trafficking protein particle complex
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65950 |
| fragaria_vesca | FvH4_1g10000 |
| malus_domestica | MD15G1228100.v1.1 |
| prunus_persica | Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1 |
| pyrus_communis | pycom15g20290 |
| rosa_chinensis | RchiOBHm_Chr2g0096791 |
| rosa_laevigata | RLG00000016670 RLG00000023097 |
| rosa_multiflora | Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00145310 |
| rosa_rugosa | Rorug02G0060900 |
| rosa_samantha | Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700 |
| rosa_wichuraiana | Rw2G008370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1195 |
| AccB1I | GGYRCC | 2 cut(s) | 1195, 2960 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 553 |
| AccI | GTMKAC | 2 cut(s) | 405, 970 |
| AccII | CGCG | 4 cut(s) | 372, 462, 464, 2229 |
| AccIII | TCCGGA | 1 cut(s) | 2793 |
| AclWI | GGATC | 6 cut(s) | 306, 444, 2322, 2478, 3232, 3242 |
| AcoI | YGGCCR | 2 cut(s) | 576, 2017 |
| AcsI | RAATTY | 6 cut(s) | 840, 1142, 2216, 2565, 3070, 3306 |
| AcuI | CTGAAG | 6 cut(s) | 1064, 1320, 1821, 2903, 3138, 3278 |
| AfaI | GTAC | 7 cut(s) | 977, 1197, 1280, 1580, 1827, 2367, 2880 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2620 |
| AhlI | ACTAGT | 1 cut(s) | 2881 |
| AjiI | CACGTC | 1 cut(s) | 2008 |
| AjnI | CCWGG | 4 cut(s) | 42, 1867, 2827, 3025 |
| Alw21I | GWGCWC | 4 cut(s) | 72, 619, 934, 3387 |
| Alw26I | GTCTC | 7 cut(s) | 546, 588, 995, 1543, 2033, 2607, 3351 |
| AlwI | GGATC | 6 cut(s) | 306, 444, 2322, 2478, 3232, 3242 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2834 |
| Aor13HI | TCCGGA | 1 cut(s) | 2793 |
| AoxI | GGCC | 9 cut(s) | 147, 352, 576, 1658, 1991, 2017, 2335, 2389, 3300 |
| ApeKI | GCWGC | 5 cut(s) | 516, 1106, 1595, 2077, 3491 |
| ApoI | RAATTY | 6 cut(s) | 840, 1142, 2216, 2565, 3070, 3306 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3118, 3291 |
| Asp718I | GGTACC | 1 cut(s) | 1195 |
| AspLEI | GCGC | 4 cut(s) | 462, 464, 1600, 3425 |
| AspS9I | GGNCC | 9 cut(s) | 1649, 1658, 2150, 2251, 2336, 2389, 2516, 2831, 2998 |
| AsuC2I | CCSGG | 3 cut(s) | 65, 2025, 3124 |
| AsuHPI | GGTGA | 8 cut(s) | 49, 1023, 1178, 1448, 1781, 1787, 2227, 2420 |
| AvaII | GGWCC | 6 cut(s) | 1649, 2150, 2251, 2516, 2831, 2998 |
| AxyI | CCTNAGG | 1 cut(s) | 3418 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1187, 1220, 1236, 1269 |
| BalI | TGGCCA | 1 cut(s) | 2019 |
| BanI | GGYRCC | 2 cut(s) | 1195, 2960 |
| BanII | GRGCYC | 3 cut(s) | 72, 619, 1394 |
| BauI | CACGAG | 1 cut(s) | 2617 |
| BbsI | GAAGAC | 2 cut(s) | 12, 627 |
| Bbv12I | GWGCWC | 4 cut(s) | 72, 619, 934, 3387 |
| BbvI | GCAGC | 5 cut(s) | 528, 1093, 1582, 2064, 3478 |
| BceAI | ACGGC | 2 cut(s) | 367, 3165 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1163, 1197 |
| BciT130I | CCWGG | 4 cut(s) | 44, 1869, 2829, 3027 |
| BciVI | GTATCC | 2 cut(s) | 1634, 2811 |
| BclI | TGATCA | 2 cut(s) | 1930, 2104 |
| BcnI | CCSGG | 3 cut(s) | 65, 2025, 3124 |
| BcoDI | GTCTC | 7 cut(s) | 546, 588, 995, 1543, 2033, 2607, 3351 |
| BcuI | ACTAGT | 1 cut(s) | 2881 |
| BfaI | CTAG | 7 cut(s) | 1416, 1433, 1832, 2817, 2882, 3020, 3191 |
| BfmI | CTRYAG | 1 cut(s) | 3129 |
| BfuI | GTATCC | 2 cut(s) | 1634, 2811 |
| BglII | AGATCT | 1 cut(s) | 1130 |
| BisI | GCNGC | 9 cut(s) | 282, 373, 514, 517, 1107, 1596, 2078, 2915, 3492 |
| BlsI | GCNGC | 9 cut(s) | 283, 374, 515, 518, 1108, 1597, 2079, 2916, 3493 |
| BmcAI | AGTACT | 2 cut(s) | 977, 1580 |
| Bme1390I | CCNGG | 7 cut(s) | 44, 65, 1869, 2025, 2829, 3027, 3124 |
| Bme18I | GGWCC | 6 cut(s) | 1649, 2150, 2251, 2516, 2831, 2998 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2620 |
| BmgBI | CACGTC | 1 cut(s) | 2008 |
| BmgT120I | GGNCC | 9 cut(s) | 1649, 1658, 2150, 2251, 2336, 2389, 2516, 2831, 2998 |
| BmiI | GGNNCC | 8 cut(s) | 245, 329, 893, 1197, 1313, 2152, 2253, 2962 |
| BmrFI | CCNGG | 7 cut(s) | 44, 65, 1869, 2025, 2829, 3027, 3124 |
| BmrI | ACTGGG | 2 cut(s) | 563, 964 |
| BmsI | GCATC | 9 cut(s) | 50, 463, 724, 779, 1742, 2861, 3310, 3369, 3503 |
| BmuI | ACTGGG | 2 cut(s) | 563, 964 |
| BpiI | GAAGAC | 2 cut(s) | 12, 627 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 228, 260 |
| BpmI | CTGGAG | 2 cut(s) | 2370, 2676 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3083 |
| BpuEI | CTTGAG | 1 cut(s) | 233 |
| BpuMI | CCSGG | 3 cut(s) | 65, 2025, 3124 |
| Bsa29I | ATCGAT | 3 cut(s) | 1173, 1756, 1760 |
| BsaAI | YACGTR | 1 cut(s) | 3258 |
| BsaBI | GATNNNNATC | 4 cut(s) | 738, 1732, 2487, 3186 |
| BsaI | GGTCTC | 1 cut(s) | 3351 |
| BsaJI | CCNNGG | 6 cut(s) | 144, 370, 2247, 2385, 2459, 3241 |
| BsaWI | WCCGGW | 2 cut(s) | 2518, 2793 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 89, 119, 172, 202 |
| Bse118I | RCCGGY | 3 cut(s) | 34, 1084, 2333 |
| Bse1I | ACTGG | 7 cut(s) | 313, 558, 959, 1624, 1627, 1945, 2353 |
| Bse21I | CCTNAGG | 1 cut(s) | 3418 |
| Bse3DI | GCAATG | 2 cut(s) | 1453, 1470 |
| Bse8I | GATNNNNATC | 4 cut(s) | 738, 1732, 2487, 3186 |
| BseAI | TCCGGA | 1 cut(s) | 2793 |
| BseBI | CCWGG | 4 cut(s) | 44, 1869, 2829, 3027 |
| BseCI | ATCGAT | 3 cut(s) | 1173, 1756, 1760 |
| BseDI | CCNNGG | 6 cut(s) | 144, 370, 2247, 2385, 2459, 3241 |
| BseJI | GATNNNNATC | 4 cut(s) | 738, 1732, 2487, 3186 |
| BseMI | GCAATG | 2 cut(s) | 1453, 1470 |
| BseNI | ACTGG | 7 cut(s) | 313, 558, 959, 1624, 1627, 1945, 2353 |
| BsePI | GCGCGC | 1 cut(s) | 460 |
| BseRI | GAGGAG | 4 cut(s) | 236, 278, 356, 2541 |
| BseXI | GCAGC | 5 cut(s) | 528, 1093, 1582, 2064, 3478 |
| BseYI | CCCAGC | 4 cut(s) | 416, 764, 1655, 3341 |
| BsgI | GTGCAG | 1 cut(s) | 2325 |
| Bsh1236I | CGCG | 4 cut(s) | 372, 462, 464, 2229 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1760 |
| BshFI | GGCC | 9 cut(s) | 149, 354, 578, 1660, 1993, 2019, 2337, 2391, 3302 |
| BshNI | GGYRCC | 2 cut(s) | 1195, 2960 |
| BshVI | ATCGAT | 3 cut(s) | 1173, 1756, 1760 |
| BsiEI | CGRYCG | 1 cut(s) | 1760 |
| BsiHKAI | GWGCWC | 4 cut(s) | 72, 619, 934, 3387 |
| BslFI | GGGAC | 3 cut(s) | 1797, 2477, 3139 |
| BsmAI | GTCTC | 7 cut(s) | 546, 588, 995, 1543, 2033, 2607, 3351 |
| BsmBI | CGTCTC | 3 cut(s) | 588, 995, 1543 |
| BsmFI | GGGAC | 3 cut(s) | 1797, 2477, 3139 |
| BsmI | GAATGC | 3 cut(s) | 2129, 2264, 2761 |
| BsnI | GGCC | 9 cut(s) | 149, 354, 578, 1660, 1993, 2019, 2337, 2391, 3302 |
| Bso31I | GGTCTC | 1 cut(s) | 3351 |
| Bsp1286I | GDGCHC | 5 cut(s) | 72, 619, 934, 1394, 3387 |
| Bsp13I | TCCGGA | 1 cut(s) | 2793 |
| BspANI | GGCC | 9 cut(s) | 149, 354, 578, 1660, 1993, 2019, 2337, 2391, 3302 |
| BspDI | ATCGAT | 3 cut(s) | 1173, 1756, 1760 |
| BspEI | TCCGGA | 1 cut(s) | 2793 |
| BspFNI | CGCG | 4 cut(s) | 372, 462, 464, 2229 |
| BspHI | TCATGA | 2 cut(s) | 1849, 1977 |
| BspLI | GGNNCC | 8 cut(s) | 245, 329, 893, 1197, 1313, 2152, 2253, 2962 |
| BspMAI | CTGCAG | 1 cut(s) | 3133 |
| BspPI | GGATC | 6 cut(s) | 306, 444, 2322, 2478, 3232, 3242 |
| BspT107I | GGYRCC | 2 cut(s) | 1195, 2960 |
| BspTNI | GGTCTC | 1 cut(s) | 3351 |
| BsrDI | GCAATG | 2 cut(s) | 1453, 1470 |
| BsrFI | RCCGGY | 3 cut(s) | 34, 1084, 2333 |
| BsrI | ACTGG | 7 cut(s) | 313, 558, 959, 1624, 1627, 1945, 2353 |
| BssAI | RCCGGY | 3 cut(s) | 34, 1084, 2333 |
| BssECI | CCNNGG | 6 cut(s) | 144, 370, 2247, 2385, 2459, 3241 |
| BssHII | GCGCGC | 1 cut(s) | 460 |
| BssSI | CACGAG | 1 cut(s) | 2617 |
| BssT1I | CCWWGG | 4 cut(s) | 144, 2247, 2385, 2459 |
| Bst2BI | CACGAG | 1 cut(s) | 2617 |
| Bst2UI | CCWGG | 4 cut(s) | 44, 1869, 2829, 3027 |
| Bst4CI | ACNGT | 9 cut(s) | 798, 975, 1097, 1908, 1964, 2377, 2574, 3055, 3544 |
| Bst6I | CTCTTC | 6 cut(s) | 694, 1041, 1121, 1269, 2289, 3027 |
| BstBAI | YACGTR | 1 cut(s) | 3258 |
| BstC8I | GCNNGC | 9 cut(s) | 462, 576, 619, 899, 1086, 1225, 1662, 2335, 2738 |
| BstDSI | CCRYGG | 1 cut(s) | 370 |
| BstEII | GGTNACC | 1 cut(s) | 2233 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 143, 2794 |
| BstFNI | CGCG | 4 cut(s) | 372, 462, 464, 2229 |
| BstHHI | GCGC | 4 cut(s) | 462, 464, 1600, 3425 |
| BstMAI | GTCTC | 7 cut(s) | 546, 588, 995, 1543, 2033, 2607, 3351 |
| BstMCI | CGRYCG | 1 cut(s) | 1760 |
| BstNI | CCWGG | 4 cut(s) | 44, 1869, 2829, 3027 |
| BstNSI | RCATGY | 1 cut(s) | 1285 |
| BstPI | GGTNACC | 1 cut(s) | 2233 |
| BstSCI | CCNGG | 7 cut(s) | 42, 63, 1867, 2023, 2827, 3025, 3122 |
| BstSFI | CTRYAG | 1 cut(s) | 3129 |
| BstUI | CGCG | 4 cut(s) | 372, 462, 464, 2229 |
| BstV1I | GCAGC | 5 cut(s) | 528, 1093, 1582, 2064, 3478 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 627 |
| BstX2I | RGATCY | 4 cut(s) | 1130, 2314, 2470, 3247 |
| BstYI | RGATCY | 4 cut(s) | 1130, 2314, 2470, 3247 |
| Bsu15I | ATCGAT | 3 cut(s) | 1173, 1756, 1760 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3418 |
| BsuI | GTATCC | 2 cut(s) | 1634, 2811 |
| BsuRI | GGCC | 9 cut(s) | 149, 354, 578, 1660, 1993, 2019, 2337, 2391, 3302 |
| BsuTUI | ATCGAT | 3 cut(s) | 1173, 1756, 1760 |
| BtgI | CCRYGG | 1 cut(s) | 370 |
| BtgZI | GCGATG | 3 cut(s) | 435, 534, 2759 |
| BtrI | CACGTC | 1 cut(s) | 2008 |
| BtsI | GCAGTG | 2 cut(s) | 1186, 3138 |
| BtsIMutI | CAGTG | 9 cut(s) | 57, 306, 329, 952, 1186, 2547, 3051, 3138, 3573 |
| Cac8I | GCNNGC | 9 cut(s) | 462, 576, 619, 899, 1086, 1225, 1662, 2335, 2738 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2834 |
| CciI | TCATGA | 2 cut(s) | 1849, 1977 |
| CfoI | GCGC | 4 cut(s) | 462, 464, 1600, 3425 |
| Cfr10I | RCCGGY | 3 cut(s) | 34, 1084, 2333 |
| Cfr13I | GGNCC | 9 cut(s) | 1649, 1658, 2150, 2251, 2336, 2389, 2516, 2831, 2998 |
| Cfr42I | CCGCGG | 1 cut(s) | 373 |
| ClaI | ATCGAT | 3 cut(s) | 1173, 1756, 1760 |
| Csp6I | GTAC | 7 cut(s) | 976, 1196, 1279, 1579, 1826, 2366, 2879 |
| CviQI | GTAC | 7 cut(s) | 976, 1196, 1279, 1579, 1826, 2366, 2879 |
| DraI | TTTAAA | 2 cut(s) | 838, 2865 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2620 |
| EaeI | YGGCCR | 2 cut(s) | 576, 2017 |
| Eam1104I | CTCTTC | 6 cut(s) | 694, 1041, 1121, 1269, 2289, 3027 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2620 |
| EarI | CTCTTC | 6 cut(s) | 694, 1041, 1121, 1269, 2289, 3027 |
| EciI | GGCGGA | 4 cut(s) | 21, 76, 196, 884 |
| Ecl136II | GAGCTC | 2 cut(s) | 70, 617 |
| Eco130I | CCWWGG | 4 cut(s) | 144, 2247, 2385, 2459 |
| Eco147I | AGGCCT | 2 cut(s) | 149, 1993 |
| Eco24I | GRGCYC | 3 cut(s) | 72, 619, 1394 |
| Eco31I | GGTCTC | 1 cut(s) | 3351 |
| Eco32I | GATATC | 1 cut(s) | 1171 |
| Eco47I | GGWCC | 6 cut(s) | 1649, 2150, 2251, 2516, 2831, 2998 |
| Eco53kI | GAGCTC | 2 cut(s) | 70, 617 |
| Eco57I | CTGAAG | 6 cut(s) | 1064, 1320, 1821, 2903, 3138, 3278 |
| Eco81I | CCTNAGG | 1 cut(s) | 3418 |
| Eco91I | GGTNACC | 1 cut(s) | 2233 |
| EcoICRI | GAGCTC | 2 cut(s) | 70, 617 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 143, 2794 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1649, 2150, 2251, 2831, 2998 |
| EcoO65I | GGTNACC | 1 cut(s) | 2233 |
| EcoRI | GAATTC | 1 cut(s) | 3070 |
| EcoRII | CCWGG | 4 cut(s) | 42, 1867, 2827, 3025 |
| EcoRV | GATATC | 1 cut(s) | 1171 |
| EcoT14I | CCWWGG | 4 cut(s) | 144, 2247, 2385, 2459 |
| EcoT22I | ATGCAT | 1 cut(s) | 2129 |
| EcoT38I | GRGCYC | 3 cut(s) | 72, 619, 1394 |
| ErhI | CCWWGG | 4 cut(s) | 144, 2247, 2385, 2459 |
| Esp3I | CGTCTC | 3 cut(s) | 588, 995, 1543 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1788, 1820, 2173, 2205, 2301, 2333 |
| FaqI | GGGAC | 3 cut(s) | 1797, 2477, 3139 |
| FauI | CCCGC | 2 cut(s) | 199, 226 |
| FbaI | TGATCA | 2 cut(s) | 1930, 2104 |
| FblI | GTMKAC | 2 cut(s) | 405, 970 |
| Fnu4HI | GCNGC | 9 cut(s) | 282, 373, 514, 517, 1107, 1596, 2078, 2915, 3492 |
| FriOI | GRGCYC | 3 cut(s) | 72, 619, 1394 |
| Fsp4HI | GCNGC | 9 cut(s) | 282, 373, 514, 517, 1107, 1596, 2078, 2915, 3492 |
| FspBI | CTAG | 7 cut(s) | 1416, 1433, 1832, 2817, 2882, 3020, 3191 |
| GlaI | GCGC | 4 cut(s) | 461, 463, 1599, 3424 |
| GluI | GCNGC | 9 cut(s) | 282, 373, 514, 517, 1107, 1596, 2078, 2915, 3492 |
| GsaI | CCCAGC | 4 cut(s) | 420, 768, 1659, 3345 |
| GsuI | CTGGAG | 2 cut(s) | 2370, 2676 |
| HaeIII | GGCC | 9 cut(s) | 149, 354, 578, 1660, 1993, 2019, 2337, 2391, 3302 |
| HhaI | GCGC | 4 cut(s) | 462, 464, 1600, 3425 |
| Hin6I | GCGC | 4 cut(s) | 460, 462, 1598, 3423 |
| HinP1I | GCGC | 4 cut(s) | 460, 462, 1598, 3423 |
| HincII | GTYRAC | 2 cut(s) | 2005, 3450 |
| HindII | GTYRAC | 2 cut(s) | 2005, 3450 |
| HindIII | AAGCTT | 3 cut(s) | 714, 2117, 3401 |
| HpaI | GTTAAC | 1 cut(s) | 3450 |
| HphI | GGTGA | 8 cut(s) | 49, 1023, 1178, 1448, 1781, 1787, 2227, 2420 |
| Hpy166II | GTNNAC | 8 cut(s) | 406, 971, 1784, 2005, 2728, 2879, 3049, 3450 |
| Hpy8I | GTNNAC | 8 cut(s) | 406, 971, 1784, 2005, 2728, 2879, 3049, 3450 |
| Hpy99I | CGWCG | 6 cut(s) | 278, 281, 353, 398, 401, 404 |
| HpyCH4III | ACNGT | 9 cut(s) | 798, 975, 1097, 1908, 1964, 2377, 2574, 3055, 3544 |
| HpyCH4IV | ACGT | 4 cut(s) | 491, 2007, 3257, 3446 |
| HpySE526I | ACGT | 4 cut(s) | 491, 2007, 3257, 3446 |
| HspAI | GCGC | 4 cut(s) | 460, 462, 1598, 3423 |
| Kpn2I | TCCGGA | 1 cut(s) | 2793 |
| KpnI | GGTACC | 1 cut(s) | 1199 |
| KroI | GCCGGC | 2 cut(s) | 1084, 2333 |
| KroNI | GCCGGC | 2 cut(s) | 1086, 2335 |
| Ksp22I | TGATCA | 2 cut(s) | 1930, 2104 |
| KspAI | GTTAAC | 1 cut(s) | 3450 |
| KspI | CCGCGG | 1 cut(s) | 373 |
| Lsp1109I | GCAGC | 5 cut(s) | 528, 1093, 1582, 2064, 3478 |
| LweI | GCATC | 9 cut(s) | 50, 463, 724, 779, 1742, 2861, 3310, 3369, 3503 |
| MaeI | CTAG | 7 cut(s) | 1416, 1433, 1832, 2817, 2882, 3020, 3191 |
| MaeII | ACGT | 4 cut(s) | 491, 2007, 3257, 3446 |
| MfeI | CAATTG | 2 cut(s) | 827, 3486 |
| MflI | RGATCY | 4 cut(s) | 1130, 2314, 2470, 3247 |
| MhlI | GDGCHC | 5 cut(s) | 72, 619, 934, 1394, 3387 |
| MlsI | TGGCCA | 1 cut(s) | 2019 |
| MluNI | TGGCCA | 1 cut(s) | 2019 |
| MlyI | GAGTC | 4 cut(s) | 548, 1660, 2306, 2609 |
| MmeI | TCCRAC | 5 cut(s) | 355, 366, 978, 1696, 2267 |
| Mox20I | TGGCCA | 1 cut(s) | 2019 |
| Mph1103I | ATGCAT | 1 cut(s) | 2129 |
| MroI | TCCGGA | 1 cut(s) | 2793 |
| MroNI | GCCGGC | 2 cut(s) | 1084, 2333 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3118, 3291 |
| MscI | TGGCCA | 1 cut(s) | 2019 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1976 |
| Msp20I | TGGCCA | 1 cut(s) | 2019 |
| MspA1I | CMGCKG | 2 cut(s) | 372, 1613 |
| MspR9I | CCNGG | 7 cut(s) | 44, 65, 1869, 2025, 2829, 3027, 3124 |
| MunI | CAATTG | 2 cut(s) | 827, 3486 |
| Mva1269I | GAATGC | 3 cut(s) | 2129, 2264, 2761 |
| MvaI | CCWGG | 4 cut(s) | 44, 1869, 2829, 3027 |
| MvnI | CGCG | 4 cut(s) | 372, 462, 464, 2229 |
| NaeI | GCCGGC | 2 cut(s) | 1086, 2335 |
| NciI | CCSGG | 3 cut(s) | 65, 2025, 3124 |
| NgoMIV | GCCGGC | 2 cut(s) | 1084, 2333 |
| NlaIV | GGNNCC | 8 cut(s) | 245, 329, 893, 1197, 1313, 2152, 2253, 2962 |
| NmeAIII | GCCGAG | 1 cut(s) | 2057 |
| NmuCI | GTSAC | 4 cut(s) | 304, 1902, 2233, 3055 |
| NsiI | ATGCAT | 1 cut(s) | 2129 |
| NspI | RCATGY | 1 cut(s) | 1285 |
| PagI | TCATGA | 2 cut(s) | 1849, 1977 |
| PauI | GCGCGC | 1 cut(s) | 460 |
| PceI | AGGCCT | 2 cut(s) | 149, 1993 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 132, 399 |
| PctI | GAATGC | 3 cut(s) | 2129, 2264, 2761 |
| PdiI | GCCGGC | 2 cut(s) | 1086, 2335 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3118, 3291 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 553 |
| PfoI | TCCNGGA | 2 cut(s) | 3025, 3122 |
| PkrI | GCNGC | 9 cut(s) | 283, 374, 515, 518, 1108, 1597, 2079, 2916, 3493 |
| Ple19I | CGATCG | 1 cut(s) | 1760 |
| PleI | GAGTC | 4 cut(s) | 547, 1660, 2305, 2609 |
| PpsI | GAGTC | 4 cut(s) | 547, 1660, 2305, 2609 |
| Ppu21I | YACGTR | 1 cut(s) | 3258 |
| PpuMI | RGGWCCY | 5 cut(s) | 1649, 2150, 2251, 2831, 2998 |
| Psp124BI | GAGCTC | 2 cut(s) | 72, 619 |
| Psp5II | RGGWCCY | 5 cut(s) | 1649, 2150, 2251, 2831, 2998 |
| Psp6I | CCWGG | 4 cut(s) | 42, 1867, 2827, 3025 |
| PspEI | GGTNACC | 1 cut(s) | 2233 |
| PspFI | CCCAGC | 4 cut(s) | 416, 764, 1655, 3341 |
| PspGI | CCWGG | 4 cut(s) | 42, 1867, 2827, 3025 |
| PspN4I | GGNNCC | 8 cut(s) | 245, 329, 893, 1197, 1313, 2152, 2253, 2962 |
| PspPI | GGNCC | 9 cut(s) | 1649, 1658, 2150, 2251, 2336, 2389, 2516, 2831, 2998 |
| PspPPI | RGGWCCY | 5 cut(s) | 1649, 2150, 2251, 2831, 2998 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 677, 709 |
| PstI | CTGCAG | 1 cut(s) | 3133 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2834 |
| PsuI | RGATCY | 4 cut(s) | 1130, 2314, 2470, 3247 |
| PteI | GCGCGC | 1 cut(s) | 460 |
| PvuI | CGATCG | 1 cut(s) | 1760 |
| PvuII | CAGCTG | 1 cut(s) | 1613 |
| RsaI | GTAC | 7 cut(s) | 977, 1197, 1280, 1580, 1827, 2367, 2880 |
| RsaNI | GTAC | 7 cut(s) | 976, 1196, 1279, 1579, 1826, 2366, 2879 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1976 |
| SacI | GAGCTC | 2 cut(s) | 72, 619 |
| SacII | CCGCGG | 1 cut(s) | 373 |
| SatI | GCNGC | 9 cut(s) | 282, 373, 514, 517, 1107, 1596, 2078, 2915, 3492 |
| Sau96I | GGNCC | 9 cut(s) | 1649, 1658, 2150, 2251, 2336, 2389, 2516, 2831, 2998 |
| ScaI | AGTACT | 2 cut(s) | 977, 1580 |
| SchI | GAGTC | 4 cut(s) | 548, 1660, 2306, 2609 |
| ScrFI | CCNGG | 7 cut(s) | 44, 65, 1869, 2025, 2829, 3027, 3124 |
| SduI | GDGCHC | 5 cut(s) | 72, 619, 934, 1394, 3387 |
| SfaNI | GCATC | 9 cut(s) | 50, 463, 724, 779, 1742, 2861, 3310, 3369, 3503 |
| SfcI | CTRYAG | 1 cut(s) | 3129 |
| Sfr303I | CCGCGG | 1 cut(s) | 373 |
| SgrAI | CRCCGGYG | 1 cut(s) | 34 |
| SgrBI | CCGCGG | 1 cut(s) | 373 |
| SinI | GGWCC | 6 cut(s) | 1649, 2150, 2251, 2516, 2831, 2998 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1976 |
| SmlI | CTYRAG | 1 cut(s) | 248 |
| SmoI | CTYRAG | 1 cut(s) | 248 |
| SpeI | ACTAGT | 1 cut(s) | 2881 |
| SseBI | AGGCCT | 2 cut(s) | 149, 1993 |
| SspI | AATATT | 1 cut(s) | 1424 |
| SspMI | CTAG | 7 cut(s) | 1416, 1433, 1832, 2817, 2882, 3020, 3191 |
| SstI | GAGCTC | 2 cut(s) | 72, 619 |
| StuI | AGGCCT | 2 cut(s) | 149, 1993 |
| StyD4I | CCNGG | 7 cut(s) | 42, 63, 1867, 2023, 2827, 3025, 3122 |
| StyI | CCWWGG | 4 cut(s) | 144, 2247, 2385, 2459 |
| TaaI | ACNGT | 9 cut(s) | 798, 975, 1097, 1908, 1964, 2377, 2574, 3055, 3544 |
| TaiI | ACGT | 4 cut(s) | 494, 2010, 3260, 3449 |
| TaqI | TCGA | 7 cut(s) | 348, 876, 1173, 1756, 1760, 1923, 3497 |
| TaqII | GACCGA | 1 cut(s) | 2668 |
| TatI | WGTACW | 4 cut(s) | 975, 1278, 1578, 2878 |
| TauI | GCSGC | 4 cut(s) | 284, 375, 516, 2917 |
| TscAI | CASTG | 9 cut(s) | 57, 313, 329, 959, 1186, 2554, 3058, 3138, 3573 |
| TseFI | GTSAC | 4 cut(s) | 304, 1902, 2233, 3055 |
| TseI | GCWGC | 5 cut(s) | 516, 1106, 1595, 2077, 3491 |
| Tsp45I | GTSAC | 4 cut(s) | 304, 1902, 2233, 3055 |
| TspGWI | ACGGA | 5 cut(s) | 262, 1567, 2483, 2538, 2581 |
| TspRI | CASTG | 9 cut(s) | 57, 313, 329, 959, 1186, 2554, 3058, 3138, 3573 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 553 |
| VpaK11BI | GGWCC | 6 cut(s) | 1649, 2150, 2251, 2516, 2831, 2998 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 143, 2794 |
| XapI | RAATTY | 6 cut(s) | 840, 1142, 2216, 2565, 3070, 3306 |
| XbaI | TCTAGA | 1 cut(s) | 3190 |
| XceI | RCATGY | 1 cut(s) | 1285 |
| XmiI | GTMKAC | 2 cut(s) | 405, 970 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3118, 3291 |
| XspI | CTAG | 7 cut(s) | 1416, 1433, 1832, 2817, 2882, 3020, 3191 |
| ZrmI | AGTACT | 2 cut(s) | 977, 1580 |
| Zsp2I | ATGCAT | 1 cut(s) | 2129 |