RchiOBHm_Chr2g0096791

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011992
Physical Location & Seq
Forward (+)
9526719 .. 9532336
5618 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47168

Sequence Viewer

Length: 3558 bp
ATGGAAGAATATCCAGAGGAAATGCGGAGTCCACCGGTGAGTCTGGTCTCAGTCGTCGGCTGCTCGGAGCTCCACTCCTTCATCTCCACACACCTCCACTCTCTCGACCCTCCGATCAACACCTTGGCCTTGCCGGACCTCTCCAAGGTCTCTCTCCTCTTACCTCCCCCAAAGCCCAATCCCGCCGACTTCTCCGCCGCCGCTGCGCCTCCTCCCGCCGGAATTTTGAAGCGCGATTGGCTTCTCAAGCACCGCACCAAAGTCCCCGCCGTTGTCGCCGCCCTCATCTCCTCGGATCGGGTCTCCGGCGACCCGGCCCAGTGGCTCGAGCTCTGCTCCGAAATCGACAATCTCAAGGGGCTCATCCGCGGCCGGAGCATCAAATTGGTCGTCGTCGTCGTCAACTCCCACTCCACTGAAGAAATCTCTGAAGATCAAATGGTTGCGGTGAGGAAACGAGCTGAAGTAGATGCCAAGTATCTTCTCACGTTTTACACCGGCGAAGATTCTCAGCTTAAGCAATCTCTGCATAGATTGGGAACTGTATTTGCCGAGCTAGCCGGCATGTATTACAGAGATGAAGGAAGGAGGATTAAATTGCGCATTGAGAGGAAGAGTTCTGGTCCTACTGACTTGAACATTCGATATTCCTTCAAAGTTGCTGTGTATGCGGAGTTCAGAAGAGACTGGGTGGAAGCTTTGAGGTTTTATGAGGATGCTTATCATATGCTACGTGAGGTGATTCCCGGGGTATCAACTAGGTTGTCAGCCATTCAACGGTTAGTGGAGATAAAAACTGTGGCAGAGCAATTGCATTTCAAAATCTCAACTTTGTTATTGCATGGTGGAAAGATTATGGAAGCAGTTATATGGTTCCGCCAACACAATGCTTCGTACAGAAAGCTCAAAGGATCACCAGAAGCTATATTTCTTCACTGGGAGTGGATGAGCAGACAGTTCTTGGTGTTTGCCGAGTTGCTGGAGACAAGTTCAGCAGCCATTCAGAGCATTTCACATCTAACTGCAGGCACTGCAGATAGACCTTTGACCGAGTGGGAGTTTCAGCCAGCTCATTACTATCAGTTAGCTGCTCATTACTTGAAGGAGAAGAGATCTTCTTTGGACTTTGCAGTTTCTATGTCAGAAGGTGATATTGATTATAGTGCTGAATCTGTGGCACCCTCATCCCATATGGGTCAGTTTGCTCGATTGATTGAACAAGGAGATGCATTTGTCATGCAGCCCCTTACTGATGAAGAGTATATGCGTTATGCAATTTCTGAAGGAAAAAGGTTCCAAGATTCCTTTGAAATTATTGCTTTACTCAAAAAATCTTGTGAATCTTACACTAATCTAAAAGTCAGGAGAATGGCTTCATTTTGTGGGTTCCAGATGGCCAGAGAATATTATGCTGCAGGTGATTTTAACAACGCCAAACTTCTTTTTGATGACATTGCAAGTCTATACAGGCAAGAGGGATGGGTCACTTTGCTGTGGGAGGTATTAGGTTACTTGCGTGAAGGTTCAAGGAAACACAGCAAAGTTAAAGAATTTATAGAGTACTCCTTTGAGATGGCTGCACTCCCTATATCAGCTGATACTGGGATCCAGTCTTTTAGATTTGAAGAATCTGGTCCAGCTGGGCCTGCTACCCTCCAACAAAGAGAAACAATACATAAAGAAGTTTTTGGGCTTGTTAGTGAAAAACTGGGGTTGGCATCTACTGAAAACGGTGATGATGTCAAAGTAAGCAGCACCAATCCACTTCACCTTGAAATTGATCTCGTCAGTCCCCTTAGATTGGTACTCCTTGCTTCAGTTGCTTTTCATGAACAAATAATCAAGCCTGGCTCATCCACATTGGTTACACTGTCACTCTTATCACAGTTACCACTTAATTTTGAGATTGATCAATTAGAAGTCCAGTTCAATCAGTCTCATTGTAACTTTGTGATCATGGATGCCCAAAAGCCTCTTGTAGCTTCCTCGACTGATGGTCAATCAGGTCACCGAAGAGAGACTGCTCCATCTCTGCGACTTTCTACAAACAAATGGCTCCGGTTAACATATGACATCAAATCGGATCAAAGTGGAAAGCTTGAATGCATATCTATTATTGCCAAAATGGGACCGCACTTTACTATCTGTTGTAGAGCTGAAAGTCCTGCTTCAATGGATGATTTGCCTCTTTGGAAATTTGAAGACCGTGTGGTTACCTATCCAACCAAGGACCCAGCTCTGGCATTCTTCGGTCAGAGAGCAATTCAAGTTGAAGAACCAGACCCGGAAGTGGATCTTACTTTAGGTGCTTCTGGCCCTGCATTAATTGGAGAGAGCTTCATAGTACCTGTTACTGTCACATCCAAGGGACATGAGGTTAATTCGGGTGAGTTGAAGATCAATCTGGTGGATGTAAGGGGAGGTGGTTTGTTTAGTCCAAGGGATGCAGAACTATCTGCGGATAGTCATCATGTTGAACTTCTTGGTATATCTGGATCAGAAGGAGAAGATGAATCCCAATTGGATACCGATGAAATTAAGAAAATTCAAAAGTCTTTTGGATTGGTTTCAGTTCCTAATCTCAAAAGTGGAGACTCATGGTCATGCAAATTGGAAATCAAGTGGTATAGACCCAAACCAGTTATGCTGTATGTATCACTGGGTTATTCTCCAGATAATAATGGATCAAACACACAAAAAGTTAATGTGCACAAGAGCTTGCAGATTGAAGGAAAGAATGCAATCTCAATTAGCCATCGCCTTATGCTTCCTTTCCGCAGGTACCCGTTGTTGCTTTCTAGGACAAAATCAGTTCCTGATTCTGATCAGTCAGTGTCGATGCCTTTAAACGAAACAAGTGTACTCATTGTTAGTGCTACGAATTGCTCAGAGGTGCCACTTCAGTTACTATCATTATCTATTGAAAGAGATAATGATGACACTGAAAGGTCATGTTCTTTGCATGGAGGTGAGGACCTTTTAAACCCTGCCCTTCTTGTTCCAGGAGAGAAGTTTAAGAAGGTGTACACTGTCACTTCTGAGATGAATTCTTCAAAGCTTATATTAGGTAATGTGTGTCTTAGATGGAGAAGGAATTCTGGGACTAGAGAACAAGCTGGTTCTGCGGCTCCAGTTATGACTAACCACAAACTTCCTGATGTGAATCTGGAATCATCACCTCTTGTCGTGAGTTTGGAGTGTCCTCCTTATGCAATCCTTGGCGATCCTTTCACATATTTTGTTAAAATTCAGAACCAAACAGAACTGCTTCAAGAGGCCAAAATTTTCCTGGCAGATGCTCAAAGTTTTGTAATATCCGGGTCTCACAGTGACACGGTATATATTCTTCCAAAATCTGAGCACATCATCAGTTACAAGCTTGTCCCGCTTTCCTCAGGGGAACAACAGCTACCCAGATTCACTTTAACCGCAGTTAGATATTCCACTGGGTTTCAGCCTTCAATTGCTGCATCTACTATTTTTGTTTTCCCCTCTCAGCCTCATTTTAAGATGGTTGCTGTGGGAGACGACAGGAAGGAATCAGTGGTGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

1185

Amino Acids

132.16

Weight (kDa)

5.84

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Foie-gras_1 PF11817 260 - 527 3e-66 Foie gras liver health family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65950
fragaria_vesca FvH4_1g10000
malus_domestica MD15G1228100.v1.1
prunus_persica Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1
pyrus_communis pycom15g20290
rosa_chinensis RchiOBHm_Chr2g0096791
rosa_laevigata RLG00000016670 RLG00000023097
rosa_multiflora Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031
rosa_roxburghii Rroxscaffold_2G00145310
rosa_rugosa Rorug02G0060900
rosa_samantha Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700
rosa_wichuraiana Rw2G008370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1406
Acc16I TGCGCA 1 cut(s) 602
Acc36I ACCTGC 2 cut(s) 1406, 2769
Acc65I GGTACC 1 cut(s) 2781
AccB1I GGYRCC 3 cut(s) 1177, 2781, 2893
AccII CGCG 2 cut(s) 234, 369
AclWI GGATC 9 cut(s) 303, 919, 1600, 1613, 2091, 2301, 2503, 2692, 3218
AcoI YGGCCR 2 cut(s) 370, 1395
AcsI RAATTY 8 cut(s) 222, 1550, 2195, 2544, 3046, 3094, 3246, 3282
AcuI CTGAAG 6 cut(s) 438, 450, 483, 1302, 1800, 2885
AfaI GTAC 7 cut(s) 896, 1562, 1806, 2346, 2783, 2862, 3026
AfiI CCNNNNNNNGG 7 cut(s) 145, 218, 297, 777, 1801, 2239, 2290
AflII CTTAAG 1 cut(s) 515
AgeI ACCGGT 1 cut(s) 34
AhdI GACNNNNNGTC 2 cut(s) 1995, 2599
AjnI CCWGG 3 cut(s) 1846, 3001, 3288
Alw21I GWGCWC 4 cut(s) 72, 333, 2712, 3363
Alw44I GTGCAC 1 cut(s) 2708
AlwI GGATC 9 cut(s) 303, 919, 1600, 1613, 2091, 2301, 2503, 2692, 3218
AlwNI CAGNNNCTG 2 cut(s) 1031, 2816
Ama87I CYCGRG 2 cut(s) 326, 746
AoxI GGCC 7 cut(s) 126, 315, 370, 1395, 1643, 2314, 3276
ApaLI GTGCAC 1 cut(s) 2708
ApeKI GCWGC 9 cut(s) 60, 203, 995, 1088, 1240, 1412, 1577, 1752, 3467
ApoI RAATTY 8 cut(s) 222, 1550, 2195, 2544, 3046, 3094, 3246, 3282
ArsI GACNNNNNNTTYG 2 cut(s) 375, 407
AseI ATTAAT 1 cut(s) 2324
AsiGI ACCGGT 1 cut(s) 34
Asp700I GAANNNNTTC 3 cut(s) 1372, 3094, 3267
Asp718I GGTACC 1 cut(s) 2781
AspLEI GCGC 3 cut(s) 208, 234, 603
AspS9I GGNCC 9 cut(s) 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974
AsuC2I CCSGG 5 cut(s) 314, 747, 748, 2285, 3319
AsuNHI GCTAGC 1 cut(s) 556
AvaI CYCGRG 2 cut(s) 326, 746
AvaII GGWCC 6 cut(s) 136, 623, 1634, 2129, 2230, 2974
AxyI CCTNAGG 1 cut(s) 3394
BaeGI GKGCMC 1 cut(s) 2712
BalI TGGCCA 1 cut(s) 1397
BamHI GGATCC 1 cut(s) 1605
BanI GGYRCC 3 cut(s) 1177, 2781, 2893
BanII GRGCYC 3 cut(s) 72, 333, 363
BarI GAAGNNNNNNTAC 2 cut(s) 3330, 3362
BbsI GAAGAC 1 cut(s) 2208
Bbv12I GWGCWC 4 cut(s) 72, 333, 2712, 3363
BbvI GCAGC 9 cut(s) 47, 190, 1007, 1075, 1252, 1399, 1564, 1764, 3454
BccI CCATC 8 cut(s) 1387, 1473, 1567, 1988, 2035, 2763, 3078, 3505
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 3 cut(s) 1848, 3003, 3290
BciVI GTATCC 1 cut(s) 2518
BclI TGATCA 3 cut(s) 1909, 1953, 2824
BcnI CCSGG 5 cut(s) 314, 747, 748, 2285, 3319
BfaI CTAG 4 cut(s) 557, 759, 2799, 3105
BfmI CTRYAG 3 cut(s) 1023, 1032, 1413
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 2 cut(s) 1406, 2769
BfuI GTATCC 1 cut(s) 2518
BglII AGATCT 1 cut(s) 1112
BmcAI AGTACT 1 cut(s) 1562
Bme1390I CCNGG 8 cut(s) 314, 747, 748, 1848, 2285, 3003, 3290, 3319
Bme18I GGWCC 6 cut(s) 136, 623, 1634, 2129, 2230, 2974
BmeRI GACNNNNNGTC 2 cut(s) 1995, 2599
BmeT110I CYCGRG 2 cut(s) 326, 746
BmgT120I GGNCC 9 cut(s) 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974
BmrFI CCNGG 8 cut(s) 314, 747, 748, 1848, 2285, 3003, 3290, 3319
BmrI ACTGGG 7 cut(s) 313, 697, 946, 1611, 1718, 2669, 3456
BmtI GCTAGC 1 cut(s) 560
BmuI ACTGGG 7 cut(s) 313, 697, 946, 1611, 1718, 2669, 3456
BpiI GAAGAC 1 cut(s) 2208
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 320, 352
BpmI CTGGAG 3 cut(s) 1001, 2655, 3114
BpuEI CTTGAG 2 cut(s) 230, 338
BpuMI CCSGG 5 cut(s) 314, 747, 748, 2285, 3319
BsaAI YACGTR 1 cut(s) 734
BsaBI GATNNNNATC 4 cut(s) 720, 2466, 2823, 3162
BsaI GGTCTC 4 cut(s) 52, 154, 307, 3327
BsaWI WCCGGW 2 cut(s) 34, 2058
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 7 cut(s) 145, 218, 297, 777, 1801, 2239, 2290
Bse118I RCCGGY 3 cut(s) 34, 497, 560
Bse21I CCTNAGG 1 cut(s) 3394
Bse3DI GCAATG 1 cut(s) 1452
Bse8I GATNNNNATC 4 cut(s) 720, 2466, 2823, 3162
BseBI CCWGG 3 cut(s) 1848, 3003, 3290
BseJI GATNNNNATC 4 cut(s) 720, 2466, 2823, 3162
BseLI CCNNNNNNNGG 7 cut(s) 145, 218, 297, 777, 1801, 2239, 2290
BseMI GCAATG 1 cut(s) 1452
BseMII CTCAG 7 cut(s) 63, 524, 2901, 3030, 3348, 3408, 3509
BseRI GAGGAG 3 cut(s) 146, 201, 280
BseSI GKGCMC 1 cut(s) 2712
BseX3I CGGCCG 1 cut(s) 370
BseXI GCAGC 9 cut(s) 47, 190, 1007, 1075, 1252, 1399, 1564, 1764, 3454
BseYI CCCAGC 2 cut(s) 1640, 2233
BsgI GTGCAG 1 cut(s) 1563
Bsh1236I CGCG 2 cut(s) 234, 369
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 7 cut(s) 128, 317, 372, 1397, 1645, 2316, 3278
BshNI GGYRCC 3 cut(s) 1177, 2781, 2893
BshTI ACCGGT 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 4 cut(s) 72, 333, 2712, 3363
BsiHKCI CYCGRG 2 cut(s) 326, 746
BslFI GGGAC 6 cut(s) 248, 1776, 2142, 2382, 3115, 3368
BslI CCNNNNNNNGG 7 cut(s) 145, 218, 297, 777, 1801, 2239, 2290
BsmBI CGTCTC 1 cut(s) 3519
BsmFI GGGAC 6 cut(s) 248, 1776, 2142, 2382, 3115, 3368
BsmI GAATGC 3 cut(s) 2108, 2243, 2743
BsnI GGCC 7 cut(s) 128, 317, 372, 1397, 1645, 2316, 3278
Bso31I GGTCTC 4 cut(s) 52, 154, 307, 3327
BsoBI CYCGRG 2 cut(s) 326, 746
Bsp1286I GDGCHC 5 cut(s) 72, 333, 363, 2712, 3363
Bsp1407I TGTACA 1 cut(s) 3024
BspANI GGCC 7 cut(s) 128, 317, 372, 1397, 1645, 2316, 3278
BspCNI CTCAG 7 cut(s) 62, 523, 2900, 3031, 3349, 3407, 3508
BspFNI CGCG 2 cut(s) 234, 369
BspHI TCATGA 1 cut(s) 1828
BspMAI CTGCAG 3 cut(s) 1027, 1036, 1417
BspMI ACCTGC 2 cut(s) 1406, 2769
BspOI GCTAGC 1 cut(s) 560
BspPI GGATC 9 cut(s) 303, 919, 1600, 1613, 2091, 2301, 2503, 2692, 3218
BspT107I GGYRCC 3 cut(s) 1177, 2781, 2893
BspTI CTTAAG 1 cut(s) 515
BspTNI GGTCTC 4 cut(s) 52, 154, 307, 3327
BsrDI GCAATG 1 cut(s) 1452
BsrFI RCCGGY 3 cut(s) 34, 497, 560
BsrGI TGTACA 1 cut(s) 3024
BssAI RCCGGY 3 cut(s) 34, 497, 560
BssT1I CCWWGG 6 cut(s) 123, 144, 2226, 2364, 2438, 3217
Bst2UI CCWGG 3 cut(s) 1848, 3003, 3290
Bst6I CTCTTC 5 cut(s) 608, 676, 1103, 1251, 2008
BstAFI CTTAAG 1 cut(s) 515
BstAPI GCANNNNNTGC 2 cut(s) 526, 1031
BstAUI TGTACA 1 cut(s) 3024
BstBAI YACGTR 1 cut(s) 734
BstC8I GCNNGC 6 cut(s) 558, 562, 1027, 1068, 1647, 2720
BstDEI CTNAG 9 cut(s) 49, 510, 1796, 2887, 3039, 3080, 3357, 3394, 3495
BstDSI CCRYGG 1 cut(s) 367
BstEII GGTNACC 2 cut(s) 2006, 2212
BstENI CCTNNNNNAGG 1 cut(s) 143
BstFNI CGCG 2 cut(s) 234, 369
BstHHI GCGC 3 cut(s) 208, 234, 603
BstMCI CGRYCG 1 cut(s) 373
BstNI CCWGG 3 cut(s) 1848, 3003, 3290
BstNSI RCATGY 1 cut(s) 568
BstPI GGTNACC 2 cut(s) 2006, 2212
BstSCI CCNGG 8 cut(s) 312, 745, 746, 1846, 2283, 3001, 3288, 3317
BstSFI CTRYAG 3 cut(s) 1023, 1032, 1413
BstSLI GKGCMC 1 cut(s) 2712
BstUI CGCG 2 cut(s) 234, 369
BstV1I GCAGC 9 cut(s) 47, 190, 1007, 1075, 1252, 1399, 1564, 1764, 3454
BstV2I GAAGAC 1 cut(s) 2208
BstX2I RGATCY 3 cut(s) 1112, 1605, 2293
BstYI RGATCY 3 cut(s) 1112, 1605, 2293
BstZI CGGCCG 1 cut(s) 370
Bsu36I CCTNAGG 1 cut(s) 3394
BsuI GTATCC 1 cut(s) 2518
BsuRI GGCC 7 cut(s) 128, 317, 372, 1397, 1645, 2316, 3278
BtgI CCRYGG 1 cut(s) 367
BtgZI GCGATG 1 cut(s) 2741
BtsI GCAGTG 1 cut(s) 1029
BveI ACCTGC 2 cut(s) 1406, 2769
Cac8I GCNNGC 6 cut(s) 558, 562, 1027, 1068, 1647, 2720
CaiI CAGNNNCTG 2 cut(s) 1031, 2816
CciI TCATGA 1 cut(s) 1828
CfoI GCGC 3 cut(s) 208, 234, 603
Cfr10I RCCGGY 3 cut(s) 34, 497, 560
Cfr13I GGNCC 9 cut(s) 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974
Cfr42I CCGCGG 1 cut(s) 370
Cfr9I CCCGGG 1 cut(s) 746
Csp6I GTAC 7 cut(s) 895, 1561, 1805, 2345, 2782, 2861, 3025
CspAI ACCGGT 1 cut(s) 34
CviQI GTAC 7 cut(s) 895, 1561, 1805, 2345, 2782, 2861, 3025
DdeI CTNAG 9 cut(s) 49, 510, 1796, 2887, 3039, 3080, 3357, 3394, 3495
DraI TTTAAA 2 cut(s) 2847, 2982
DriI GACNNNNNGTC 2 cut(s) 1995, 2599
EaeI YGGCCR 2 cut(s) 370, 1395
EagI CGGCCG 1 cut(s) 370
Eam1104I CTCTTC 5 cut(s) 608, 676, 1103, 1251, 2008
Eam1105I GACNNNNNGTC 2 cut(s) 1995, 2599
EarI CTCTTC 5 cut(s) 608, 676, 1103, 1251, 2008
EciI GGCGGA 2 cut(s) 184, 866
Ecl136II GAGCTC 2 cut(s) 70, 331
EclXI CGGCCG 1 cut(s) 370
Eco130I CCWWGG 6 cut(s) 123, 144, 2226, 2364, 2438, 3217
Eco24I GRGCYC 3 cut(s) 72, 333, 363
Eco31I GGTCTC 4 cut(s) 52, 154, 307, 3327
Eco47I GGWCC 6 cut(s) 136, 623, 1634, 2129, 2230, 2974
Eco52I CGGCCG 1 cut(s) 370
Eco53kI GAGCTC 2 cut(s) 70, 331
Eco57I CTGAAG 6 cut(s) 438, 450, 483, 1302, 1800, 2885
Eco81I CCTNAGG 1 cut(s) 3394
Eco88I CYCGRG 2 cut(s) 326, 746
Eco91I GGTNACC 2 cut(s) 2006, 2212
EcoICRI GAGCTC 2 cut(s) 70, 331
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO109I RGGNCCY 2 cut(s) 2230, 2974
EcoO65I GGTNACC 2 cut(s) 2006, 2212
EcoRI GAATTC 2 cut(s) 3046, 3094
EcoRII CCWGG 3 cut(s) 1846, 3001, 3288
EcoT14I CCWWGG 6 cut(s) 123, 144, 2226, 2364, 2438, 3217
EcoT22I ATGCAT 2 cut(s) 1231, 2108
EcoT38I GRGCYC 3 cut(s) 72, 333, 363
ErhI CCWWGG 6 cut(s) 123, 144, 2226, 2364, 2438, 3217
Esp3I CGTCTC 1 cut(s) 3519
FalI AAGNNNNNCTT 4 cut(s) 2152, 2184, 2280, 2312
FaqI GGGAC 6 cut(s) 248, 1776, 2142, 2382, 3115, 3368
FauI CCCGC 4 cut(s) 190, 223, 274, 3393
FauNDI CATATG 3 cut(s) 726, 1191, 2068
FbaI TGATCA 3 cut(s) 1909, 1953, 2824
FriOI GRGCYC 3 cut(s) 72, 333, 363
FspBI CTAG 4 cut(s) 557, 759, 2799, 3105
FspI TGCGCA 1 cut(s) 602
GlaI GCGC 3 cut(s) 207, 233, 602
GsaI CCCAGC 2 cut(s) 1644, 2237
GsuI CTGGAG 3 cut(s) 1001, 2655, 3114
HaeIII GGCC 7 cut(s) 128, 317, 372, 1397, 1645, 2316, 3278
HhaI GCGC 3 cut(s) 208, 234, 603
Hin6I GCGC 3 cut(s) 206, 232, 601
HinP1I GCGC 3 cut(s) 206, 232, 601
HincII GTYRAC 2 cut(s) 403, 2064
HindII GTYRAC 2 cut(s) 403, 2064
HindIII AAGCTT 4 cut(s) 696, 2096, 3056, 3377
HpaI GTTAAC 1 cut(s) 2064
Hpy166II GTNNAC 7 cut(s) 32, 403, 2064, 2710, 2861, 3025, 3027
Hpy8I GTNNAC 7 cut(s) 32, 403, 2064, 2710, 2861, 3025, 3027
Hpy99I CGWCG 4 cut(s) 59, 395, 398, 401
HpyCH4IV ACGT 2 cut(s) 488, 733
HpyF3I CTNAG 9 cut(s) 49, 510, 1796, 2887, 3039, 3080, 3357, 3394, 3495
HpySE526I ACGT 2 cut(s) 488, 733
HspAI GCGC 3 cut(s) 206, 232, 601
KpnI GGTACC 1 cut(s) 2785
KroI GCCGGC 1 cut(s) 560
KroNI GCCGGC 1 cut(s) 562
Ksp22I TGATCA 3 cut(s) 1909, 1953, 2824
KspAI GTTAAC 1 cut(s) 2064
KspI CCGCGG 1 cut(s) 370
LmnI GCTCC 7 cut(s) 67, 75, 341, 375, 2029, 2061, 3133
Lsp1109I GCAGC 9 cut(s) 47, 190, 1007, 1075, 1252, 1399, 1564, 1764, 3454
MaeI CTAG 4 cut(s) 557, 759, 2799, 3105
MaeII ACGT 2 cut(s) 488, 733
MfeI CAATTG 3 cut(s) 809, 2519, 3462
MflI RGATCY 3 cut(s) 1112, 1605, 2293
MhlI GDGCHC 5 cut(s) 72, 333, 363, 2712, 3363
MlsI TGGCCA 1 cut(s) 1397
MluNI TGGCCA 1 cut(s) 1397
MlyI GAGTC 3 cut(s) 37, 49, 2588
MmeI TCCRAC 2 cut(s) 1681, 2246
Mox20I TGGCCA 1 cut(s) 1397
Mph1103I ATGCAT 2 cut(s) 1231, 2108
MroNI GCCGGC 1 cut(s) 560
MroXI GAANNNNTTC 3 cut(s) 1372, 3094, 3267
MscI TGGCCA 1 cut(s) 1397
MslI CAYNNNNRTG 2 cut(s) 2602, 2967
Msp20I TGGCCA 1 cut(s) 1397
MspA1I CMGCKG 4 cut(s) 203, 369, 1595, 1640
MspCI CTTAAG 1 cut(s) 515
MspR9I CCNGG 8 cut(s) 314, 747, 748, 1848, 2285, 3003, 3290, 3319
MunI CAATTG 3 cut(s) 809, 2519, 3462
Mva1269I GAATGC 3 cut(s) 2108, 2243, 2743
MvaI CCWGG 3 cut(s) 1848, 3003, 3290
MvnI CGCG 2 cut(s) 234, 369
NaeI GCCGGC 1 cut(s) 562
NciI CCSGG 5 cut(s) 314, 747, 748, 2285, 3319
NdeI CATATG 3 cut(s) 726, 1191, 2068
NgoMIV GCCGGC 1 cut(s) 560
NheI GCTAGC 1 cut(s) 556
NmeAIII GCCGAG 2 cut(s) 577, 997
NmuCI GTSAC 6 cut(s) 1483, 1872, 2006, 2356, 3031, 3329
NsbI TGCGCA 1 cut(s) 602
NsiI ATGCAT 2 cut(s) 1231, 2108
NspI RCATGY 1 cut(s) 568
PaeR7I CTCGAG 1 cut(s) 326
PagI TCATGA 1 cut(s) 1828
PaqCI CACCTGC 1 cut(s) 1406
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 3 cut(s) 2108, 2243, 2743
PdiI GCCGGC 1 cut(s) 562
PdmI GAANNNNTTC 3 cut(s) 1372, 3094, 3267
PfoI TCCNGGA 1 cut(s) 3001
PinAI ACCGGT 1 cut(s) 34
PleI GAGTC 3 cut(s) 36, 48, 2588
PpsI GAGTC 3 cut(s) 36, 48, 2588
Ppu21I YACGTR 1 cut(s) 734
PpuMI RGGWCCY 2 cut(s) 2230, 2974
PshBI ATTAAT 1 cut(s) 2324
Psp124BI GAGCTC 2 cut(s) 72, 333
Psp5II RGGWCCY 2 cut(s) 2230, 2974
Psp6I CCWGG 3 cut(s) 1846, 3001, 3288
PspEI GGTNACC 2 cut(s) 2006, 2212
PspFI CCCAGC 2 cut(s) 1640, 2233
PspGI CCWGG 3 cut(s) 1846, 3001, 3288
PspPI GGNCC 9 cut(s) 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974
PspPPI RGGWCCY 2 cut(s) 2230, 2974
PspXI VCTCGAGB 1 cut(s) 326
PsrI GAACNNNNNNTAC 4 cut(s) 659, 691, 3393, 3425
PstI CTGCAG 3 cut(s) 1027, 1036, 1417
PstNI CAGNNNCTG 2 cut(s) 1031, 2816
PsuI RGATCY 3 cut(s) 1112, 1605, 2293
PvuII CAGCTG 2 cut(s) 1595, 1640
RsaI GTAC 7 cut(s) 896, 1562, 1806, 2346, 2783, 2862, 3026
RsaNI GTAC 7 cut(s) 895, 1561, 1805, 2345, 2782, 2861, 3025
RseI CAYNNNNRTG 2 cut(s) 2602, 2967
SacI GAGCTC 2 cut(s) 72, 333
SacII CCGCGG 1 cut(s) 370
Sau96I GGNCC 9 cut(s) 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974
ScaI AGTACT 1 cut(s) 1562
SchI GAGTC 3 cut(s) 37, 49, 2588
ScrFI CCNGG 8 cut(s) 314, 747, 748, 1848, 2285, 3003, 3290, 3319
SduI GDGCHC 5 cut(s) 72, 333, 363, 2712, 3363
SfcI CTRYAG 3 cut(s) 1023, 1032, 1413
Sfr274I CTCGAG 1 cut(s) 326
Sfr303I CCGCGG 1 cut(s) 370
SgrAI CRCCGGYG 2 cut(s) 34, 497
SgrBI CCGCGG 1 cut(s) 370
SinI GGWCC 6 cut(s) 136, 623, 1634, 2129, 2230, 2974
SlaI CTCGAG 1 cut(s) 326
SmaI CCCGGG 1 cut(s) 748
SmiMI CAYNNNNRTG 2 cut(s) 2602, 2967
SmlI CTYRAG 4 cut(s) 245, 326, 353, 515
SmoI CTYRAG 4 cut(s) 245, 326, 353, 515
SspI AATATT 1 cut(s) 1406
SspMI CTAG 4 cut(s) 557, 759, 2799, 3105
SstI GAGCTC 2 cut(s) 72, 333
StyD4I CCNGG 8 cut(s) 312, 745, 746, 1846, 2283, 3001, 3288, 3317
StyI CCWWGG 6 cut(s) 123, 144, 2226, 2364, 2438, 3217
TaiI ACGT 2 cut(s) 491, 736
TaqI TCGA 7 cut(s) 105, 327, 345, 643, 1207, 1988, 2837
TaqII GACCGA 2 cut(s) 1064, 2240
TatI WGTACW 3 cut(s) 1560, 2860, 3024
TauI GCSGC 5 cut(s) 200, 203, 281, 372, 3128
TseFI GTSAC 6 cut(s) 1483, 1872, 2006, 2356, 3031, 3329
TseI GCWGC 9 cut(s) 60, 203, 995, 1088, 1240, 1412, 1577, 1752, 3467
Tsp45I GTSAC 6 cut(s) 1483, 1872, 2006, 2356, 3031, 3329
TspMI CCCGGG 1 cut(s) 746
Vha464I CTTAAG 1 cut(s) 515
VneI GTGCAC 1 cut(s) 2708
VpaK11BI GGWCC 6 cut(s) 136, 623, 1634, 2129, 2230, 2974
VspI ATTAAT 1 cut(s) 2324
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 8 cut(s) 222, 1550, 2195, 2544, 3046, 3094, 3246, 3282
XceI RCATGY 1 cut(s) 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 3286
XhoI CTCGAG 1 cut(s) 326
XmaI CCCGGG 1 cut(s) 746
XmnI GAANNNNTTC 3 cut(s) 1372, 3094, 3267
XspI CTAG 4 cut(s) 557, 759, 2799, 3105
ZrmI AGTACT 1 cut(s) 1562
Zsp2I ATGCAT 2 cut(s) 1231, 2108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.