trafficking protein particle complex
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65950 |
| fragaria_vesca | FvH4_1g10000 |
| malus_domestica | MD15G1228100.v1.1 |
| prunus_persica | Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1 |
| pyrus_communis | pycom15g20290 |
| rosa_chinensis | RchiOBHm_Chr2g0096791 |
| rosa_laevigata | RLG00000016670 RLG00000023097 |
| rosa_multiflora | Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00145310 |
| rosa_rugosa | Rorug02G0060900 |
| rosa_samantha | Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700 |
| rosa_wichuraiana | Rw2G008370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1406 |
| Acc16I | TGCGCA | 1 cut(s) | 602 |
| Acc36I | ACCTGC | 2 cut(s) | 1406, 2769 |
| Acc65I | GGTACC | 1 cut(s) | 2781 |
| AccB1I | GGYRCC | 4 cut(s) | 1177, 1754, 2781, 2893 |
| AccII | CGCG | 3 cut(s) | 206, 234, 369 |
| AclWI | GGATC | 9 cut(s) | 303, 919, 1600, 1613, 2091, 2301, 2503, 2692, 3218 |
| AcoI | YGGCCR | 2 cut(s) | 370, 1395 |
| AcsI | RAATTY | 8 cut(s) | 222, 1550, 2195, 2544, 3046, 3094, 3246, 3282 |
| AcuI | CTGAAG | 6 cut(s) | 438, 450, 483, 1302, 1800, 2885 |
| AfaI | GTAC | 7 cut(s) | 896, 1562, 1806, 2346, 2783, 2862, 3026 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 145, 218, 297, 777, 1801, 2239, 2290 |
| AflII | CTTAAG | 1 cut(s) | 515 |
| AgeI | ACCGGT | 1 cut(s) | 34 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1995, 2599 |
| AjnI | CCWGG | 3 cut(s) | 1846, 3001, 3288 |
| Alw21I | GWGCWC | 4 cut(s) | 72, 333, 2712, 3363 |
| Alw44I | GTGCAC | 1 cut(s) | 2708 |
| AlwI | GGATC | 9 cut(s) | 303, 919, 1600, 1613, 2091, 2301, 2503, 2692, 3218 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1031, 2816 |
| Ama87I | CYCGRG | 2 cut(s) | 326, 746 |
| AoxI | GGCC | 7 cut(s) | 126, 315, 370, 1395, 1643, 2314, 3276 |
| ApaLI | GTGCAC | 1 cut(s) | 2708 |
| ApeKI | GCWGC | 7 cut(s) | 60, 995, 1088, 1240, 1412, 1577, 3467 |
| ApoI | RAATTY | 8 cut(s) | 222, 1550, 2195, 2544, 3046, 3094, 3246, 3282 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 375, 407 |
| AseI | ATTAAT | 1 cut(s) | 2324 |
| AsiGI | ACCGGT | 1 cut(s) | 34 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1372, 3094, 3267 |
| Asp718I | GGTACC | 1 cut(s) | 2781 |
| AspLEI | GCGC | 3 cut(s) | 208, 234, 603 |
| AspS9I | GGNCC | 9 cut(s) | 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974 |
| AsuC2I | CCSGG | 4 cut(s) | 314, 747, 748, 2285 |
| AsuNHI | GCTAGC | 1 cut(s) | 556 |
| AvaI | CYCGRG | 2 cut(s) | 326, 746 |
| AvaII | GGWCC | 6 cut(s) | 136, 623, 1634, 2129, 2230, 2974 |
| AxyI | CCTNAGG | 1 cut(s) | 3394 |
| BaeGI | GKGCMC | 1 cut(s) | 2712 |
| BalI | TGGCCA | 1 cut(s) | 1397 |
| BamHI | GGATCC | 1 cut(s) | 1605 |
| BanI | GGYRCC | 4 cut(s) | 1177, 1754, 2781, 2893 |
| BanII | GRGCYC | 3 cut(s) | 72, 333, 363 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3330, 3362 |
| BbsI | GAAGAC | 1 cut(s) | 2208 |
| Bbv12I | GWGCWC | 4 cut(s) | 72, 333, 2712, 3363 |
| BbvI | GCAGC | 7 cut(s) | 47, 1007, 1075, 1252, 1399, 1564, 3454 |
| BccI | CCATC | 8 cut(s) | 1387, 1473, 1567, 1988, 2035, 2763, 3078, 3505 |
| BceAI | ACGGC | 1 cut(s) | 254 |
| BciT130I | CCWGG | 3 cut(s) | 1848, 3003, 3290 |
| BciVI | GTATCC | 1 cut(s) | 2518 |
| BclI | TGATCA | 3 cut(s) | 1909, 1953, 2824 |
| BcnI | CCSGG | 4 cut(s) | 314, 747, 748, 2285 |
| BfaI | CTAG | 4 cut(s) | 557, 759, 2799, 3105 |
| BfmI | CTRYAG | 3 cut(s) | 1023, 1032, 1413 |
| BfrI | CTTAAG | 1 cut(s) | 515 |
| BfuAI | ACCTGC | 2 cut(s) | 1406, 2769 |
| BfuI | GTATCC | 1 cut(s) | 2518 |
| BglII | AGATCT | 1 cut(s) | 1112 |
| BmcAI | AGTACT | 1 cut(s) | 1562 |
| Bme1390I | CCNGG | 7 cut(s) | 314, 747, 748, 1848, 2285, 3003, 3290 |
| Bme18I | GGWCC | 6 cut(s) | 136, 623, 1634, 2129, 2230, 2974 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1995, 2599 |
| BmeT110I | CYCGRG | 2 cut(s) | 326, 746 |
| BmgT120I | GGNCC | 9 cut(s) | 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974 |
| BmrFI | CCNGG | 7 cut(s) | 314, 747, 748, 1848, 2285, 3003, 3290 |
| BmrI | ACTGGG | 7 cut(s) | 313, 697, 946, 1611, 1718, 2669, 3456 |
| BmtI | GCTAGC | 1 cut(s) | 560 |
| BmuI | ACTGGG | 7 cut(s) | 313, 697, 946, 1611, 1718, 2669, 3456 |
| BpiI | GAAGAC | 1 cut(s) | 2208 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 59, 91, 320, 352 |
| BpmI | CTGGAG | 3 cut(s) | 1001, 2655, 3114 |
| BpuEI | CTTGAG | 2 cut(s) | 230, 338 |
| BpuMI | CCSGG | 4 cut(s) | 314, 747, 748, 2285 |
| BsaAI | YACGTR | 1 cut(s) | 734 |
| BsaBI | GATNNNNATC | 4 cut(s) | 720, 2466, 2823, 3162 |
| BsaI | GGTCTC | 4 cut(s) | 52, 154, 307, 3327 |
| BsaWI | WCCGGW | 2 cut(s) | 34, 2058 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 395, 425 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 145, 218, 297, 777, 1801, 2239, 2290 |
| Bse118I | RCCGGY | 3 cut(s) | 34, 497, 560 |
| Bse21I | CCTNAGG | 1 cut(s) | 3394 |
| Bse3DI | GCAATG | 1 cut(s) | 1452 |
| Bse8I | GATNNNNATC | 4 cut(s) | 720, 2466, 2823, 3162 |
| BseBI | CCWGG | 3 cut(s) | 1848, 3003, 3290 |
| BseJI | GATNNNNATC | 4 cut(s) | 720, 2466, 2823, 3162 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 145, 218, 297, 777, 1801, 2239, 2290 |
| BseMI | GCAATG | 1 cut(s) | 1452 |
| BseMII | CTCAG | 8 cut(s) | 63, 524, 963, 2901, 3030, 3348, 3408, 3509 |
| BseRI | GAGGAG | 2 cut(s) | 201, 280 |
| BseSI | GKGCMC | 1 cut(s) | 2712 |
| BseX3I | CGGCCG | 1 cut(s) | 370 |
| BseXI | GCAGC | 7 cut(s) | 47, 1007, 1075, 1252, 1399, 1564, 3454 |
| BseYI | CCCAGC | 2 cut(s) | 1640, 2233 |
| BsgI | GTGCAG | 1 cut(s) | 1563 |
| Bsh1236I | CGCG | 3 cut(s) | 206, 234, 369 |
| Bsh1285I | CGRYCG | 1 cut(s) | 373 |
| BshFI | GGCC | 7 cut(s) | 128, 317, 372, 1397, 1645, 2316, 3278 |
| BshNI | GGYRCC | 4 cut(s) | 1177, 1754, 2781, 2893 |
| BshTI | ACCGGT | 1 cut(s) | 34 |
| BsiEI | CGRYCG | 1 cut(s) | 373 |
| BsiHKAI | GWGCWC | 4 cut(s) | 72, 333, 2712, 3363 |
| BsiHKCI | CYCGRG | 2 cut(s) | 326, 746 |
| BslFI | GGGAC | 6 cut(s) | 248, 1776, 2142, 2382, 3115, 3368 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 145, 218, 297, 777, 1801, 2239, 2290 |
| BsmBI | CGTCTC | 1 cut(s) | 3519 |
| BsmFI | GGGAC | 6 cut(s) | 248, 1776, 2142, 2382, 3115, 3368 |
| BsmI | GAATGC | 3 cut(s) | 2108, 2243, 2743 |
| BsnI | GGCC | 7 cut(s) | 128, 317, 372, 1397, 1645, 2316, 3278 |
| Bso31I | GGTCTC | 4 cut(s) | 52, 154, 307, 3327 |
| BsoBI | CYCGRG | 2 cut(s) | 326, 746 |
| Bsp1286I | GDGCHC | 5 cut(s) | 72, 333, 363, 2712, 3363 |
| Bsp1407I | TGTACA | 1 cut(s) | 3024 |
| BspANI | GGCC | 7 cut(s) | 128, 317, 372, 1397, 1645, 2316, 3278 |
| BspCNI | CTCAG | 8 cut(s) | 62, 523, 964, 2900, 3031, 3349, 3407, 3508 |
| BspFNI | CGCG | 3 cut(s) | 206, 234, 369 |
| BspHI | TCATGA | 1 cut(s) | 1828 |
| BspMAI | CTGCAG | 3 cut(s) | 1027, 1036, 1417 |
| BspMI | ACCTGC | 2 cut(s) | 1406, 2769 |
| BspOI | GCTAGC | 1 cut(s) | 560 |
| BspPI | GGATC | 9 cut(s) | 303, 919, 1600, 1613, 2091, 2301, 2503, 2692, 3218 |
| BspT107I | GGYRCC | 4 cut(s) | 1177, 1754, 2781, 2893 |
| BspTI | CTTAAG | 1 cut(s) | 515 |
| BspTNI | GGTCTC | 4 cut(s) | 52, 154, 307, 3327 |
| BsrDI | GCAATG | 1 cut(s) | 1452 |
| BsrFI | RCCGGY | 3 cut(s) | 34, 497, 560 |
| BsrGI | TGTACA | 1 cut(s) | 3024 |
| BssAI | RCCGGY | 3 cut(s) | 34, 497, 560 |
| BssT1I | CCWWGG | 6 cut(s) | 123, 144, 2226, 2364, 2438, 3217 |
| Bst2UI | CCWGG | 3 cut(s) | 1848, 3003, 3290 |
| Bst6I | CTCTTC | 6 cut(s) | 159, 608, 676, 1103, 1251, 2008 |
| BstAFI | CTTAAG | 1 cut(s) | 515 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 526, 1031 |
| BstAUI | TGTACA | 1 cut(s) | 3024 |
| BstBAI | YACGTR | 1 cut(s) | 734 |
| BstC8I | GCNNGC | 6 cut(s) | 558, 562, 1027, 1068, 1647, 2720 |
| BstDSI | CCRYGG | 1 cut(s) | 367 |
| BstEII | GGTNACC | 2 cut(s) | 2006, 2212 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 143 |
| BstFNI | CGCG | 3 cut(s) | 206, 234, 369 |
| BstHHI | GCGC | 3 cut(s) | 208, 234, 603 |
| BstMCI | CGRYCG | 1 cut(s) | 373 |
| BstNI | CCWGG | 3 cut(s) | 1848, 3003, 3290 |
| BstNSI | RCATGY | 1 cut(s) | 568 |
| BstPI | GGTNACC | 2 cut(s) | 2006, 2212 |
| BstSCI | CCNGG | 7 cut(s) | 312, 745, 746, 1846, 2283, 3001, 3288 |
| BstSFI | CTRYAG | 3 cut(s) | 1023, 1032, 1413 |
| BstSLI | GKGCMC | 1 cut(s) | 2712 |
| BstUI | CGCG | 3 cut(s) | 206, 234, 369 |
| BstV1I | GCAGC | 7 cut(s) | 47, 1007, 1075, 1252, 1399, 1564, 3454 |
| BstV2I | GAAGAC | 1 cut(s) | 2208 |
| BstX2I | RGATCY | 3 cut(s) | 1112, 1605, 2293 |
| BstYI | RGATCY | 3 cut(s) | 1112, 1605, 2293 |
| BstZI | CGGCCG | 1 cut(s) | 370 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3394 |
| BsuI | GTATCC | 1 cut(s) | 2518 |
| BsuRI | GGCC | 7 cut(s) | 128, 317, 372, 1397, 1645, 2316, 3278 |
| BtgI | CCRYGG | 1 cut(s) | 367 |
| BtgZI | GCGATG | 1 cut(s) | 2741 |
| BtsI | GCAGTG | 1 cut(s) | 1029 |
| BveI | ACCTGC | 2 cut(s) | 1406, 2769 |
| Cac8I | GCNNGC | 6 cut(s) | 558, 562, 1027, 1068, 1647, 2720 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1031, 2816 |
| CciI | TCATGA | 1 cut(s) | 1828 |
| CfoI | GCGC | 3 cut(s) | 208, 234, 603 |
| Cfr10I | RCCGGY | 3 cut(s) | 34, 497, 560 |
| Cfr13I | GGNCC | 9 cut(s) | 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974 |
| Cfr42I | CCGCGG | 1 cut(s) | 370 |
| Cfr9I | CCCGGG | 1 cut(s) | 746 |
| Csp6I | GTAC | 7 cut(s) | 895, 1561, 1805, 2345, 2782, 2861, 3025 |
| CspAI | ACCGGT | 1 cut(s) | 34 |
| CviQI | GTAC | 7 cut(s) | 895, 1561, 1805, 2345, 2782, 2861, 3025 |
| DraI | TTTAAA | 2 cut(s) | 2847, 2982 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1995, 2599 |
| EaeI | YGGCCR | 2 cut(s) | 370, 1395 |
| EagI | CGGCCG | 1 cut(s) | 370 |
| Eam1104I | CTCTTC | 6 cut(s) | 159, 608, 676, 1103, 1251, 2008 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1995, 2599 |
| EarI | CTCTTC | 6 cut(s) | 159, 608, 676, 1103, 1251, 2008 |
| EciI | GGCGGA | 1 cut(s) | 866 |
| Ecl136II | GAGCTC | 2 cut(s) | 70, 331 |
| EclXI | CGGCCG | 1 cut(s) | 370 |
| Eco130I | CCWWGG | 6 cut(s) | 123, 144, 2226, 2364, 2438, 3217 |
| Eco24I | GRGCYC | 3 cut(s) | 72, 333, 363 |
| Eco31I | GGTCTC | 4 cut(s) | 52, 154, 307, 3327 |
| Eco47I | GGWCC | 6 cut(s) | 136, 623, 1634, 2129, 2230, 2974 |
| Eco52I | CGGCCG | 1 cut(s) | 370 |
| Eco53kI | GAGCTC | 2 cut(s) | 70, 331 |
| Eco57I | CTGAAG | 6 cut(s) | 438, 450, 483, 1302, 1800, 2885 |
| Eco81I | CCTNAGG | 1 cut(s) | 3394 |
| Eco88I | CYCGRG | 2 cut(s) | 326, 746 |
| Eco91I | GGTNACC | 2 cut(s) | 2006, 2212 |
| EcoICRI | GAGCTC | 2 cut(s) | 70, 331 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 143 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2230, 2974 |
| EcoO65I | GGTNACC | 2 cut(s) | 2006, 2212 |
| EcoRI | GAATTC | 2 cut(s) | 3046, 3094 |
| EcoRII | CCWGG | 3 cut(s) | 1846, 3001, 3288 |
| EcoT14I | CCWWGG | 6 cut(s) | 123, 144, 2226, 2364, 2438, 3217 |
| EcoT22I | ATGCAT | 2 cut(s) | 1231, 2108 |
| EcoT38I | GRGCYC | 3 cut(s) | 72, 333, 363 |
| ErhI | CCWWGG | 6 cut(s) | 123, 144, 2226, 2364, 2438, 3217 |
| Esp3I | CGTCTC | 1 cut(s) | 3519 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2152, 2184, 2280, 2312 |
| FaqI | GGGAC | 6 cut(s) | 248, 1776, 2142, 2382, 3115, 3368 |
| FauI | CCCGC | 5 cut(s) | 190, 202, 223, 274, 3393 |
| FauNDI | CATATG | 2 cut(s) | 726, 1191 |
| FbaI | TGATCA | 3 cut(s) | 1909, 1953, 2824 |
| FriOI | GRGCYC | 3 cut(s) | 72, 333, 363 |
| FspBI | CTAG | 4 cut(s) | 557, 759, 2799, 3105 |
| FspI | TGCGCA | 1 cut(s) | 602 |
| GlaI | GCGC | 3 cut(s) | 207, 233, 602 |
| GsaI | CCCAGC | 2 cut(s) | 1644, 2237 |
| GsuI | CTGGAG | 3 cut(s) | 1001, 2655, 3114 |
| HaeIII | GGCC | 7 cut(s) | 128, 317, 372, 1397, 1645, 2316, 3278 |
| HhaI | GCGC | 3 cut(s) | 208, 234, 603 |
| Hin6I | GCGC | 3 cut(s) | 206, 232, 601 |
| HinP1I | GCGC | 3 cut(s) | 206, 232, 601 |
| HincII | GTYRAC | 4 cut(s) | 403, 756, 2064, 2704 |
| HindII | GTYRAC | 4 cut(s) | 403, 756, 2064, 2704 |
| HindIII | AAGCTT | 4 cut(s) | 696, 2096, 3056, 3377 |
| HpaI | GTTAAC | 2 cut(s) | 2064, 2704 |
| Hpy166II | GTNNAC | 9 cut(s) | 32, 403, 756, 2064, 2704, 2710, 2861, 3025, 3027 |
| Hpy8I | GTNNAC | 9 cut(s) | 32, 403, 756, 2064, 2704, 2710, 2861, 3025, 3027 |
| Hpy99I | CGWCG | 4 cut(s) | 59, 395, 398, 401 |
| HpyCH4IV | ACGT | 4 cut(s) | 488, 733, 2066, 2706 |
| HpySE526I | ACGT | 4 cut(s) | 488, 733, 2066, 2706 |
| HspAI | GCGC | 3 cut(s) | 206, 232, 601 |
| KpnI | GGTACC | 1 cut(s) | 2785 |
| KroI | GCCGGC | 1 cut(s) | 560 |
| KroNI | GCCGGC | 1 cut(s) | 562 |
| Ksp22I | TGATCA | 3 cut(s) | 1909, 1953, 2824 |
| KspAI | GTTAAC | 2 cut(s) | 2064, 2704 |
| KspI | CCGCGG | 1 cut(s) | 370 |
| LmnI | GCTCC | 7 cut(s) | 67, 75, 341, 375, 2029, 2061, 3133 |
| Lsp1109I | GCAGC | 7 cut(s) | 47, 1007, 1075, 1252, 1399, 1564, 3454 |
| MaeI | CTAG | 4 cut(s) | 557, 759, 2799, 3105 |
| MaeII | ACGT | 4 cut(s) | 488, 733, 2066, 2706 |
| MfeI | CAATTG | 3 cut(s) | 809, 2519, 3462 |
| MflI | RGATCY | 3 cut(s) | 1112, 1605, 2293 |
| MhlI | GDGCHC | 5 cut(s) | 72, 333, 363, 2712, 3363 |
| MlsI | TGGCCA | 1 cut(s) | 1397 |
| MluNI | TGGCCA | 1 cut(s) | 1397 |
| MlyI | GAGTC | 4 cut(s) | 37, 49, 182, 2588 |
| MmeI | TCCRAC | 2 cut(s) | 1681, 2246 |
| Mox20I | TGGCCA | 1 cut(s) | 1397 |
| Mph1103I | ATGCAT | 2 cut(s) | 1231, 2108 |
| MroNI | GCCGGC | 1 cut(s) | 560 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1372, 3094, 3267 |
| MscI | TGGCCA | 1 cut(s) | 1397 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2602, 2967 |
| Msp20I | TGGCCA | 1 cut(s) | 1397 |
| MspA1I | CMGCKG | 3 cut(s) | 369, 1595, 1640 |
| MspCI | CTTAAG | 1 cut(s) | 515 |
| MspR9I | CCNGG | 7 cut(s) | 314, 747, 748, 1848, 2285, 3003, 3290 |
| MunI | CAATTG | 3 cut(s) | 809, 2519, 3462 |
| Mva1269I | GAATGC | 3 cut(s) | 2108, 2243, 2743 |
| MvaI | CCWGG | 3 cut(s) | 1848, 3003, 3290 |
| MvnI | CGCG | 3 cut(s) | 206, 234, 369 |
| NaeI | GCCGGC | 1 cut(s) | 562 |
| NciI | CCSGG | 4 cut(s) | 314, 747, 748, 2285 |
| NdeI | CATATG | 2 cut(s) | 726, 1191 |
| NgoMIV | GCCGGC | 1 cut(s) | 560 |
| NheI | GCTAGC | 1 cut(s) | 556 |
| NmeAIII | GCCGAG | 1 cut(s) | 577 |
| NmuCI | GTSAC | 6 cut(s) | 1483, 1872, 2006, 2356, 3031, 3329 |
| NsbI | TGCGCA | 1 cut(s) | 602 |
| NsiI | ATGCAT | 2 cut(s) | 1231, 2108 |
| NspI | RCATGY | 1 cut(s) | 568 |
| PaeR7I | CTCGAG | 1 cut(s) | 326 |
| PagI | TCATGA | 1 cut(s) | 1828 |
| PaqCI | CACCTGC | 1 cut(s) | 1406 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 396 |
| PctI | GAATGC | 3 cut(s) | 2108, 2243, 2743 |
| PdiI | GCCGGC | 1 cut(s) | 562 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1372, 3094, 3267 |
| PfoI | TCCNGGA | 1 cut(s) | 3001 |
| PinAI | ACCGGT | 1 cut(s) | 34 |
| PleI | GAGTC | 4 cut(s) | 36, 48, 182, 2588 |
| PpsI | GAGTC | 4 cut(s) | 36, 48, 182, 2588 |
| Ppu21I | YACGTR | 1 cut(s) | 734 |
| PpuMI | RGGWCCY | 2 cut(s) | 2230, 2974 |
| PshBI | ATTAAT | 1 cut(s) | 2324 |
| Psp124BI | GAGCTC | 2 cut(s) | 72, 333 |
| Psp5II | RGGWCCY | 2 cut(s) | 2230, 2974 |
| Psp6I | CCWGG | 3 cut(s) | 1846, 3001, 3288 |
| PspEI | GGTNACC | 2 cut(s) | 2006, 2212 |
| PspFI | CCCAGC | 2 cut(s) | 1640, 2233 |
| PspGI | CCWGG | 3 cut(s) | 1846, 3001, 3288 |
| PspPI | GGNCC | 9 cut(s) | 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974 |
| PspPPI | RGGWCCY | 2 cut(s) | 2230, 2974 |
| PspXI | VCTCGAGB | 1 cut(s) | 326 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3393, 3425 |
| PstI | CTGCAG | 3 cut(s) | 1027, 1036, 1417 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1031, 2816 |
| PsuI | RGATCY | 3 cut(s) | 1112, 1605, 2293 |
| PvuII | CAGCTG | 2 cut(s) | 1595, 1640 |
| RsaI | GTAC | 7 cut(s) | 896, 1562, 1806, 2346, 2783, 2862, 3026 |
| RsaNI | GTAC | 7 cut(s) | 895, 1561, 1805, 2345, 2782, 2861, 3025 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2602, 2967 |
| SacI | GAGCTC | 2 cut(s) | 72, 333 |
| SacII | CCGCGG | 1 cut(s) | 370 |
| Sau96I | GGNCC | 9 cut(s) | 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974 |
| ScaI | AGTACT | 1 cut(s) | 1562 |
| SchI | GAGTC | 4 cut(s) | 37, 49, 182, 2588 |
| ScrFI | CCNGG | 7 cut(s) | 314, 747, 748, 1848, 2285, 3003, 3290 |
| SduI | GDGCHC | 5 cut(s) | 72, 333, 363, 2712, 3363 |
| SfcI | CTRYAG | 3 cut(s) | 1023, 1032, 1413 |
| Sfr274I | CTCGAG | 1 cut(s) | 326 |
| Sfr303I | CCGCGG | 1 cut(s) | 370 |
| SgrAI | CRCCGGYG | 2 cut(s) | 34, 497 |
| SgrBI | CCGCGG | 1 cut(s) | 370 |
| SinI | GGWCC | 6 cut(s) | 136, 623, 1634, 2129, 2230, 2974 |
| SlaI | CTCGAG | 1 cut(s) | 326 |
| SmaI | CCCGGG | 1 cut(s) | 748 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2602, 2967 |
| SmlI | CTYRAG | 4 cut(s) | 245, 326, 353, 515 |
| SmoI | CTYRAG | 4 cut(s) | 245, 326, 353, 515 |
| SspI | AATATT | 1 cut(s) | 1406 |
| SspMI | CTAG | 4 cut(s) | 557, 759, 2799, 3105 |
| SstI | GAGCTC | 2 cut(s) | 72, 333 |
| StyD4I | CCNGG | 7 cut(s) | 312, 745, 746, 1846, 2283, 3001, 3288 |
| StyI | CCWWGG | 6 cut(s) | 123, 144, 2226, 2364, 2438, 3217 |
| TaiI | ACGT | 4 cut(s) | 491, 736, 2069, 2709 |
| TaqI | TCGA | 7 cut(s) | 105, 327, 345, 643, 1207, 1988, 2837 |
| TaqII | GACCGA | 2 cut(s) | 1064, 2240 |
| TatI | WGTACW | 3 cut(s) | 1560, 2860, 3024 |
| TauI | GCSGC | 7 cut(s) | 200, 203, 206, 281, 372, 1755, 3128 |
| TseFI | GTSAC | 6 cut(s) | 1483, 1872, 2006, 2356, 3031, 3329 |
| TseI | GCWGC | 7 cut(s) | 60, 995, 1088, 1240, 1412, 1577, 3467 |
| Tsp45I | GTSAC | 6 cut(s) | 1483, 1872, 2006, 2356, 3031, 3329 |
| TspMI | CCCGGG | 1 cut(s) | 746 |
| Vha464I | CTTAAG | 1 cut(s) | 515 |
| VneI | GTGCAC | 1 cut(s) | 2708 |
| VpaK11BI | GGWCC | 6 cut(s) | 136, 623, 1634, 2129, 2230, 2974 |
| VspI | ATTAAT | 1 cut(s) | 2324 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 143 |
| XapI | RAATTY | 8 cut(s) | 222, 1550, 2195, 2544, 3046, 3094, 3246, 3282 |
| XceI | RCATGY | 1 cut(s) | 568 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3286 |
| XhoI | CTCGAG | 1 cut(s) | 326 |
| XmaI | CCCGGG | 1 cut(s) | 746 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1372, 3094, 3267 |
| XspI | CTAG | 4 cut(s) | 557, 759, 2799, 3105 |
| ZrmI | AGTACT | 1 cut(s) | 1562 |
| Zsp2I | ATGCAT | 2 cut(s) | 1231, 2108 |