGGTGTTTGCCGAGTTGCTGGAGACAAGTTCAGCAGCCATTCAGAGCATTTCACATCTAACTGCAGGCACTGCAGATAGACCTTTGACCGAGTGGGAGTTTCAGCCAGCTCATTACTATCAGTTAGCTGCTCATTACTTGAAGGAGAAGAGATCTTCTTTGGACTTTGCAGTTTCTATGTCAGAAGGTGAGATTGATTATAGTGCTGAATCTGTGGCACCCTCATCCCATATGGGTCAGTTTGCTCGATTGATTGAACAAGGAGATGCATTTGTCATGCAGCCCCTTACTGATGAAGAGTATATGCGTTATGCAATTTCTGAAGGAAAAAGGTTCCAAGATTCCTTTGAAATTATTGCTTTACTCAAAAAATCTTGTGAATCTTACAATAATCTAAAAGTCAGGAGAATGGCTTCATTTTGTGGGTTCCAGATGGCCAGAGAATATTATGCTGCAGGTGATTTTAACAACGCCAAACTTCTTTTTGATGACTTTGCAAGTCTATACAGGCAAGAGGGATGGGTCACTTTGCTGTGGGAGGTATTAGGTTACTTGCGTGAAGGTTCAAGGAAACACAGCAAAGTTAAAGAATTTATAGAGTACTCCTTTGAGATGGCTGCACTCCCTATATCAGCTGATACTGGGATCCAGTCTTTTAGATTTGAAGAATCTGGTCCAGCTGGGCCTGCTACCCTCCAACAAAGAGAAACAATACATAAAGAAGTTTTTGGGCTTGTTAGTGAAAAACTGGGGTTGGCATCTACTGAAAACTGTGATGATGTCAAAGTAAGCAGCACCAATCCACTTCACCTTGAAATTGATCTCGTCAGTCCCCTTAGATTGGTACTCCTTGCTTCAGTTGCTTTTCATGAACAAATAATCAAGCCTGGCTCATCCACATTGGTTACACTGTCACTCTTATCACAGTTACCACTTAATTTTGAGATTGATCAATTAGAAGTCCAGTTCAATCAGTCTCATTGTAACTTTGTGATCATGGATGCCCAAAAGCCTCATGTAGCTTCCTCAACTGATGGTCAATCAGGTCACCGAAGAGAGACTGCTCCATCTTTGCGACTTTCTACAAACAAATGGCTCCGGTTAACGTATGACATCAAATCGGATCAAAGTGGAAAGCTTGAATGCATATCTATTATTGCCAAAATGGGACCGCACTTTACTATCTGTTGTAGAGCTGAAAGTCCTGCTTCAATGGATGATTTGCCTCTTTGGAAATTTGAAGACCGTGTGGTTACCTATCCAACCAAGGACCCAGCTCTGGCATTCTTCGGTCAGAGAGCAATTCAAGTTGAAGAACCAGACCCGGAAGTGGATCTTACTTTAGGTGCTTCTGGCCCTGCATTAATTGGAGAGAGCTTCATAGTACCTGTTACTGTCACATCCAAGGGACGTGAGGTTAATTCGGGTGAGTTGAAGATCAATCTGGTGGATGTAAGGGGAGGTGGTTTGTTTAGTCCAAGGGATGCAGAACTATCTGCGGATAGTCATCATGTTGAACTTCTTGGTATATCTGGATCAGAAGGAGAAGATGAATCCCAATTGGATACCGATGAAATTAAGAAAATTCAAAAGTCTTTTGGATTGGTTTCAGTTCCTAATCTCAAAAGTGGAGACTCATGGTCATGCAAATTGGAAATCAAGTGGTATAGACCCAAACCAGTTATGCTGTATGTATCACTGGGTTATTCTCCAGATAATAATGGATCAAACACACAAAAAGTTAATGTGCACAAGAGCTTGCAGATTGAAGGAAAGAATGCAATCTCAATTAGCCATCGCCTTATGCTTCCTTTCCGCAGGTACCCGTTGTTGCTTTCTAGGACAAAATCAGTTCCTGATTCTGATCAGTCAGTGTCGATTCCTTTAAACGAAACAAGTGTACTCATTGTTAGTGCTACGAATTGCTCAGAGGTGCCACTTCAGTTACTATCATTATCTATTGAAAGAGATAATGATGACACTGAAAGGTCATGTTCTTTGCATGGTGGTGAGGACCTTTTAAACCCTGCCCTTCTTGTTCCAGGAGAGAAGTTTAAGAAGGTGTACACTGTCACTTCTGAGATGAATTCTTCAAAGCTTATATTAGGTAATGTGTGTCTTAGATGGAGAAGGAATTCTGGGACTAGAGAACAAGCTGGTTCTGCGGCTCCAGTTATGACTAACCACAAACTTCCTGATGTGAATCTGGAATCATCACCTCTTGTCGTGAGTTTGGAGTGTCCTCCTTACGCAATCCTTGGCGATCCTTTCACATATTTTGTTAAAATTCAGAACCAAACAGAACTGCTTCAAGAGGCCAAAATTTTCCTGGCAGATGCTCAAAGTTTTGTAATATCTGGGTCTCACAGTGACACGGTATATATTCTTCCAAAATCTGAGCACATCATCAGTTACAAGCTTGTCCCGCTTTCCTCAGGGGAACAACAGCTACCCAGATTCACTTTAACCGCAGTTAGATATTCCACTGGGTTTCAGCCTTCAATTGCTGCATCTACTATTTTTGTTTTCCCCTCTCAGCCTCATTTTAAGATGGTTGCTGTGGGAGATGACAGGAAGGAATCAGTGGTGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

900

Amino Acids

100.32

Weight (kDa)

5.52

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Foie-gras_1 PF11817 2 - 242 6e-55 Foie gras liver health family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65950
fragaria_vesca FvH4_1g10000
malus_domestica MD15G1228100.v1.1
prunus_persica Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1
pyrus_communis pycom15g20290
rosa_chinensis RchiOBHm_Chr2g0096791
rosa_laevigata RLG00000016670 RLG00000023097
rosa_multiflora Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031
rosa_roxburghii Rroxscaffold_2G00145310
rosa_rugosa Rorug02G0060900
rosa_samantha Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700
rosa_wichuraiana Rw2G008370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
Acc36I ACCTGC 2 cut(s) 551, 1914
Acc65I GGTACC 1 cut(s) 1926
AccB1I GGYRCC 3 cut(s) 322, 1926, 2038
AciI CCGC 7 cut(s) 22, 1277, 1604, 1921, 2270, 2531, 2574
AclWI GGATC 8 cut(s) 64, 745, 758, 1236, 1446, 1648, 1837, 2363
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 7 cut(s) 695, 1340, 1689, 2191, 2239, 2391, 2427
AcuI CTGAAG 3 cut(s) 447, 945, 2030
AfaI GTAC 7 cut(s) 41, 707, 951, 1491, 1928, 2007, 2171
AfiI CCNNNNNNNGG 3 cut(s) 946, 1384, 1435
AhdI GACNNNNNGTC 1 cut(s) 1744
AjiI CACGTC 1 cut(s) 1517
AjnI CCWGG 3 cut(s) 991, 2146, 2433
Alw21I GWGCWC 2 cut(s) 1857, 2508
Alw26I GTCTC 5 cut(s) 122, 1086, 1157, 1731, 2472
Alw44I GTGCAC 1 cut(s) 1853
AlwI GGATC 8 cut(s) 64, 745, 758, 1236, 1446, 1648, 1837, 2363
AlwNI CAGNNNCTG 2 cut(s) 176, 1961
AoxI GGCC 4 cut(s) 540, 788, 1459, 2421
ApaLI GTGCAC 1 cut(s) 1853
ApeKI GCWGC 7 cut(s) 140, 233, 385, 557, 722, 897, 2612
ApoI RAATTY 7 cut(s) 695, 1340, 1689, 2191, 2239, 2391, 2427
AseI ATTAAT 1 cut(s) 1469
Asp700I GAANNNNTTC 3 cut(s) 517, 2239, 2412
Asp718I GGTACC 1 cut(s) 1926
AspS9I GGNCC 6 cut(s) 779, 788, 1274, 1375, 1460, 2119
AsuC2I CCSGG 1 cut(s) 1430
AsuHPI GGTGA 8 cut(s) 51, 305, 575, 905, 1145, 1544, 2126, 2313
AvaII GGWCC 4 cut(s) 779, 1274, 1375, 2119
AxyI CCTNAGG 1 cut(s) 2539
BaeGI GKGCMC 1 cut(s) 1857
BalI TGGCCA 1 cut(s) 542
BamHI GGATCC 1 cut(s) 750
BanI GGYRCC 3 cut(s) 322, 1926, 2038
BarI GAAGNNNNNNTAC 2 cut(s) 2475, 2507
BbsI GAAGAC 1 cut(s) 1353
Bbv12I GWGCWC 2 cut(s) 1857, 2508
BbvI GCAGC 7 cut(s) 152, 220, 397, 544, 709, 909, 2599
BccI CCATC 8 cut(s) 532, 618, 712, 1133, 1180, 1908, 2223, 2650
BciT130I CCWGG 3 cut(s) 993, 2148, 2435
BciVI GTATCC 1 cut(s) 1663
BclI TGATCA 3 cut(s) 1054, 1098, 1969
BcnI CCSGG 1 cut(s) 1430
BcoDI GTCTC 5 cut(s) 122, 1086, 1157, 1731, 2472
BfaI CTAG 2 cut(s) 1944, 2250
BfmI CTRYAG 3 cut(s) 168, 177, 558
BfuAI ACCTGC 2 cut(s) 551, 1914
BfuI GTATCC 1 cut(s) 1663
BglII AGATCT 1 cut(s) 257
BisI GCNGC 8 cut(s) 141, 234, 386, 558, 723, 898, 2271, 2613
BlsI GCNGC 8 cut(s) 142, 235, 387, 559, 724, 899, 2272, 2614
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 4 cut(s) 993, 1430, 2148, 2435
Bme18I GGWCC 4 cut(s) 779, 1274, 1375, 2119
BmeRI GACNNNNNGTC 1 cut(s) 1744
BmgBI CACGTC 1 cut(s) 1517
BmgT120I GGNCC 6 cut(s) 779, 788, 1274, 1375, 1460, 2119
BmrFI CCNGG 4 cut(s) 993, 1430, 2148, 2435
BmrI ACTGGG 5 cut(s) 91, 756, 863, 1814, 2601
BmsI GCATC 6 cut(s) 361, 872, 1096, 1579, 2431, 2624
BmuI ACTGGG 5 cut(s) 91, 756, 863, 1814, 2601
BpiI GAAGAC 1 cut(s) 1353
BpmI CTGGAG 3 cut(s) 146, 1800, 2259
BpuMI CCSGG 1 cut(s) 1430
BsaBI GATNNNNATC 3 cut(s) 1611, 1968, 2307
BsaI GGTCTC 1 cut(s) 2472
BsaJI CCNNGG 4 cut(s) 1371, 1509, 1583, 2362
BsaWI WCCGGW 1 cut(s) 1203
Bsc4I CCNNNNNNNGG 3 cut(s) 946, 1384, 1435
Bse1I ACTGG 9 cut(s) 86, 751, 754, 858, 1069, 1784, 1809, 2276, 2596
Bse21I CCTNAGG 1 cut(s) 2539
Bse8I GATNNNNATC 3 cut(s) 1611, 1968, 2307
BseBI CCWGG 3 cut(s) 993, 2148, 2435
BseDI CCNNGG 4 cut(s) 1371, 1509, 1583, 2362
BseGI GGATG 9 cut(s) 96, 329, 629, 998, 1111, 1327, 1505, 1561, 1594
BseJI GATNNNNATC 3 cut(s) 1611, 1968, 2307
BseLI CCNNNNNNNGG 3 cut(s) 946, 1384, 1435
BseMII CTCAG 5 cut(s) 2046, 2175, 2493, 2553, 2654
BseNI ACTGG 9 cut(s) 86, 751, 754, 858, 1069, 1784, 1809, 2276, 2596
BseSI GKGCMC 1 cut(s) 1857
BseXI GCAGC 7 cut(s) 152, 220, 397, 544, 709, 909, 2599
BseYI CCCAGC 2 cut(s) 785, 1378
BsgI GTGCAG 1 cut(s) 708
BshFI GGCC 4 cut(s) 542, 790, 1461, 2423
BshNI GGYRCC 3 cut(s) 322, 1926, 2038
BsiHKAI GWGCWC 2 cut(s) 1857, 2508
BsiSI CCGG 2 cut(s) 1204, 1430
BslFI GGGAC 5 cut(s) 921, 1287, 1527, 2260, 2513
BslI CCNNNNNNNGG 3 cut(s) 946, 1384, 1435
BsmAI GTCTC 5 cut(s) 122, 1086, 1157, 1731, 2472
BsmFI GGGAC 5 cut(s) 921, 1287, 1527, 2260, 2513
BsmI GAATGC 3 cut(s) 1253, 1388, 1888
BsnI GGCC 4 cut(s) 542, 790, 1461, 2423
Bso31I GGTCTC 1 cut(s) 2472
Bsp1286I GDGCHC 2 cut(s) 1857, 2508
Bsp1407I TGTACA 1 cut(s) 2169
BspACI CCGC 7 cut(s) 22, 1277, 1604, 1921, 2270, 2531, 2574
BspANI GGCC 4 cut(s) 542, 790, 1461, 2423
BspCNI CTCAG 5 cut(s) 2045, 2176, 2494, 2552, 2653
BspHI TCATGA 1 cut(s) 973
BspMAI CTGCAG 3 cut(s) 172, 181, 562
BspMI ACCTGC 2 cut(s) 551, 1914
BspPI GGATC 8 cut(s) 64, 745, 758, 1236, 1446, 1648, 1837, 2363
BspT107I GGYRCC 3 cut(s) 322, 1926, 2038
BspTNI GGTCTC 1 cut(s) 2472
BsrGI TGTACA 1 cut(s) 2169
BsrI ACTGG 9 cut(s) 86, 751, 754, 858, 1069, 1784, 1809, 2276, 2596
BssECI CCNNGG 4 cut(s) 1371, 1509, 1583, 2362
BssT1I CCWWGG 4 cut(s) 1371, 1509, 1583, 2362
Bst2UI CCWGG 3 cut(s) 993, 2148, 2435
Bst4CI ACNGT 9 cut(s) 102, 878, 1017, 1032, 1352, 1501, 2176, 2474, 2482
Bst6I CTCTTC 3 cut(s) 248, 396, 1153
BstAPI GCANNNNNTGC 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 2169
BstC8I GCNNGC 4 cut(s) 172, 213, 792, 1865
BstDEI CTNAG 7 cut(s) 941, 2032, 2184, 2225, 2502, 2539, 2640
BstEII GGTNACC 2 cut(s) 1151, 1357
BstF5I GGATG 9 cut(s) 96, 329, 629, 998, 1111, 1327, 1505, 1561, 1594
BstMAI GTCTC 5 cut(s) 122, 1086, 1157, 1731, 2472
BstMWI GCNNNNNNNGC 5 cut(s) 176, 791, 965, 2267, 2530
BstNI CCWGG 3 cut(s) 993, 2148, 2435
BstPI GGTNACC 2 cut(s) 1151, 1357
BstSCI CCNGG 4 cut(s) 991, 1428, 2146, 2433
BstSFI CTRYAG 3 cut(s) 168, 177, 558
BstSLI GKGCMC 1 cut(s) 1857
BstV1I GCAGC 7 cut(s) 152, 220, 397, 544, 709, 909, 2599
BstV2I GAAGAC 1 cut(s) 1353
BstX2I RGATCY 3 cut(s) 257, 750, 1438
BstYI RGATCY 3 cut(s) 257, 750, 1438
Bsu36I CCTNAGG 1 cut(s) 2539
BsuI GTATCC 1 cut(s) 1663
BsuRI GGCC 4 cut(s) 542, 790, 1461, 2423
BtgZI GCGATG 1 cut(s) 1886
BtrI CACGTC 1 cut(s) 1517
BtsCI GGATG 9 cut(s) 96, 329, 629, 998, 1111, 1327, 1505, 1561, 1594
BtsI GCAGTG 1 cut(s) 174
BveI ACCTGC 2 cut(s) 551, 1914
Cac8I GCNNGC 4 cut(s) 172, 213, 792, 1865
CaiI CAGNNNCTG 2 cut(s) 176, 1961
CciI TCATGA 1 cut(s) 973
Cfr13I GGNCC 6 cut(s) 779, 788, 1274, 1375, 1460, 2119
Csp6I GTAC 7 cut(s) 40, 706, 950, 1490, 1927, 2006, 2170
CviAII CATG 9 cut(s) 382, 974, 1102, 1121, 1616, 1743, 1749, 2097, 2108
CviQI GTAC 7 cut(s) 40, 706, 950, 1490, 1927, 2006, 2170
DdeI CTNAG 7 cut(s) 941, 2032, 2184, 2225, 2502, 2539, 2640
DraI TTTAAA 2 cut(s) 1992, 2127
DriI GACNNNNNGTC 1 cut(s) 1744
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 3 cut(s) 248, 396, 1153
Eam1105I GACNNNNNGTC 1 cut(s) 1744
EarI CTCTTC 3 cut(s) 248, 396, 1153
EciI GGCGGA 1 cut(s) 11
Eco130I CCWWGG 4 cut(s) 1371, 1509, 1583, 2362
Eco31I GGTCTC 1 cut(s) 2472
Eco47I GGWCC 4 cut(s) 779, 1274, 1375, 2119
Eco57I CTGAAG 3 cut(s) 447, 945, 2030
Eco81I CCTNAGG 1 cut(s) 2539
Eco91I GGTNACC 2 cut(s) 1151, 1357
EcoO109I RGGNCCY 2 cut(s) 1375, 2119
EcoO65I GGTNACC 2 cut(s) 1151, 1357
EcoRI GAATTC 2 cut(s) 2191, 2239
EcoRII CCWGG 3 cut(s) 991, 2146, 2433
EcoT14I CCWWGG 4 cut(s) 1371, 1509, 1583, 2362
EcoT22I ATGCAT 2 cut(s) 376, 1253
ErhI CCWWGG 4 cut(s) 1371, 1509, 1583, 2362
FaeI CATG 9 cut(s) 385, 977, 1105, 1124, 1619, 1746, 1752, 2100, 2111
FalI AAGNNNNNCTT 4 cut(s) 1297, 1329, 1425, 1457
FaqI GGGAC 5 cut(s) 921, 1287, 1527, 2260, 2513
FatI CATG 9 cut(s) 381, 973, 1101, 1120, 1615, 1742, 1748, 2096, 2107
FauI CCCGC 1 cut(s) 2538
FauNDI CATATG 1 cut(s) 336
FbaI TGATCA 3 cut(s) 1054, 1098, 1969
Fnu4HI GCNGC 8 cut(s) 141, 234, 386, 558, 723, 898, 2271, 2613
FokI GGATG 9 cut(s) 103, 316, 636, 985, 1118, 1334, 1492, 1568, 1601
Fsp4HI GCNGC 8 cut(s) 141, 234, 386, 558, 723, 898, 2271, 2613
FspBI CTAG 2 cut(s) 1944, 2250
GluI GCNGC 8 cut(s) 141, 234, 386, 558, 723, 898, 2271, 2613
GsaI CCCAGC 2 cut(s) 789, 1382
GsuI CTGGAG 3 cut(s) 146, 1800, 2259
HaeIII GGCC 4 cut(s) 542, 790, 1461, 2423
HapII CCGG 2 cut(s) 1204, 1430
Hin1II CATG 9 cut(s) 385, 977, 1105, 1124, 1619, 1746, 1752, 2100, 2111
HincII GTYRAC 1 cut(s) 1209
HindII GTYRAC 1 cut(s) 1209
HindIII AAGCTT 3 cut(s) 1241, 2201, 2522
HpaI GTTAAC 1 cut(s) 1209
HpaII CCGG 2 cut(s) 1204, 1430
HphI GGTGA 8 cut(s) 51, 305, 575, 905, 1145, 1544, 2126, 2313
Hpy166II GTNNAC 5 cut(s) 1209, 1855, 2006, 2170, 2172
Hpy8I GTNNAC 5 cut(s) 1209, 1855, 2006, 2170, 2172
HpyCH4III ACNGT 9 cut(s) 102, 878, 1017, 1032, 1352, 1501, 2176, 2474, 2482
HpyCH4IV ACGT 2 cut(s) 1211, 1516
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 791, 965, 2267, 2530
HpyF3I CTNAG 7 cut(s) 941, 2032, 2184, 2225, 2502, 2539, 2640
HpySE526I ACGT 2 cut(s) 1211, 1516
Hsp92II CATG 9 cut(s) 385, 977, 1105, 1124, 1619, 1746, 1752, 2100, 2111
KpnI GGTACC 1 cut(s) 1930
Ksp22I TGATCA 3 cut(s) 1054, 1098, 1969
KspAI GTTAAC 1 cut(s) 1209
LmnI GCTCC 3 cut(s) 1174, 1206, 2278
Lsp1109I GCAGC 7 cut(s) 152, 220, 397, 544, 709, 909, 2599
LweI GCATC 6 cut(s) 361, 872, 1096, 1579, 2431, 2624
MaeI CTAG 2 cut(s) 1944, 2250
MaeII ACGT 2 cut(s) 1211, 1516
MfeI CAATTG 2 cut(s) 1664, 2607
MflI RGATCY 3 cut(s) 257, 750, 1438
MhlI GDGCHC 2 cut(s) 1857, 2508
MlsI TGGCCA 1 cut(s) 542
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 1 cut(s) 1733
MmeI TCCRAC 2 cut(s) 826, 1391
Mox20I TGGCCA 1 cut(s) 542
Mph1103I ATGCAT 2 cut(s) 376, 1253
MroXI GAANNNNTTC 3 cut(s) 517, 2239, 2412
MscI TGGCCA 1 cut(s) 542
MslI CAYNNNNRTG 2 cut(s) 1747, 2112
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 2 cut(s) 740, 785
MspI CCGG 2 cut(s) 1204, 1430
MspR9I CCNGG 4 cut(s) 993, 1430, 2148, 2435
MunI CAATTG 2 cut(s) 1664, 2607
Mva1269I GAATGC 3 cut(s) 1253, 1388, 1888
MvaI CCWGG 3 cut(s) 993, 2148, 2435
MwoI GCNNNNNNNGC 5 cut(s) 176, 791, 965, 2267, 2530
NciI CCSGG 1 cut(s) 1430
NdeI CATATG 1 cut(s) 336
NlaIII CATG 9 cut(s) 385, 977, 1105, 1124, 1619, 1746, 1752, 2100, 2111
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 6 cut(s) 628, 1017, 1151, 1501, 2176, 2474
NsiI ATGCAT 2 cut(s) 376, 1253
PagI TCATGA 1 cut(s) 973
PaqCI CACCTGC 1 cut(s) 551
PctI GAATGC 3 cut(s) 1253, 1388, 1888
PdmI GAANNNNTTC 3 cut(s) 517, 2239, 2412
PfoI TCCNGGA 1 cut(s) 2146
PkrI GCNGC 8 cut(s) 142, 235, 387, 559, 724, 899, 2272, 2614
PleI GAGTC 1 cut(s) 1733
PpsI GAGTC 1 cut(s) 1733
PpuMI RGGWCCY 2 cut(s) 1375, 2119
PshBI ATTAAT 1 cut(s) 1469
Psp5II RGGWCCY 2 cut(s) 1375, 2119
Psp6I CCWGG 3 cut(s) 991, 2146, 2433
PspEI GGTNACC 2 cut(s) 1151, 1357
PspFI CCCAGC 2 cut(s) 785, 1378
PspGI CCWGG 3 cut(s) 991, 2146, 2433
PspPI GGNCC 6 cut(s) 779, 788, 1274, 1375, 1460, 2119
PspPPI RGGWCCY 2 cut(s) 1375, 2119
PsrI GAACNNNNNNTAC 2 cut(s) 2538, 2570
PstI CTGCAG 3 cut(s) 172, 181, 562
PstNI CAGNNNCTG 2 cut(s) 176, 1961
PsuI RGATCY 3 cut(s) 257, 750, 1438
PvuII CAGCTG 2 cut(s) 740, 785
RsaI GTAC 7 cut(s) 41, 707, 951, 1491, 1928, 2007, 2171
RsaNI GTAC 7 cut(s) 40, 706, 950, 1490, 1927, 2006, 2170
RseI CAYNNNNRTG 2 cut(s) 1747, 2112
SatI GCNGC 8 cut(s) 141, 234, 386, 558, 723, 898, 2271, 2613
Sau96I GGNCC 6 cut(s) 779, 788, 1274, 1375, 1460, 2119
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 1 cut(s) 1733
ScrFI CCNGG 4 cut(s) 993, 1430, 2148, 2435
SduI GDGCHC 2 cut(s) 1857, 2508
SfaNI GCATC 6 cut(s) 361, 872, 1096, 1579, 2431, 2624
SfcI CTRYAG 3 cut(s) 168, 177, 558
SinI GGWCC 4 cut(s) 779, 1274, 1375, 2119
SmiMI CAYNNNNRTG 2 cut(s) 1747, 2112
SsiI CCGC 7 cut(s) 22, 1277, 1604, 1921, 2270, 2531, 2574
SspI AATATT 1 cut(s) 551
SspMI CTAG 2 cut(s) 1944, 2250
StyD4I CCNGG 4 cut(s) 991, 1428, 2146, 2433
StyI CCWWGG 4 cut(s) 1371, 1509, 1583, 2362
TaaI ACNGT 9 cut(s) 102, 878, 1017, 1032, 1352, 1501, 2176, 2474, 2482
TaiI ACGT 2 cut(s) 1214, 1519
TaqI TCGA 2 cut(s) 352, 1982
TaqII GACCGA 2 cut(s) 209, 1385
TatI WGTACW 3 cut(s) 705, 2005, 2169
TauI GCSGC 1 cut(s) 2273
TseFI GTSAC 6 cut(s) 628, 1017, 1151, 1501, 2176, 2474
TseI GCWGC 7 cut(s) 140, 233, 385, 557, 722, 897, 2612
Tsp45I GTSAC 6 cut(s) 628, 1017, 1151, 1501, 2176, 2474
TspDTI ATGAA 8 cut(s) 414, 510, 962, 990, 1474, 1671, 1692, 2204
VneI GTGCAC 1 cut(s) 1853
VpaK11BI GGWCC 4 cut(s) 779, 1274, 1375, 2119
VspI ATTAAT 1 cut(s) 1469
XapI RAATTY 7 cut(s) 695, 1340, 1689, 2191, 2239, 2391, 2427
XcmI CCANNNNNNNNNTGG 1 cut(s) 2431
XmnI GAANNNNTTC 3 cut(s) 517, 2239, 2412
XspI CTAG 2 cut(s) 1944, 2250
ZrmI AGTACT 1 cut(s) 707
Zsp2I ATGCAT 2 cut(s) 376, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.