Rh2BG110400

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011992
Physical Location & Seq
Forward (+)
9337740 .. 9343536
5797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG110400.1

Sequence Viewer

Length: 2703 bp
ATGGAAGCAGTTATATGGTTCCGCCAACACAATGCTTCGTACAGAAAGCTCAAAGGATCACCAGAAGCTATATTTCTTCACTGGGAGTGGATGAGCAGACAGTTCTTGGTGTTTGCCGAGTTGCTGGAGACAAGTTCAGCAGCCATTCAGAGCATTTCACATCTAACTGCAGGCACTGCAGATAGACCTTTGACCGAGTGGGAGTTTCAGCCAGCTCATTACTATCAGTTAGCTGCTCATTACTTGAAGGAGAAGAGATCTTCTTTGGACTTTGCAGTTTCTATGTCAGAAGGTGAGATTGATTATAGTGCTGAATCTGTGGCACCCTCATCCCATATGGGTCAGTTTGCTCGATTGATTGAACAAGGAGATGCATTTGTCATGCAGCCCCTTACTGATGAAGAGTATATGCGTTATGCAATTTCTGAAGGAAAAAGGTTCCAAGATTCCTTTGAAATTATTGCTTTACTCAAAAAATCTTGTGAATCTTACAATAATCTAAAAGTCAGGAGAATGGCTTCATTTTGTGGGTTCCAGATGGCCAGAGAATATTATGCTGCAGGTGATTTTAACAACGCCAAACTTCTTTTTGATGACTTTGCAAGTCTATACAGGCAAGAGGGATGGGTCACTTTGCTGTGGGAGGTATTAGGTTACTTGCGTGAAGGTTCAAGGAAACACAGCAAAGTTAAAGAATTTATAGAGTACTCCTTTGAGATGGCTGCACTCCCTATATCAGCTGATACTGGGATCCAGTCTTTTAGATTTGAAGAATCTGGTCCAGCTGGGCCTGCTACCCTCCAACAAAGAGAAACAATACATAAAGAAGTTTTTGGGCTTGTTAGTGAAAAACTGGGGTTGGCATCTACTGAAAACTGTGATGATGTCAAAGTAAGCAGCACCAATCCACTTCACCTTGAAATTGATCTCGTCAGTCCCCTTAGATTGGTACTCCTTGCTTCAGTTGCTTTTCATGAACAAATAATCAAGCCTGGCTCATCCACATTGGTTACACTGTCACTCTTATCACAGTTACCACTTAATTTTGAGATTGATCAATTAGAAGTCCAGTTCAATCAGTCTCATTGTAACTTTGTGATCATGGATGCCCAAAAGCCTCATGTAGCTTCCTCAACTGATGGTCAATCAGGTCACCGAAGAGAGACTGCTCCATCTTTGCGACTTTCTACAAACAAATGGCTCCGGTTAACGTATGACATCAAATCGGATCAAAGTGGAAAGCTTGAATGCATATCTATTATTGCCAAAATGGGACCGCACTTTACTATCTGTTGTAGAGCTGAAAGTCCTGCTTCAATGGATGATTTGCCTCTTTGGAAATTTGAAGACCGTGTGGTTACCTATCCAACCAAGGACCCAGCTCTGGCATTCTTCGGTCAGAGAGCAATTCAAGTTGAAGAACCAGACCCGGAAGTGGATCTTACTTTAGGTGCTTCTGGCCCTGCATTAATTGGAGAGAGCTTCATAGTACCTGTTACTGTCACATCCAAGGGACGTGAGGTTAATTCGGGTGAGTTGAAGATCAATCTGGTGGATGTAAGGGGAGGTGGTTTGTTTAGTCCAAGGGATGCAGAACTATCTGCGGATAGTCATCATGTTGAACTTCTTGGTATATCTGGATCAGAAGGAGAAGATGAATCCCAATTGGATACCGATGAAATTAAGAAAATTCAAAAGTCTTTTGGATTGGTTTCAGTTCCTAATCTCAAAAGTGGAGACTCATGGTCATGCAAATTGGAAATCAAGTGGTATAGACCCAAACCAGTTATGCTGTATGTATCACTGGGTTATTCTCCAGATAATAATGGATCAAACACACAAAAAGTTAATGTGCACAAGAGCTTGCAGATTGAAGGAAAGAATGCAATCTCAATTAGCCATCGCCTTATGCTTCCTTTCCGCAGGTACCCGTTGTTGCTTTCTAGGACAAAATCAGTTCCTGATTCTGATCAGTCAGTGTCGATTCCTTTAAACGAAACAAGTGTACTCATTGTTAGTGCTACGAATTGCTCAGAGGTGCCACTTCAGTTACTATCATTATCTATTGAAAGAGATAATGATGACACTGAAAGGTCATGTTCTTTGCATGGTGGTGAGGACCTTTTAAACCCTGCCCTTCTTGTTCCAGGAGAGAAGTTTAAGAAGGTGTACACTGTCACTTCTGAGATGAATTCTTCAAAGCTTATATTAGGTAATGTGTGTCTTAGATGGAGAAGGAATTCTGGGACTAGAGAACAAGCTGGTTCTGCGGCTCCAGTTATGACTAACCACAAACTTCCTGATGTGAATCTGGAATCATCACCTCTTGTCGTGAGTTTGGAGTGTCCTCCTTACGCAATCCTTGGCGATCCTTTCACATATTTTGTTAAAATTCAGAACCAAACAGAACTGCTTCAAGAGGCCAAAATTTTCCTGGCAGATGCTCAAAGTTTTGTAATATCTGGGTCTCACAGTGACACGGTATATATTCTTCCAAAATCTGAGCACATCATCAGTTACAAGCTTGTCCCGCTTTCCTCAGGGGAACAACAGCTACCCAGATTCACTTTAACCGCAGTTAGATATTCCACTGGGTTTCAGCCTTCAATTGCTGCATCTACTATTTTTGTTTTCCCCTCTCAGCCTCATTTTAAGATGGTTGCTGTGGGAGATGACAGGAAGGAATCAGTGGTGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

900

Amino Acids

100.32

Weight (kDa)

5.52

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Foie-gras_1 PF11817 2 - 242 6e-55 Foie gras liver health family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65950
fragaria_vesca FvH4_1g10000
malus_domestica MD15G1228100.v1.1
prunus_persica Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1
pyrus_communis pycom15g20290
rosa_chinensis RchiOBHm_Chr2g0096791
rosa_laevigata RLG00000016670 RLG00000023097
rosa_multiflora Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031
rosa_roxburghii Rroxscaffold_2G00145310
rosa_rugosa Rorug02G0060900
rosa_samantha Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700
rosa_wichuraiana Rw2G008370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
Acc36I ACCTGC 2 cut(s) 551, 1914
Acc65I GGTACC 1 cut(s) 1926
AccB1I GGYRCC 3 cut(s) 322, 1926, 2038
AciI CCGC 7 cut(s) 22, 1277, 1604, 1921, 2270, 2531, 2574
AclWI GGATC 8 cut(s) 64, 745, 758, 1236, 1446, 1648, 1837, 2363
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 7 cut(s) 695, 1340, 1689, 2191, 2239, 2391, 2427
AcuI CTGAAG 3 cut(s) 447, 945, 2030
AfaI GTAC 7 cut(s) 41, 707, 951, 1491, 1928, 2007, 2171
AfiI CCNNNNNNNGG 3 cut(s) 946, 1384, 1435
AhdI GACNNNNNGTC 1 cut(s) 1744
AjiI CACGTC 1 cut(s) 1517
AjnI CCWGG 3 cut(s) 991, 2146, 2433
Alw21I GWGCWC 2 cut(s) 1857, 2508
Alw26I GTCTC 5 cut(s) 122, 1086, 1157, 1731, 2472
Alw44I GTGCAC 1 cut(s) 1853
AlwI GGATC 8 cut(s) 64, 745, 758, 1236, 1446, 1648, 1837, 2363
AlwNI CAGNNNCTG 2 cut(s) 176, 1961
AoxI GGCC 4 cut(s) 540, 788, 1459, 2421
ApaLI GTGCAC 1 cut(s) 1853
ApeKI GCWGC 7 cut(s) 140, 233, 385, 557, 722, 897, 2612
ApoI RAATTY 7 cut(s) 695, 1340, 1689, 2191, 2239, 2391, 2427
AseI ATTAAT 1 cut(s) 1469
Asp700I GAANNNNTTC 3 cut(s) 517, 2239, 2412
Asp718I GGTACC 1 cut(s) 1926
AspS9I GGNCC 6 cut(s) 779, 788, 1274, 1375, 1460, 2119
AsuC2I CCSGG 1 cut(s) 1430
AsuHPI GGTGA 8 cut(s) 51, 305, 575, 905, 1145, 1544, 2126, 2313
AvaII GGWCC 4 cut(s) 779, 1274, 1375, 2119
AxyI CCTNAGG 1 cut(s) 2539
BaeGI GKGCMC 1 cut(s) 1857
BalI TGGCCA 1 cut(s) 542
BamHI GGATCC 1 cut(s) 750
BanI GGYRCC 3 cut(s) 322, 1926, 2038
BarI GAAGNNNNNNTAC 2 cut(s) 2475, 2507
BbsI GAAGAC 1 cut(s) 1353
Bbv12I GWGCWC 2 cut(s) 1857, 2508
BbvI GCAGC 7 cut(s) 152, 220, 397, 544, 709, 909, 2599
BccI CCATC 8 cut(s) 532, 618, 712, 1133, 1180, 1908, 2223, 2650
BciT130I CCWGG 3 cut(s) 993, 2148, 2435
BciVI GTATCC 1 cut(s) 1663
BclI TGATCA 3 cut(s) 1054, 1098, 1969
BcnI CCSGG 1 cut(s) 1430
BcoDI GTCTC 5 cut(s) 122, 1086, 1157, 1731, 2472
BfaI CTAG 2 cut(s) 1944, 2250
BfmI CTRYAG 3 cut(s) 168, 177, 558
BfuAI ACCTGC 2 cut(s) 551, 1914
BfuI GTATCC 1 cut(s) 1663
BglII AGATCT 1 cut(s) 257
BisI GCNGC 8 cut(s) 141, 234, 386, 558, 723, 898, 2271, 2613
BlsI GCNGC 8 cut(s) 142, 235, 387, 559, 724, 899, 2272, 2614
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 4 cut(s) 993, 1430, 2148, 2435
Bme18I GGWCC 4 cut(s) 779, 1274, 1375, 2119
BmeRI GACNNNNNGTC 1 cut(s) 1744
BmgBI CACGTC 1 cut(s) 1517
BmgT120I GGNCC 6 cut(s) 779, 788, 1274, 1375, 1460, 2119
BmrFI CCNGG 4 cut(s) 993, 1430, 2148, 2435
BmrI ACTGGG 5 cut(s) 91, 756, 863, 1814, 2601
BmsI GCATC 6 cut(s) 361, 872, 1096, 1579, 2431, 2624
BmuI ACTGGG 5 cut(s) 91, 756, 863, 1814, 2601
BpiI GAAGAC 1 cut(s) 1353
BpmI CTGGAG 3 cut(s) 146, 1800, 2259
BpuMI CCSGG 1 cut(s) 1430
BsaBI GATNNNNATC 3 cut(s) 1611, 1968, 2307
BsaI GGTCTC 1 cut(s) 2472
BsaJI CCNNGG 4 cut(s) 1371, 1509, 1583, 2362
BsaWI WCCGGW 1 cut(s) 1203
Bsc4I CCNNNNNNNGG 3 cut(s) 946, 1384, 1435
Bse1I ACTGG 9 cut(s) 86, 751, 754, 858, 1069, 1784, 1809, 2276, 2596
Bse21I CCTNAGG 1 cut(s) 2539
Bse8I GATNNNNATC 3 cut(s) 1611, 1968, 2307
BseBI CCWGG 3 cut(s) 993, 2148, 2435
BseDI CCNNGG 4 cut(s) 1371, 1509, 1583, 2362
BseGI GGATG 9 cut(s) 96, 329, 629, 998, 1111, 1327, 1505, 1561, 1594
BseJI GATNNNNATC 3 cut(s) 1611, 1968, 2307
BseLI CCNNNNNNNGG 3 cut(s) 946, 1384, 1435
BseMII CTCAG 5 cut(s) 2046, 2175, 2493, 2553, 2654
BseNI ACTGG 9 cut(s) 86, 751, 754, 858, 1069, 1784, 1809, 2276, 2596
BseSI GKGCMC 1 cut(s) 1857
BseXI GCAGC 7 cut(s) 152, 220, 397, 544, 709, 909, 2599
BseYI CCCAGC 2 cut(s) 785, 1378
BsgI GTGCAG 1 cut(s) 708
BshFI GGCC 4 cut(s) 542, 790, 1461, 2423
BshNI GGYRCC 3 cut(s) 322, 1926, 2038
BsiHKAI GWGCWC 2 cut(s) 1857, 2508
BsiSI CCGG 2 cut(s) 1204, 1430
BslFI GGGAC 5 cut(s) 921, 1287, 1527, 2260, 2513
BslI CCNNNNNNNGG 3 cut(s) 946, 1384, 1435
BsmAI GTCTC 5 cut(s) 122, 1086, 1157, 1731, 2472
BsmFI GGGAC 5 cut(s) 921, 1287, 1527, 2260, 2513
BsmI GAATGC 3 cut(s) 1253, 1388, 1888
BsnI GGCC 4 cut(s) 542, 790, 1461, 2423
Bso31I GGTCTC 1 cut(s) 2472
Bsp1286I GDGCHC 2 cut(s) 1857, 2508
Bsp1407I TGTACA 1 cut(s) 2169
BspACI CCGC 7 cut(s) 22, 1277, 1604, 1921, 2270, 2531, 2574
BspANI GGCC 4 cut(s) 542, 790, 1461, 2423
BspCNI CTCAG 5 cut(s) 2045, 2176, 2494, 2552, 2653
BspHI TCATGA 1 cut(s) 973
BspMAI CTGCAG 3 cut(s) 172, 181, 562
BspMI ACCTGC 2 cut(s) 551, 1914
BspPI GGATC 8 cut(s) 64, 745, 758, 1236, 1446, 1648, 1837, 2363
BspT107I GGYRCC 3 cut(s) 322, 1926, 2038
BspTNI GGTCTC 1 cut(s) 2472
BsrGI TGTACA 1 cut(s) 2169
BsrI ACTGG 9 cut(s) 86, 751, 754, 858, 1069, 1784, 1809, 2276, 2596
BssECI CCNNGG 4 cut(s) 1371, 1509, 1583, 2362
BssT1I CCWWGG 4 cut(s) 1371, 1509, 1583, 2362
Bst2UI CCWGG 3 cut(s) 993, 2148, 2435
Bst4CI ACNGT 9 cut(s) 102, 878, 1017, 1032, 1352, 1501, 2176, 2474, 2482
Bst6I CTCTTC 3 cut(s) 248, 396, 1153
BstAPI GCANNNNNTGC 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 2169
BstC8I GCNNGC 4 cut(s) 172, 213, 792, 1865
BstDEI CTNAG 7 cut(s) 941, 2032, 2184, 2225, 2502, 2539, 2640
BstEII GGTNACC 2 cut(s) 1151, 1357
BstF5I GGATG 9 cut(s) 96, 329, 629, 998, 1111, 1327, 1505, 1561, 1594
BstMAI GTCTC 5 cut(s) 122, 1086, 1157, 1731, 2472
BstMWI GCNNNNNNNGC 5 cut(s) 176, 791, 965, 2267, 2530
BstNI CCWGG 3 cut(s) 993, 2148, 2435
BstPI GGTNACC 2 cut(s) 1151, 1357
BstSCI CCNGG 4 cut(s) 991, 1428, 2146, 2433
BstSFI CTRYAG 3 cut(s) 168, 177, 558
BstSLI GKGCMC 1 cut(s) 1857
BstV1I GCAGC 7 cut(s) 152, 220, 397, 544, 709, 909, 2599
BstV2I GAAGAC 1 cut(s) 1353
BstX2I RGATCY 3 cut(s) 257, 750, 1438
BstYI RGATCY 3 cut(s) 257, 750, 1438
Bsu36I CCTNAGG 1 cut(s) 2539
BsuI GTATCC 1 cut(s) 1663
BsuRI GGCC 4 cut(s) 542, 790, 1461, 2423
BtgZI GCGATG 1 cut(s) 1886
BtrI CACGTC 1 cut(s) 1517
BtsCI GGATG 9 cut(s) 96, 329, 629, 998, 1111, 1327, 1505, 1561, 1594
BtsI GCAGTG 1 cut(s) 174
BveI ACCTGC 2 cut(s) 551, 1914
Cac8I GCNNGC 4 cut(s) 172, 213, 792, 1865
CaiI CAGNNNCTG 2 cut(s) 176, 1961
CciI TCATGA 1 cut(s) 973
Cfr13I GGNCC 6 cut(s) 779, 788, 1274, 1375, 1460, 2119
Csp6I GTAC 7 cut(s) 40, 706, 950, 1490, 1927, 2006, 2170
CviAII CATG 9 cut(s) 382, 974, 1102, 1121, 1616, 1743, 1749, 2097, 2108
CviQI GTAC 7 cut(s) 40, 706, 950, 1490, 1927, 2006, 2170
DdeI CTNAG 7 cut(s) 941, 2032, 2184, 2225, 2502, 2539, 2640
DraI TTTAAA 2 cut(s) 1992, 2127
DriI GACNNNNNGTC 1 cut(s) 1744
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 3 cut(s) 248, 396, 1153
Eam1105I GACNNNNNGTC 1 cut(s) 1744
EarI CTCTTC 3 cut(s) 248, 396, 1153
EciI GGCGGA 1 cut(s) 11
Eco130I CCWWGG 4 cut(s) 1371, 1509, 1583, 2362
Eco31I GGTCTC 1 cut(s) 2472
Eco47I GGWCC 4 cut(s) 779, 1274, 1375, 2119
Eco57I CTGAAG 3 cut(s) 447, 945, 2030
Eco81I CCTNAGG 1 cut(s) 2539
Eco91I GGTNACC 2 cut(s) 1151, 1357
EcoO109I RGGNCCY 2 cut(s) 1375, 2119
EcoO65I GGTNACC 2 cut(s) 1151, 1357
EcoRI GAATTC 2 cut(s) 2191, 2239
EcoRII CCWGG 3 cut(s) 991, 2146, 2433
EcoT14I CCWWGG 4 cut(s) 1371, 1509, 1583, 2362
EcoT22I ATGCAT 2 cut(s) 376, 1253
ErhI CCWWGG 4 cut(s) 1371, 1509, 1583, 2362
FaeI CATG 9 cut(s) 385, 977, 1105, 1124, 1619, 1746, 1752, 2100, 2111
FalI AAGNNNNNCTT 4 cut(s) 1297, 1329, 1425, 1457
FaqI GGGAC 5 cut(s) 921, 1287, 1527, 2260, 2513
FatI CATG 9 cut(s) 381, 973, 1101, 1120, 1615, 1742, 1748, 2096, 2107
FauI CCCGC 1 cut(s) 2538
FauNDI CATATG 1 cut(s) 336
FbaI TGATCA 3 cut(s) 1054, 1098, 1969
Fnu4HI GCNGC 8 cut(s) 141, 234, 386, 558, 723, 898, 2271, 2613
FokI GGATG 9 cut(s) 103, 316, 636, 985, 1118, 1334, 1492, 1568, 1601
Fsp4HI GCNGC 8 cut(s) 141, 234, 386, 558, 723, 898, 2271, 2613
FspBI CTAG 2 cut(s) 1944, 2250
GluI GCNGC 8 cut(s) 141, 234, 386, 558, 723, 898, 2271, 2613
GsaI CCCAGC 2 cut(s) 789, 1382
GsuI CTGGAG 3 cut(s) 146, 1800, 2259
HaeIII GGCC 4 cut(s) 542, 790, 1461, 2423
HapII CCGG 2 cut(s) 1204, 1430
Hin1II CATG 9 cut(s) 385, 977, 1105, 1124, 1619, 1746, 1752, 2100, 2111
HincII GTYRAC 1 cut(s) 1209
HindII GTYRAC 1 cut(s) 1209
HindIII AAGCTT 3 cut(s) 1241, 2201, 2522
HpaI GTTAAC 1 cut(s) 1209
HpaII CCGG 2 cut(s) 1204, 1430
HphI GGTGA 8 cut(s) 51, 305, 575, 905, 1145, 1544, 2126, 2313
Hpy166II GTNNAC 5 cut(s) 1209, 1855, 2006, 2170, 2172
Hpy8I GTNNAC 5 cut(s) 1209, 1855, 2006, 2170, 2172
HpyCH4III ACNGT 9 cut(s) 102, 878, 1017, 1032, 1352, 1501, 2176, 2474, 2482
HpyCH4IV ACGT 2 cut(s) 1211, 1516
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 791, 965, 2267, 2530
HpyF3I CTNAG 7 cut(s) 941, 2032, 2184, 2225, 2502, 2539, 2640
HpySE526I ACGT 2 cut(s) 1211, 1516
Hsp92II CATG 9 cut(s) 385, 977, 1105, 1124, 1619, 1746, 1752, 2100, 2111
KpnI GGTACC 1 cut(s) 1930
Ksp22I TGATCA 3 cut(s) 1054, 1098, 1969
KspAI GTTAAC 1 cut(s) 1209
LmnI GCTCC 3 cut(s) 1174, 1206, 2278
Lsp1109I GCAGC 7 cut(s) 152, 220, 397, 544, 709, 909, 2599
LweI GCATC 6 cut(s) 361, 872, 1096, 1579, 2431, 2624
MaeI CTAG 2 cut(s) 1944, 2250
MaeII ACGT 2 cut(s) 1211, 1516
MfeI CAATTG 2 cut(s) 1664, 2607
MflI RGATCY 3 cut(s) 257, 750, 1438
MhlI GDGCHC 2 cut(s) 1857, 2508
MlsI TGGCCA 1 cut(s) 542
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 1 cut(s) 1733
MmeI TCCRAC 2 cut(s) 826, 1391
Mox20I TGGCCA 1 cut(s) 542
Mph1103I ATGCAT 2 cut(s) 376, 1253
MroXI GAANNNNTTC 3 cut(s) 517, 2239, 2412
MscI TGGCCA 1 cut(s) 542
MslI CAYNNNNRTG 2 cut(s) 1747, 2112
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 2 cut(s) 740, 785
MspI CCGG 2 cut(s) 1204, 1430
MspR9I CCNGG 4 cut(s) 993, 1430, 2148, 2435
MunI CAATTG 2 cut(s) 1664, 2607
Mva1269I GAATGC 3 cut(s) 1253, 1388, 1888
MvaI CCWGG 3 cut(s) 993, 2148, 2435
MwoI GCNNNNNNNGC 5 cut(s) 176, 791, 965, 2267, 2530
NciI CCSGG 1 cut(s) 1430
NdeI CATATG 1 cut(s) 336
NlaIII CATG 9 cut(s) 385, 977, 1105, 1124, 1619, 1746, 1752, 2100, 2111
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 6 cut(s) 628, 1017, 1151, 1501, 2176, 2474
NsiI ATGCAT 2 cut(s) 376, 1253
PagI TCATGA 1 cut(s) 973
PaqCI CACCTGC 1 cut(s) 551
PctI GAATGC 3 cut(s) 1253, 1388, 1888
PdmI GAANNNNTTC 3 cut(s) 517, 2239, 2412
PfoI TCCNGGA 1 cut(s) 2146
PkrI GCNGC 8 cut(s) 142, 235, 387, 559, 724, 899, 2272, 2614
PleI GAGTC 1 cut(s) 1733
PpsI GAGTC 1 cut(s) 1733
PpuMI RGGWCCY 2 cut(s) 1375, 2119
PshBI ATTAAT 1 cut(s) 1469
Psp5II RGGWCCY 2 cut(s) 1375, 2119
Psp6I CCWGG 3 cut(s) 991, 2146, 2433
PspEI GGTNACC 2 cut(s) 1151, 1357
PspFI CCCAGC 2 cut(s) 785, 1378
PspGI CCWGG 3 cut(s) 991, 2146, 2433
PspPI GGNCC 6 cut(s) 779, 788, 1274, 1375, 1460, 2119
PspPPI RGGWCCY 2 cut(s) 1375, 2119
PsrI GAACNNNNNNTAC 2 cut(s) 2538, 2570
PstI CTGCAG 3 cut(s) 172, 181, 562
PstNI CAGNNNCTG 2 cut(s) 176, 1961
PsuI RGATCY 3 cut(s) 257, 750, 1438
PvuII CAGCTG 2 cut(s) 740, 785
RsaI GTAC 7 cut(s) 41, 707, 951, 1491, 1928, 2007, 2171
RsaNI GTAC 7 cut(s) 40, 706, 950, 1490, 1927, 2006, 2170
RseI CAYNNNNRTG 2 cut(s) 1747, 2112
SatI GCNGC 8 cut(s) 141, 234, 386, 558, 723, 898, 2271, 2613
Sau96I GGNCC 6 cut(s) 779, 788, 1274, 1375, 1460, 2119
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 1 cut(s) 1733
ScrFI CCNGG 4 cut(s) 993, 1430, 2148, 2435
SduI GDGCHC 2 cut(s) 1857, 2508
SfaNI GCATC 6 cut(s) 361, 872, 1096, 1579, 2431, 2624
SfcI CTRYAG 3 cut(s) 168, 177, 558
SinI GGWCC 4 cut(s) 779, 1274, 1375, 2119
SmiMI CAYNNNNRTG 2 cut(s) 1747, 2112
SsiI CCGC 7 cut(s) 22, 1277, 1604, 1921, 2270, 2531, 2574
SspI AATATT 1 cut(s) 551
SspMI CTAG 2 cut(s) 1944, 2250
StyD4I CCNGG 4 cut(s) 991, 1428, 2146, 2433
StyI CCWWGG 4 cut(s) 1371, 1509, 1583, 2362
TaaI ACNGT 9 cut(s) 102, 878, 1017, 1032, 1352, 1501, 2176, 2474, 2482
TaiI ACGT 2 cut(s) 1214, 1519
TaqI TCGA 2 cut(s) 352, 1982
TaqII GACCGA 2 cut(s) 209, 1385
TatI WGTACW 3 cut(s) 705, 2005, 2169
TauI GCSGC 1 cut(s) 2273
TseFI GTSAC 6 cut(s) 628, 1017, 1151, 1501, 2176, 2474
TseI GCWGC 7 cut(s) 140, 233, 385, 557, 722, 897, 2612
Tsp45I GTSAC 6 cut(s) 628, 1017, 1151, 1501, 2176, 2474
TspDTI ATGAA 8 cut(s) 414, 510, 962, 990, 1474, 1671, 1692, 2204
VneI GTGCAC 1 cut(s) 1853
VpaK11BI GGWCC 4 cut(s) 779, 1274, 1375, 2119
VspI ATTAAT 1 cut(s) 1469
XapI RAATTY 7 cut(s) 695, 1340, 1689, 2191, 2239, 2391, 2427
XcmI CCANNNNNNNNNTGG 1 cut(s) 2431
XmnI GAANNNNTTC 3 cut(s) 517, 2239, 2412
XspI CTAG 2 cut(s) 1944, 2250
ZrmI AGTACT 1 cut(s) 707
Zsp2I ATGCAT 2 cut(s) 376, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.