Rmu_sc0004938.1_g000018

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004938.1
OG0011992
Physical Location & Seq
Forward (+)
58534 .. 61470
2937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004938.1_g000018.1.cds

Sequence Viewer

Length: 2100 bp
atggaagaatatccagaggaaatgcggagtccaccggtgagtctggtctcagtcgtcggctgctcggagctccactccttcatctccacacacctccactctctcgaccctccgatcaacaccttggccttgccggacctctccaaggtctctctcctcttacctccccccaagcccaatcccgccgactcctccgccgccgccgccgcgcctcctcccgccggaattttgaagcgcgattggcttctcaagcaccgcaccaaagtccccgccgttgtcgccgccctcatctcctcggatcgggtctccggcgacccggcccagtggctcgagctctgctccgagatcgacaatctcaaggggctcatccgcggccggagcatcaaattggtcgtcgtcgtcgtcaactcccactccactgaagaaatctctgaagatcaaatggttgcggtgaggaaacgagctgaagtagatgccaagtatcttctcacgttctacaccggcgaagattctcagcttaagcaatctctgcatagattgggaactgtatttgccgagctagccggcatgtattacagagatgaaggaagaaggattaaattgcgcattgagaggaagagttctggtcctactgacttgaacattcgatattccttcaaagttgctgtgtttgcggagttcagaagagactgggtggaagctttgaggttttatgaggatgcttatcatatgctacgtgaggtgattcccggggtgtcaactaggttgtcagccattcaacggttagtggagataaaaactgtggcagagcaattgcatttcaaaatctcaactttgttattgcatggtggaaagattatggaagcagttatatggttccgccaacacaatgcttcgtacagaaagctcaaaggatcaccagaagctatatttcttcactgggagtggatgagcagacagttcttggtgtttgctgagttgctggagacaagttcagcagccattcagagcatttcacatctaactgcaggcactgcagatagacctttgaccgagtgggagtttcagccagctcattactatcagttagctgctcattacttgaaggagaagagatcttctttggactttgcagtttctatgtcagaaggtgagattgattatagtgctgaatctgtggcaccctcatcccatatgggtcagtttgctcgattgattgaacaaggagatgcatttgtcatgcagccccttactgatgaagagtatatgcgttatgcaatttctgaaggaaaaaggttccaagattcctttgaaattattgctttactcaaaaaatcttgtgaatcttacaataatctaaaagtcaggagaatggcttcattttgtgggttccagatggccagagaatattatgctgcaggtgattttaacaacgccaaacttctttttgatgacattgcaagtctatacaggcaagagggatgggtcactttgctgtgggaggtattaggttacttgcgtgaaggttcaaggaaacacagcaaagttaaagaatttatagagtactcctttgagatggctgcactccctatatcagctgatactgggatccagtcttttagatttgaagaatctggtccagctgggcctgctaccctccaacaaagagaaacaatacataaagaagtttttgggcttgttagtgaaaaactggggttggcatctactgaaaacggtgatgatgtcaaagtaagcggcaccaatccacttcaccttgaaattgatctcgtcagtccccttagattggtactccttgcttcagttgcttttcatgaacaaataatcaagcctggctcatccacattggttacactgtcactcttatcacagttaccacttaattttgagattgatcaattagaagtccagttcaatcagtctcattgtaactttgtgatcatggatgcccaaaagcctcatgtagcttcctcgactgatggtcaatcaggtcaccgaagagagactgctccatctctgcgactttctacaaacaaatggctccggttaacgtatgacatcaaatcgggtatgcctccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

699

Amino Acids

78.73

Weight (kDa)

6.16

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65950
fragaria_vesca FvH4_1g10000
malus_domestica MD15G1228100.v1.1
prunus_persica Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1
pyrus_communis pycom15g20290
rosa_chinensis RchiOBHm_Chr2g0096791
rosa_laevigata RLG00000016670 RLG00000023097
rosa_multiflora Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031
rosa_roxburghii Rroxscaffold_2G00145310
rosa_rugosa Rorug02G0060900
rosa_samantha Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700
rosa_wichuraiana Rw2G008370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1409
Acc16I TGCGCA 1 cut(s) 605
Acc36I ACCTGC 1 cut(s) 1409
AccB1I GGYRCC 2 cut(s) 1180, 1757
AccII CGCG 3 cut(s) 209, 237, 372
AclWI GGATC 4 cut(s) 306, 922, 1603, 1616
AcoI YGGCCR 2 cut(s) 373, 1398
AcsI RAATTY 2 cut(s) 225, 1553
AcuI CTGAAG 5 cut(s) 441, 453, 486, 1305, 1803
AfaI GTAC 3 cut(s) 899, 1565, 1809
AfiI CCNNNNNNNGG 5 cut(s) 145, 221, 300, 780, 1804
AflII CTTAAG 1 cut(s) 518
AgeI ACCGGT 1 cut(s) 34
AhdI GACNNNNNGTC 1 cut(s) 1998
AjnI CCWGG 1 cut(s) 1849
Alw21I GWGCWC 2 cut(s) 72, 336
Alw26I GTCTC 7 cut(s) 52, 154, 310, 681, 980, 1944, 2015
AlwI GGATC 4 cut(s) 306, 922, 1603, 1616
AlwNI CAGNNNCTG 1 cut(s) 1034
Ama87I CYCGRG 2 cut(s) 329, 749
AoxI GGCC 5 cut(s) 126, 318, 373, 1398, 1646
ApeKI GCWGC 6 cut(s) 60, 998, 1091, 1243, 1415, 1580
ApoI RAATTY 2 cut(s) 225, 1553
ArsI GACNNNNNNTTYG 2 cut(s) 378, 410
AsiGI ACCGGT 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 1375
AspLEI GCGC 3 cut(s) 211, 237, 606
AspS9I GGNCC 5 cut(s) 136, 319, 626, 1637, 1646
AsuC2I CCSGG 3 cut(s) 317, 750, 751
AsuHPI GGTGA 9 cut(s) 49, 463, 754, 909, 1163, 1433, 1748, 1763, 2003
AsuNHI GCTAGC 1 cut(s) 559
AvaI CYCGRG 2 cut(s) 329, 749
AvaII GGWCC 3 cut(s) 136, 626, 1637
BalI TGGCCA 1 cut(s) 1400
BamHI GGATCC 1 cut(s) 1608
BanI GGYRCC 2 cut(s) 1180, 1757
BanII GRGCYC 3 cut(s) 72, 336, 366
Bbv12I GWGCWC 2 cut(s) 72, 336
BbvI GCAGC 6 cut(s) 47, 1010, 1078, 1255, 1402, 1567
BccI CCATC 5 cut(s) 1390, 1476, 1570, 1991, 2038
BceAI ACGGC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 1851
BclI TGATCA 2 cut(s) 1912, 1956
BcnI CCSGG 3 cut(s) 317, 750, 751
BcoDI GTCTC 7 cut(s) 52, 154, 310, 681, 980, 1944, 2015
BfaI CTAG 2 cut(s) 560, 762
BfmI CTRYAG 3 cut(s) 1026, 1035, 1416
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 1 cut(s) 1409
BglII AGATCT 1 cut(s) 1115
BmcAI AGTACT 1 cut(s) 1565
Bme1390I CCNGG 4 cut(s) 317, 750, 751, 1851
Bme18I GGWCC 3 cut(s) 136, 626, 1637
BmeRI GACNNNNNGTC 1 cut(s) 1998
BmeT110I CYCGRG 2 cut(s) 329, 749
BmgT120I GGNCC 5 cut(s) 136, 319, 626, 1637, 1646
BmiI GGNNCC 7 cut(s) 878, 1182, 1298, 1391, 1610, 1759, 2060
BmrFI CCNGG 4 cut(s) 317, 750, 751, 1851
BmrI ACTGGG 5 cut(s) 316, 700, 949, 1614, 1721
BmsI GCATC 6 cut(s) 390, 463, 709, 1219, 1730, 1954
BmtI GCTAGC 1 cut(s) 563
BmuI ACTGGG 5 cut(s) 316, 700, 949, 1614, 1721
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 323, 355
BpmI CTGGAG 1 cut(s) 1004
BpuEI CTTGAG 2 cut(s) 233, 341
BpuMI CCSGG 3 cut(s) 317, 750, 751
BsaAI YACGTR 1 cut(s) 737
BsaBI GATNNNNATC 1 cut(s) 723
BsaI GGTCTC 3 cut(s) 52, 154, 310
BsaJI CCNNGG 6 cut(s) 123, 144, 294, 370, 749, 750
BsaWI WCCGGW 2 cut(s) 34, 2061
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 221, 300, 780, 1804
Bse118I RCCGGY 3 cut(s) 34, 500, 563
Bse1I ACTGG 7 cut(s) 322, 695, 944, 1609, 1612, 1716, 1927
Bse3DI GCAATG 1 cut(s) 1455
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 1 cut(s) 1851
BseDI CCNNGG 6 cut(s) 123, 144, 294, 370, 749, 750
BseGI GGATG 7 cut(s) 366, 724, 954, 1187, 1487, 1856, 1969
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 5 cut(s) 145, 221, 300, 780, 1804
BseMI GCAATG 1 cut(s) 1455
BseMII CTCAG 3 cut(s) 63, 527, 966
BseNI ACTGG 7 cut(s) 322, 695, 944, 1609, 1612, 1716, 1927
BseRI GAGGAG 4 cut(s) 146, 181, 204, 283
BseX3I CGGCCG 1 cut(s) 373
BseXI GCAGC 6 cut(s) 47, 1010, 1078, 1255, 1402, 1567
BseYI CCCAGC 1 cut(s) 1643
BsgI GTGCAG 1 cut(s) 1566
Bsh1236I CGCG 3 cut(s) 209, 237, 372
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 5 cut(s) 128, 320, 375, 1400, 1648
BshNI GGYRCC 2 cut(s) 1180, 1757
BshTI ACCGGT 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 376
BsiHKAI GWGCWC 2 cut(s) 72, 336
BsiHKCI CYCGRG 2 cut(s) 329, 749
BslFI GGGAC 2 cut(s) 251, 1779
BslI CCNNNNNNNGG 5 cut(s) 145, 221, 300, 780, 1804
BsmAI GTCTC 7 cut(s) 52, 154, 310, 681, 980, 1944, 2015
BsmFI GGGAC 2 cut(s) 251, 1779
BsnI GGCC 5 cut(s) 128, 320, 375, 1400, 1648
Bso31I GGTCTC 3 cut(s) 52, 154, 310
BsoBI CYCGRG 2 cut(s) 329, 749
Bsp1286I GDGCHC 3 cut(s) 72, 336, 366
BspANI GGCC 5 cut(s) 128, 320, 375, 1400, 1648
BspCNI CTCAG 3 cut(s) 62, 526, 967
BspFNI CGCG 3 cut(s) 209, 237, 372
BspHI TCATGA 1 cut(s) 1831
BspLI GGNNCC 7 cut(s) 878, 1182, 1298, 1391, 1610, 1759, 2060
BspMAI CTGCAG 3 cut(s) 1030, 1039, 1420
BspMI ACCTGC 1 cut(s) 1409
BspOI GCTAGC 1 cut(s) 563
BspPI GGATC 4 cut(s) 306, 922, 1603, 1616
BspT107I GGYRCC 2 cut(s) 1180, 1757
BspTI CTTAAG 1 cut(s) 518
BspTNI GGTCTC 3 cut(s) 52, 154, 310
BsrDI GCAATG 1 cut(s) 1455
BsrFI RCCGGY 3 cut(s) 34, 500, 563
BsrI ACTGG 7 cut(s) 322, 695, 944, 1609, 1612, 1716, 1927
BssAI RCCGGY 3 cut(s) 34, 500, 563
BssECI CCNNGG 6 cut(s) 123, 144, 294, 370, 749, 750
BssT1I CCWWGG 2 cut(s) 123, 144
Bst2UI CCWGG 1 cut(s) 1851
Bst4CI ACNGT 7 cut(s) 547, 783, 802, 960, 1736, 1875, 1890
Bst6I CTCTTC 5 cut(s) 611, 679, 1106, 1254, 2011
BstAFI CTTAAG 1 cut(s) 518
BstAPI GCANNNNNTGC 2 cut(s) 529, 1034
BstBAI YACGTR 1 cut(s) 737
BstC8I GCNNGC 5 cut(s) 561, 565, 1030, 1071, 1650
BstDEI CTNAG 4 cut(s) 49, 513, 975, 1799
BstDSI CCRYGG 1 cut(s) 370
BstEII GGTNACC 1 cut(s) 2009
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 7 cut(s) 366, 724, 954, 1187, 1487, 1856, 1969
BstFNI CGCG 3 cut(s) 209, 237, 372
BstHHI GCGC 3 cut(s) 211, 237, 606
BstMAI GTCTC 7 cut(s) 52, 154, 310, 681, 980, 1944, 2015
BstMCI CGRYCG 1 cut(s) 376
BstNI CCWGG 1 cut(s) 1851
BstNSI RCATGY 1 cut(s) 571
BstPI GGTNACC 1 cut(s) 2009
BstSCI CCNGG 4 cut(s) 315, 748, 749, 1849
BstSFI CTRYAG 3 cut(s) 1026, 1035, 1416
BstUI CGCG 3 cut(s) 209, 237, 372
BstV1I GCAGC 6 cut(s) 47, 1010, 1078, 1255, 1402, 1567
BstX2I RGATCY 2 cut(s) 1115, 1608
BstYI RGATCY 2 cut(s) 1115, 1608
BstZI CGGCCG 1 cut(s) 373
BsuRI GGCC 5 cut(s) 128, 320, 375, 1400, 1648
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 7 cut(s) 366, 724, 954, 1187, 1487, 1856, 1969
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 5 cut(s) 329, 417, 937, 1032, 1871
BveI ACCTGC 1 cut(s) 1409
Cac8I GCNNGC 5 cut(s) 561, 565, 1030, 1071, 1650
CaiI CAGNNNCTG 1 cut(s) 1034
CciI TCATGA 1 cut(s) 1831
CfoI GCGC 3 cut(s) 211, 237, 606
Cfr10I RCCGGY 3 cut(s) 34, 500, 563
Cfr13I GGNCC 5 cut(s) 136, 319, 626, 1637, 1646
Cfr42I CCGCGG 1 cut(s) 373
Cfr9I CCCGGG 1 cut(s) 749
Csp6I GTAC 3 cut(s) 898, 1564, 1808
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 7 cut(s) 568, 845, 1240, 1832, 1960, 1979, 2097
CviQI GTAC 3 cut(s) 898, 1564, 1808
DdeI CTNAG 4 cut(s) 49, 513, 975, 1799
DriI GACNNNNNGTC 1 cut(s) 1998
EaeI YGGCCR 2 cut(s) 373, 1398
EagI CGGCCG 1 cut(s) 373
Eam1104I CTCTTC 5 cut(s) 611, 679, 1106, 1254, 2011
Eam1105I GACNNNNNGTC 1 cut(s) 1998
EarI CTCTTC 5 cut(s) 611, 679, 1106, 1254, 2011
EciI GGCGGA 2 cut(s) 184, 869
Ecl136II GAGCTC 2 cut(s) 70, 334
EclXI CGGCCG 1 cut(s) 373
Eco130I CCWWGG 2 cut(s) 123, 144
Eco24I GRGCYC 3 cut(s) 72, 336, 366
Eco31I GGTCTC 3 cut(s) 52, 154, 310
Eco47I GGWCC 3 cut(s) 136, 626, 1637
Eco52I CGGCCG 1 cut(s) 373
Eco53kI GAGCTC 2 cut(s) 70, 334
Eco57I CTGAAG 5 cut(s) 441, 453, 486, 1305, 1803
Eco88I CYCGRG 2 cut(s) 329, 749
Eco91I GGTNACC 1 cut(s) 2009
EcoICRI GAGCTC 2 cut(s) 70, 334
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 2009
EcoRII CCWGG 1 cut(s) 1849
EcoT14I CCWWGG 2 cut(s) 123, 144
EcoT22I ATGCAT 1 cut(s) 1234
EcoT38I GRGCYC 3 cut(s) 72, 336, 366
ErhI CCWWGG 2 cut(s) 123, 144
FaeI CATG 7 cut(s) 571, 848, 1243, 1835, 1963, 1982, 2100
FaqI GGGAC 2 cut(s) 251, 1779
FatI CATG 7 cut(s) 567, 844, 1239, 1831, 1959, 1978, 2096
FauI CCCGC 3 cut(s) 190, 226, 277
FauNDI CATATG 2 cut(s) 729, 1194
FbaI TGATCA 2 cut(s) 1912, 1956
FokI GGATG 7 cut(s) 353, 731, 961, 1174, 1494, 1843, 1976
FriOI GRGCYC 3 cut(s) 72, 336, 366
FspBI CTAG 2 cut(s) 560, 762
FspI TGCGCA 1 cut(s) 605
GlaI GCGC 3 cut(s) 210, 236, 605
GsaI CCCAGC 1 cut(s) 1647
GsuI CTGGAG 1 cut(s) 1004
HaeIII GGCC 5 cut(s) 128, 320, 375, 1400, 1648
HhaI GCGC 3 cut(s) 211, 237, 606
Hin1II CATG 7 cut(s) 571, 848, 1243, 1835, 1963, 1982, 2100
Hin6I GCGC 3 cut(s) 209, 235, 604
HinP1I GCGC 3 cut(s) 209, 235, 604
HincII GTYRAC 3 cut(s) 406, 759, 2067
HindII GTYRAC 3 cut(s) 406, 759, 2067
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 9 cut(s) 28, 40, 188, 509, 745, 1172, 1304, 1343, 1631
HpaI GTTAAC 1 cut(s) 2067
HphI GGTGA 9 cut(s) 49, 463, 754, 909, 1163, 1433, 1748, 1763, 2003
Hpy166II GTNNAC 4 cut(s) 32, 406, 759, 2067
Hpy188I TCNGA 9 cut(s) 67, 114, 298, 343, 433, 683, 1008, 1147, 1285
Hpy188III TCNNGA 5 cut(s) 14, 104, 1366, 1393, 1832
Hpy8I GTNNAC 4 cut(s) 32, 406, 759, 2067
Hpy99I CGWCG 4 cut(s) 59, 398, 401, 404
HpyAV CCTTC 8 cut(s) 88, 578, 585, 664, 1099, 1142, 1280, 1517
HpyCH4III ACNGT 7 cut(s) 547, 783, 802, 960, 1736, 1875, 1890
HpyCH4IV ACGT 3 cut(s) 491, 736, 2069
HpyF3I CTNAG 4 cut(s) 49, 513, 975, 1799
HpySE526I ACGT 3 cut(s) 491, 736, 2069
Hsp92II CATG 7 cut(s) 571, 848, 1243, 1835, 1963, 1982, 2100
HspAI GCGC 3 cut(s) 209, 235, 604
KroI GCCGGC 1 cut(s) 563
KroNI GCCGGC 1 cut(s) 565
Ksp22I TGATCA 2 cut(s) 1912, 1956
KspAI GTTAAC 1 cut(s) 2067
KspI CCGCGG 1 cut(s) 373
LmnI GCTCC 6 cut(s) 67, 75, 344, 378, 2032, 2064
Lsp1109I GCAGC 6 cut(s) 47, 1010, 1078, 1255, 1402, 1567
LweI GCATC 6 cut(s) 390, 463, 709, 1219, 1730, 1954
MaeI CTAG 2 cut(s) 560, 762
MaeII ACGT 3 cut(s) 491, 736, 2069
MaeIII GTNAC 7 cut(s) 1486, 1511, 1867, 1875, 1890, 1946, 2009
MfeI CAATTG 1 cut(s) 812
MflI RGATCY 2 cut(s) 1115, 1608
MhlI GDGCHC 3 cut(s) 72, 336, 366
MlsI TGGCCA 1 cut(s) 1400
MluNI TGGCCA 1 cut(s) 1400
MlyI GAGTC 3 cut(s) 37, 49, 182
MmeI TCCRAC 1 cut(s) 1684
Mox20I TGGCCA 1 cut(s) 1400
Mph1103I ATGCAT 1 cut(s) 1234
MroNI GCCGGC 1 cut(s) 563
MroXI GAANNNNTTC 1 cut(s) 1375
MscI TGGCCA 1 cut(s) 1400
MseI TTAA 6 cut(s) 519, 597, 1428, 1548, 1899, 2066
Msp20I TGGCCA 1 cut(s) 1400
MspA1I CMGCKG 3 cut(s) 372, 1598, 1643
MspCI CTTAAG 1 cut(s) 518
MspR9I CCNGG 4 cut(s) 317, 750, 751, 1851
MunI CAATTG 1 cut(s) 812
MvaI CCWGG 1 cut(s) 1851
MvnI CGCG 3 cut(s) 209, 237, 372
NaeI GCCGGC 1 cut(s) 565
NciI CCSGG 3 cut(s) 317, 750, 751
NdeI CATATG 2 cut(s) 729, 1194
NgoMIV GCCGGC 1 cut(s) 563
NheI GCTAGC 1 cut(s) 559
NlaIII CATG 7 cut(s) 571, 848, 1243, 1835, 1963, 1982, 2100
NlaIV GGNNCC 7 cut(s) 878, 1182, 1298, 1391, 1610, 1759, 2060
NmeAIII GCCGAG 1 cut(s) 580
NmuCI GTSAC 3 cut(s) 1486, 1875, 2009
NsbI TGCGCA 1 cut(s) 605
NsiI ATGCAT 1 cut(s) 1234
NspI RCATGY 1 cut(s) 571
PaeR7I CTCGAG 1 cut(s) 329
PagI TCATGA 1 cut(s) 1831
PaqCI CACCTGC 1 cut(s) 1409
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 1375
PfeI GAWTC 6 cut(s) 509, 745, 1172, 1304, 1343, 1631
PinAI ACCGGT 1 cut(s) 34
PleI GAGTC 3 cut(s) 36, 48, 182
PpsI GAGTC 3 cut(s) 36, 48, 182
Ppu21I YACGTR 1 cut(s) 737
Psp124BI GAGCTC 2 cut(s) 72, 336
Psp6I CCWGG 1 cut(s) 1849
PspEI GGTNACC 1 cut(s) 2009
PspFI CCCAGC 1 cut(s) 1643
PspGI CCWGG 1 cut(s) 1849
PspN4I GGNNCC 7 cut(s) 878, 1182, 1298, 1391, 1610, 1759, 2060
PspPI GGNCC 5 cut(s) 136, 319, 626, 1637, 1646
PspXI VCTCGAGB 1 cut(s) 329
PstI CTGCAG 3 cut(s) 1030, 1039, 1420
PstNI CAGNNNCTG 1 cut(s) 1034
PsuI RGATCY 2 cut(s) 1115, 1608
PvuII CAGCTG 2 cut(s) 1598, 1643
RsaI GTAC 3 cut(s) 899, 1565, 1809
RsaNI GTAC 3 cut(s) 898, 1564, 1808
SacI GAGCTC 2 cut(s) 72, 336
SacII CCGCGG 1 cut(s) 373
SaqAI TTAA 6 cut(s) 519, 597, 1428, 1548, 1899, 2066
Sau96I GGNCC 5 cut(s) 136, 319, 626, 1637, 1646
ScaI AGTACT 1 cut(s) 1565
SchI GAGTC 3 cut(s) 37, 49, 182
ScrFI CCNGG 4 cut(s) 317, 750, 751, 1851
SduI GDGCHC 3 cut(s) 72, 336, 366
SfaNI GCATC 6 cut(s) 390, 463, 709, 1219, 1730, 1954
SfcI CTRYAG 3 cut(s) 1026, 1035, 1416
Sfr274I CTCGAG 1 cut(s) 329
Sfr303I CCGCGG 1 cut(s) 373
SgrAI CRCCGGYG 2 cut(s) 34, 500
SgrBI CCGCGG 1 cut(s) 373
SinI GGWCC 3 cut(s) 136, 626, 1637
SlaI CTCGAG 1 cut(s) 329
SmaI CCCGGG 1 cut(s) 751
SmlI CTYRAG 4 cut(s) 248, 329, 356, 518
SmoI CTYRAG 4 cut(s) 248, 329, 356, 518
SspI AATATT 1 cut(s) 1409
SspMI CTAG 2 cut(s) 560, 762
SstI GAGCTC 2 cut(s) 72, 336
StyD4I CCNGG 4 cut(s) 315, 748, 749, 1849
StyI CCWWGG 2 cut(s) 123, 144
TaaI ACNGT 7 cut(s) 547, 783, 802, 960, 1736, 1875, 1890
TaiI ACGT 3 cut(s) 494, 739, 2072
TaqI TCGA 6 cut(s) 105, 330, 348, 646, 1210, 1991
TaqII GACCGA 1 cut(s) 1067
TatI WGTACW 1 cut(s) 1563
TauI GCSGC 7 cut(s) 200, 203, 206, 209, 284, 375, 1758
TfiI GAWTC 6 cut(s) 509, 745, 1172, 1304, 1343, 1631
Tru1I TTAA 6 cut(s) 519, 597, 1428, 1548, 1899, 2066
Tru9I TTAA 6 cut(s) 519, 597, 1428, 1548, 1899, 2066
TscAI CASTG 5 cut(s) 329, 424, 944, 1039, 1878
TseFI GTSAC 3 cut(s) 1486, 1875, 2009
TseI GCWGC 6 cut(s) 60, 998, 1091, 1243, 1415, 1580
Tsp45I GTSAC 3 cut(s) 1486, 1875, 2009
TspDTI ATGAA 6 cut(s) 70, 597, 1272, 1368, 1820, 1848
TspMI CCCGGG 1 cut(s) 749
TspRI CASTG 5 cut(s) 329, 424, 944, 1039, 1878
Vha464I CTTAAG 1 cut(s) 518
VpaK11BI GGWCC 3 cut(s) 136, 626, 1637
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 2 cut(s) 225, 1553
XceI RCATGY 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 329
XmaI CCCGGG 1 cut(s) 749
XmnI GAANNNNTTC 1 cut(s) 1375
XspI CTAG 2 cut(s) 560, 762
ZrmI AGTACT 1 cut(s) 1565
Zsp2I ATGCAT 1 cut(s) 1234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.