Rw2G008370

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011992
Physical Location & Seq
Forward (+)
8309889 .. 8314909
5021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008370.1

Sequence Viewer

Length: 3558 bp
ATGGAAGAATATCCGGAGGAAATGCGGAGTCCACCGGTGAGTCTGGTCTCAGTCGTCGGCTGCTCGGAGCTCCACTCCTTCATCTCCACACACCTCCACTCTCTCGACCCTCCGATCAACACCTTGGCCTTGCCGGACCTCTCCAAGGTCTCTCTCCTCTTACCTCCCCCCAAGCCCAATCCCGCCGACTCCTCCGCCGCCGCTGCGCCTCCTCCCGCCGGAATTTTGAAGCGCGATTGGCTTCTCAAGCACCGCACCAAAGTCCCCGCCGTTGTCGCCGCCCTCATCTCCTCGGATCGGGTCTCCGGCGACCCGGCCCAGTGGCTCGAGCTCTGCTCCGAGATCGACAATCTCAAGGGGCTCATCCGCGGCCGGAGCATCAAATTGGTCGTCGTCGTCGTCAACTCCCACTCCACTGAAGAAATCTCTGAAGATCAAATGGTTGCGGTGAGGAAACGAGCTGAAGTCGATGCCAAGTATCTTCTCACGTTTTACACCGGCGAAGATTCTCAGCTTAAGCAATCTCTGCATAGATTGGGAACTGTATTTGCCGAGCTAGCGGGCATGTATTACAGAGACGAAGGAAGAAGGATTAAATTGCGCATTGAGAGGAAGAGTTCTGGTCCTACTGACTTGAACATTCGATATTCCTTCAAAGTTGCTGTGTATGCGGAGTTCAGAAGAGACTGGGTGGAAGCTTTGAGGTTTTATGAGGATGCTTATCATATGCTACGTGAGGTGATTCCCGGGGTATCAACTAGGTTGTCAGCCATTCAACGGTTAGTGGAGATAAAAACTGTGGCAGAGCAATTGCATTTCAAAATCTCAACTTTGTTATTGCATGGTGGAAAGATTATGGAAGCAGTTATATGGTTCCGCCAACACAATGCTTCGTACAGAAAGCTCAAAGGATCACCAGAAGCTATATTTCTTCACTGGGAGTGGATGAGCAGACAGTTCTTGGTGTTTGCCGAGTTGCTGGAGACAAGTTCAGCAGCCATTCAGAGCATTTCACATCTAACTGCAGGCACTGCAGATAGACCTTTGACCGAGTGGGAGTTTCAGCCAGCTCATTACTATCAGTTAGCTGCTCATTACTTGAAGGAGAAGAGATCTTCTTTGGACTTTGCAGTTTCTATGTCAGAAGGTGAGATTGATTATAGTGCTGAATCTGTGGCACCCTCATCCCATATGGGTCAGTTTGCTCGATTGATTGAACAAGGAGATGCATTTGTCATGCAGCCCCTTACTGATGAAGAGTATATGCGTTATGCAATTTCTGAAGGAAAAAGGTTCCAAGATTCCTTTGAAATTATTGCTTTACTCAAAAAATCTTGTGAATCTTACAATAATCTAAAAGTCAGGAGAATGGCTTCATTTTGTGGGTTCCAGATGGCCAGAGAATATTATGCTGCAGGTGATTTTAACAACGCCAAACTTCTTTTTGATGACATTGCAAGTCTATACAGGCAAGAGGGATGGGTCACTTTGCTGTGGGAGGTATTAGGTTACTTGAGTGAAGGTTCAAGGAAACACAGCAAAGTTAAAGAATTTATAGAGTACTCCTTTGAGATGGCTGCACTCCCTATATCAGCTGATACTGGGATCCAGTCTTTTAGATTCGAAGAATCTGGTCCAGCTGGGCCTGCTACCCTCCAACAAAGAGAAACAATACATAAAGAAGTTTTTGGGCTTGTTAGTGAAAAGCTGGGGTTGGCATCTACTGAAAACGGTGATGATGTCAAAGTAAGCGGCACCAATCCACTTCACCTTGAAATTGATCTCGTCAGTCCCCTTAGATTGGTACTCCTTGCTTCAGTTGCTTTTCATGAACAAATAATCAAGCCTGGCTCATCCACATTGGTTACACTGTCACTCTTATCACAGTTACCACTTAATTTTGAGATTGATCAATTAGAAGTCCAGTTCAATCAGTCTCATTGTAACTTTGTGATCATGGATGCCCAAAAGCCTCATGTAGCTTCCTCGACTGATGGTCAATCAGGTCACCGAAGAGAGACTGCTCCATCTCTGCGACTTTCTACAAACAAATGGCTCCGGTTAACGTATGACATCAAATCGGATCAAAGTGGAAAGCTTGAATGCATATCTATTATTGCCAAAATGGGACCGCACTTTACTATCTGTTGTAGAGCTGAAAGTCCTGCTTCAATGGATGATTTGCCTCTTTGGAAATTTGAAGACCGTGTGGTTACCTATCCAACCAAGGACCCAGCTCTGGCATTCTTCGGTCAGAGAGCAATTCAAGTTGAAGAACCAGACCCGGAAGTGGATCTTACTTTAGGTGCTTCTGGCCCTGCATTAATTGGAGAGAGCTTCATAGTACCTGTTACTGTCACATCCAAGGGACATGAGGTTAATTCGGGTGAGTTGAAGATCAATCTGGTGGATGTAAGGGGAGGTGGTTTGTTTAGTCCAAGGGATGCAGAACTATCTGCGGATAGTCATCATGTTGAACTTCTTGGTATATCTGGATCAGAAGGAGAAGATGAATCCCAATTGGATACCGATGAAATTAAGAAAATTCAAAAGTCTTTTGGATTGGTTTCAGTTCCTAAACTCAAAAGTGGAGACTCATGGTCATGCAAATTGGAAATCAAGTGGTATAGACCCAAACCAGTTATGCTGTATGTATCACTGGGTTATTCTCCAGATAATAGTGGATCAAACGCACAAAAAGTTAATGTGCACAAGAGCTTGCAGATTGAAGGAAAGAATGCAATCTCAATTAGCCATCGCCTTATGCTTCCTTTCCGCAGGTACCCGTTGTTGCTTTCTAGGACAAAATCAGTTCCTGATTCTGATCAGTCAGTGTCGATGCCTTTAAACGAAACAAGTGTACTCATTGTTAGTGCTACGAATTGCTCAGAGGTGCCACTTCAGTTACTATCATTATCTATTGAAAGAGATAATGATGACACTGAAGGGTCATGTTCTTTGCATGGAGGTGAGGACCTTTTAAACCCTGCCCTTCTTGTTCCAGGAGAGAAGTTTAAGAAGGTGTACACTGTCACTTCTGAGATGAATTCTTCAAAGCTTATATTAGGTAATGTGTGTCTTAGATGGAGAAGGAATTCTGGGACTAGAGAACAAGCTGGTTCTGCGGCTCCAGTTATGACTAACCACAAACTTCCTGATGTGAATCTGGAATCATCACCTCTTGTCGTGAGTTTGGAGTGTCCTCCTTACGCAATCCTTGGCGATCCTTTCACATATTTTGTTAAAATTCAGAACCAAACAGAACTGCTTCAAGAGGCCAAAATTTTCCTGGCAGATGCTCAAAGTTTTGTAATATCTGGGTCTCACAGTGACACGGTATATATTCTTCCAAAATCTGAGCACATCATCAGTTACAAGCTTGTCCCGCTTTCCTCAGGGGAACAACAGCTACCCAGATTCACTTTAACCGCAGTTAGATATTCCACTGGGTTTCAGCCTTCAATTGCTGCATCTACTATTTTTGTTTTCCCCTCTCAGCCTCATTTTAAGATGGTTGCTGTGGGAGACGACAGGAAGGAATCAGTGGTGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

1185

Amino Acids

131.91

Weight (kDa)

5.82

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Foie-gras_1 PF11817 260 - 527 5.4e-65 Foie gras liver health family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65950
fragaria_vesca FvH4_1g10000
malus_domestica MD15G1228100.v1.1
prunus_persica Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1
pyrus_communis pycom15g20290
rosa_chinensis RchiOBHm_Chr2g0096791
rosa_laevigata RLG00000016670 RLG00000023097
rosa_multiflora Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031
rosa_roxburghii Rroxscaffold_2G00145310
rosa_rugosa Rorug02G0060900
rosa_samantha Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700
rosa_wichuraiana Rw2G008370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1406
Acc16I TGCGCA 1 cut(s) 602
Acc36I ACCTGC 2 cut(s) 1406, 2769
Acc65I GGTACC 1 cut(s) 2781
AccB1I GGYRCC 4 cut(s) 1177, 1754, 2781, 2893
AccII CGCG 2 cut(s) 234, 369
AccIII TCCGGA 1 cut(s) 13
AclWI GGATC 9 cut(s) 303, 919, 1600, 1613, 2091, 2301, 2503, 2692, 3218
AcoI YGGCCR 2 cut(s) 370, 1395
AcsI RAATTY 8 cut(s) 222, 1550, 2195, 2544, 3046, 3094, 3246, 3282
AcuI CTGAAG 7 cut(s) 438, 450, 483, 1302, 1800, 2885, 2964
AfaI GTAC 7 cut(s) 896, 1562, 1806, 2346, 2783, 2862, 3026
AfiI CCNNNNNNNGG 7 cut(s) 145, 218, 297, 777, 1801, 2239, 2290
AflII CTTAAG 1 cut(s) 515
AgeI ACCGGT 1 cut(s) 34
AhdI GACNNNNNGTC 2 cut(s) 1995, 2599
AjnI CCWGG 3 cut(s) 1846, 3001, 3288
Alw21I GWGCWC 4 cut(s) 72, 333, 2712, 3363
Alw44I GTGCAC 1 cut(s) 2708
AlwI GGATC 9 cut(s) 303, 919, 1600, 1613, 2091, 2301, 2503, 2692, 3218
AlwNI CAGNNNCTG 2 cut(s) 1031, 2816
Ama87I CYCGRG 2 cut(s) 326, 746
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 7 cut(s) 126, 315, 370, 1395, 1643, 2314, 3276
ApaLI GTGCAC 1 cut(s) 2708
ApeKI GCWGC 8 cut(s) 60, 203, 995, 1088, 1240, 1412, 1577, 3467
ApoI RAATTY 8 cut(s) 222, 1550, 2195, 2544, 3046, 3094, 3246, 3282
ArsI GACNNNNNNTTYG 2 cut(s) 375, 407
AseI ATTAAT 1 cut(s) 2324
AsiGI ACCGGT 1 cut(s) 34
Asp700I GAANNNNTTC 3 cut(s) 1372, 3094, 3267
Asp718I GGTACC 1 cut(s) 2781
AspLEI GCGC 3 cut(s) 208, 234, 603
AspS9I GGNCC 9 cut(s) 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974
AsuC2I CCSGG 4 cut(s) 314, 747, 748, 2285
AsuII TTCGAA 1 cut(s) 1623
AsuNHI GCTAGC 1 cut(s) 556
AvaI CYCGRG 2 cut(s) 326, 746
AvaII GGWCC 6 cut(s) 136, 623, 1634, 2129, 2230, 2974
AxyI CCTNAGG 1 cut(s) 3394
BaeGI GKGCMC 1 cut(s) 2712
BalI TGGCCA 1 cut(s) 1397
BamHI GGATCC 1 cut(s) 1605
BanI GGYRCC 4 cut(s) 1177, 1754, 2781, 2893
BanII GRGCYC 3 cut(s) 72, 333, 363
BarI GAAGNNNNNNTAC 2 cut(s) 3330, 3362
BbsI GAAGAC 1 cut(s) 2208
Bbv12I GWGCWC 4 cut(s) 72, 333, 2712, 3363
BbvI GCAGC 8 cut(s) 47, 190, 1007, 1075, 1252, 1399, 1564, 3454
BccI CCATC 8 cut(s) 1387, 1473, 1567, 1988, 2035, 2763, 3078, 3505
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 3 cut(s) 1848, 3003, 3290
BciVI GTATCC 1 cut(s) 2518
BclI TGATCA 3 cut(s) 1909, 1953, 2824
BcnI CCSGG 4 cut(s) 314, 747, 748, 2285
BfaI CTAG 4 cut(s) 557, 759, 2799, 3105
BfmI CTRYAG 3 cut(s) 1023, 1032, 1413
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 2 cut(s) 1406, 2769
BfuI GTATCC 1 cut(s) 2518
BglII AGATCT 1 cut(s) 1112
BmcAI AGTACT 1 cut(s) 1562
Bme1390I CCNGG 7 cut(s) 314, 747, 748, 1848, 2285, 3003, 3290
Bme18I GGWCC 6 cut(s) 136, 623, 1634, 2129, 2230, 2974
BmeRI GACNNNNNGTC 2 cut(s) 1995, 2599
BmeT110I CYCGRG 2 cut(s) 326, 746
BmgT120I GGNCC 9 cut(s) 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974
BmrFI CCNGG 7 cut(s) 314, 747, 748, 1848, 2285, 3003, 3290
BmrI ACTGGG 6 cut(s) 313, 697, 946, 1611, 2669, 3456
BmtI GCTAGC 1 cut(s) 560
BmuI ACTGGG 6 cut(s) 313, 697, 946, 1611, 2669, 3456
BpiI GAAGAC 1 cut(s) 2208
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 320, 352
BpmI CTGGAG 3 cut(s) 1001, 2655, 3114
Bpu14I TTCGAA 1 cut(s) 1623
BpuEI CTTGAG 3 cut(s) 230, 338, 1534
BpuMI CCSGG 4 cut(s) 314, 747, 748, 2285
BsaAI YACGTR 1 cut(s) 734
BsaBI GATNNNNATC 4 cut(s) 720, 2466, 2823, 3162
BsaI GGTCTC 4 cut(s) 52, 154, 307, 3327
BsaWI WCCGGW 3 cut(s) 13, 34, 2058
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 7 cut(s) 145, 218, 297, 777, 1801, 2239, 2290
Bse118I RCCGGY 2 cut(s) 34, 497
Bse21I CCTNAGG 1 cut(s) 3394
Bse3DI GCAATG 1 cut(s) 1452
Bse8I GATNNNNATC 4 cut(s) 720, 2466, 2823, 3162
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 3 cut(s) 1848, 3003, 3290
BseJI GATNNNNATC 4 cut(s) 720, 2466, 2823, 3162
BseLI CCNNNNNNNGG 7 cut(s) 145, 218, 297, 777, 1801, 2239, 2290
BseMI GCAATG 1 cut(s) 1452
BseMII CTCAG 7 cut(s) 63, 524, 2901, 3030, 3348, 3408, 3509
BseRI GAGGAG 4 cut(s) 146, 181, 201, 280
BseSI GKGCMC 1 cut(s) 2712
BseX3I CGGCCG 1 cut(s) 370
BseXI GCAGC 8 cut(s) 47, 190, 1007, 1075, 1252, 1399, 1564, 3454
BseYI CCCAGC 3 cut(s) 1640, 1708, 2233
BsgI GTGCAG 1 cut(s) 1563
Bsh1236I CGCG 2 cut(s) 234, 369
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 7 cut(s) 128, 317, 372, 1397, 1645, 2316, 3278
BshNI GGYRCC 4 cut(s) 1177, 1754, 2781, 2893
BshTI ACCGGT 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 4 cut(s) 72, 333, 2712, 3363
BsiHKCI CYCGRG 2 cut(s) 326, 746
BslFI GGGAC 6 cut(s) 248, 1776, 2142, 2382, 3115, 3368
BslI CCNNNNNNNGG 7 cut(s) 145, 218, 297, 777, 1801, 2239, 2290
BsmBI CGTCTC 2 cut(s) 570, 3519
BsmFI GGGAC 6 cut(s) 248, 1776, 2142, 2382, 3115, 3368
BsmI GAATGC 3 cut(s) 2108, 2243, 2743
BsnI GGCC 7 cut(s) 128, 317, 372, 1397, 1645, 2316, 3278
Bso31I GGTCTC 4 cut(s) 52, 154, 307, 3327
BsoBI CYCGRG 2 cut(s) 326, 746
Bsp119I TTCGAA 1 cut(s) 1623
Bsp1286I GDGCHC 5 cut(s) 72, 333, 363, 2712, 3363
Bsp13I TCCGGA 1 cut(s) 13
Bsp1407I TGTACA 1 cut(s) 3024
BspANI GGCC 7 cut(s) 128, 317, 372, 1397, 1645, 2316, 3278
BspCNI CTCAG 7 cut(s) 62, 523, 2900, 3031, 3349, 3407, 3508
BspEI TCCGGA 1 cut(s) 13
BspFNI CGCG 2 cut(s) 234, 369
BspHI TCATGA 1 cut(s) 1828
BspMAI CTGCAG 3 cut(s) 1027, 1036, 1417
BspMI ACCTGC 2 cut(s) 1406, 2769
BspOI GCTAGC 1 cut(s) 560
BspPI GGATC 9 cut(s) 303, 919, 1600, 1613, 2091, 2301, 2503, 2692, 3218
BspT104I TTCGAA 1 cut(s) 1623
BspT107I GGYRCC 4 cut(s) 1177, 1754, 2781, 2893
BspTI CTTAAG 1 cut(s) 515
BspTNI GGTCTC 4 cut(s) 52, 154, 307, 3327
BsrDI GCAATG 1 cut(s) 1452
BsrFI RCCGGY 2 cut(s) 34, 497
BsrGI TGTACA 1 cut(s) 3024
BssAI RCCGGY 2 cut(s) 34, 497
BssT1I CCWWGG 6 cut(s) 123, 144, 2226, 2364, 2438, 3217
Bst2UI CCWGG 3 cut(s) 1848, 3003, 3290
Bst6I CTCTTC 5 cut(s) 608, 676, 1103, 1251, 2008
BstAFI CTTAAG 1 cut(s) 515
BstAPI GCANNNNNTGC 2 cut(s) 526, 1031
BstAUI TGTACA 1 cut(s) 3024
BstBAI YACGTR 1 cut(s) 734
BstBI TTCGAA 1 cut(s) 1623
BstC8I GCNNGC 6 cut(s) 558, 562, 1027, 1068, 1647, 2720
BstDEI CTNAG 9 cut(s) 49, 510, 1796, 2887, 3039, 3080, 3357, 3394, 3495
BstDSI CCRYGG 1 cut(s) 367
BstEII GGTNACC 2 cut(s) 2006, 2212
BstENI CCTNNNNNAGG 1 cut(s) 143
BstFNI CGCG 2 cut(s) 234, 369
BstHHI GCGC 3 cut(s) 208, 234, 603
BstMCI CGRYCG 1 cut(s) 373
BstNI CCWGG 3 cut(s) 1848, 3003, 3290
BstNSI RCATGY 1 cut(s) 568
BstPI GGTNACC 2 cut(s) 2006, 2212
BstSCI CCNGG 7 cut(s) 312, 745, 746, 1846, 2283, 3001, 3288
BstSFI CTRYAG 3 cut(s) 1023, 1032, 1413
BstSLI GKGCMC 1 cut(s) 2712
BstUI CGCG 2 cut(s) 234, 369
BstV1I GCAGC 8 cut(s) 47, 190, 1007, 1075, 1252, 1399, 1564, 3454
BstV2I GAAGAC 1 cut(s) 2208
BstX2I RGATCY 3 cut(s) 1112, 1605, 2293
BstYI RGATCY 3 cut(s) 1112, 1605, 2293
BstZI CGGCCG 1 cut(s) 370
Bsu36I CCTNAGG 1 cut(s) 3394
BsuI GTATCC 1 cut(s) 2518
BsuRI GGCC 7 cut(s) 128, 317, 372, 1397, 1645, 2316, 3278
BtgI CCRYGG 1 cut(s) 367
BtgZI GCGATG 1 cut(s) 2741
BtsI GCAGTG 1 cut(s) 1029
BveI ACCTGC 2 cut(s) 1406, 2769
Cac8I GCNNGC 6 cut(s) 558, 562, 1027, 1068, 1647, 2720
CaiI CAGNNNCTG 2 cut(s) 1031, 2816
CciI TCATGA 1 cut(s) 1828
CfoI GCGC 3 cut(s) 208, 234, 603
Cfr10I RCCGGY 2 cut(s) 34, 497
Cfr13I GGNCC 9 cut(s) 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974
Cfr42I CCGCGG 1 cut(s) 370
Cfr9I CCCGGG 1 cut(s) 746
Csp6I GTAC 7 cut(s) 895, 1561, 1805, 2345, 2782, 2861, 3025
CspAI ACCGGT 1 cut(s) 34
CviQI GTAC 7 cut(s) 895, 1561, 1805, 2345, 2782, 2861, 3025
DdeI CTNAG 9 cut(s) 49, 510, 1796, 2887, 3039, 3080, 3357, 3394, 3495
DraI TTTAAA 2 cut(s) 2847, 2982
DriI GACNNNNNGTC 2 cut(s) 1995, 2599
EaeI YGGCCR 2 cut(s) 370, 1395
EagI CGGCCG 1 cut(s) 370
Eam1104I CTCTTC 5 cut(s) 608, 676, 1103, 1251, 2008
Eam1105I GACNNNNNGTC 2 cut(s) 1995, 2599
EarI CTCTTC 5 cut(s) 608, 676, 1103, 1251, 2008
EciI GGCGGA 2 cut(s) 184, 866
Ecl136II GAGCTC 2 cut(s) 70, 331
EclXI CGGCCG 1 cut(s) 370
Eco130I CCWWGG 6 cut(s) 123, 144, 2226, 2364, 2438, 3217
Eco24I GRGCYC 3 cut(s) 72, 333, 363
Eco31I GGTCTC 4 cut(s) 52, 154, 307, 3327
Eco47I GGWCC 6 cut(s) 136, 623, 1634, 2129, 2230, 2974
Eco52I CGGCCG 1 cut(s) 370
Eco53kI GAGCTC 2 cut(s) 70, 331
Eco57I CTGAAG 7 cut(s) 438, 450, 483, 1302, 1800, 2885, 2964
Eco81I CCTNAGG 1 cut(s) 3394
Eco88I CYCGRG 2 cut(s) 326, 746
Eco91I GGTNACC 2 cut(s) 2006, 2212
EcoICRI GAGCTC 2 cut(s) 70, 331
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO109I RGGNCCY 2 cut(s) 2230, 2974
EcoO65I GGTNACC 2 cut(s) 2006, 2212
EcoRI GAATTC 2 cut(s) 3046, 3094
EcoRII CCWGG 3 cut(s) 1846, 3001, 3288
EcoT14I CCWWGG 6 cut(s) 123, 144, 2226, 2364, 2438, 3217
EcoT22I ATGCAT 2 cut(s) 1231, 2108
EcoT38I GRGCYC 3 cut(s) 72, 333, 363
ErhI CCWWGG 6 cut(s) 123, 144, 2226, 2364, 2438, 3217
Esp3I CGTCTC 2 cut(s) 570, 3519
FalI AAGNNNNNCTT 4 cut(s) 2152, 2184, 2280, 2312
FaqI GGGAC 6 cut(s) 248, 1776, 2142, 2382, 3115, 3368
FauI CCCGC 5 cut(s) 190, 223, 274, 553, 3393
FauNDI CATATG 2 cut(s) 726, 1191
FbaI TGATCA 3 cut(s) 1909, 1953, 2824
FriOI GRGCYC 3 cut(s) 72, 333, 363
FspBI CTAG 4 cut(s) 557, 759, 2799, 3105
FspI TGCGCA 1 cut(s) 602
GlaI GCGC 3 cut(s) 207, 233, 602
GsaI CCCAGC 3 cut(s) 1644, 1712, 2237
GsuI CTGGAG 3 cut(s) 1001, 2655, 3114
HaeIII GGCC 7 cut(s) 128, 317, 372, 1397, 1645, 2316, 3278
HhaI GCGC 3 cut(s) 208, 234, 603
Hin6I GCGC 3 cut(s) 206, 232, 601
HinP1I GCGC 3 cut(s) 206, 232, 601
HincII GTYRAC 2 cut(s) 403, 2064
HindII GTYRAC 2 cut(s) 403, 2064
HindIII AAGCTT 4 cut(s) 696, 2096, 3056, 3377
HpaI GTTAAC 1 cut(s) 2064
Hpy166II GTNNAC 7 cut(s) 32, 403, 2064, 2710, 2861, 3025, 3027
Hpy8I GTNNAC 7 cut(s) 32, 403, 2064, 2710, 2861, 3025, 3027
Hpy99I CGWCG 4 cut(s) 59, 395, 398, 401
HpyCH4IV ACGT 3 cut(s) 488, 733, 2066
HpyF3I CTNAG 9 cut(s) 49, 510, 1796, 2887, 3039, 3080, 3357, 3394, 3495
HpySE526I ACGT 3 cut(s) 488, 733, 2066
HspAI GCGC 3 cut(s) 206, 232, 601
Kpn2I TCCGGA 1 cut(s) 13
KpnI GGTACC 1 cut(s) 2785
Ksp22I TGATCA 3 cut(s) 1909, 1953, 2824
KspAI GTTAAC 1 cut(s) 2064
KspI CCGCGG 1 cut(s) 370
LmnI GCTCC 7 cut(s) 67, 75, 341, 375, 2029, 2061, 3133
Lsp1109I GCAGC 8 cut(s) 47, 190, 1007, 1075, 1252, 1399, 1564, 3454
MaeI CTAG 4 cut(s) 557, 759, 2799, 3105
MaeII ACGT 3 cut(s) 488, 733, 2066
MfeI CAATTG 3 cut(s) 809, 2519, 3462
MflI RGATCY 3 cut(s) 1112, 1605, 2293
MhlI GDGCHC 5 cut(s) 72, 333, 363, 2712, 3363
MlsI TGGCCA 1 cut(s) 1397
MluNI TGGCCA 1 cut(s) 1397
MlyI GAGTC 4 cut(s) 37, 49, 182, 2588
MmeI TCCRAC 2 cut(s) 1681, 2246
Mox20I TGGCCA 1 cut(s) 1397
Mph1103I ATGCAT 2 cut(s) 1231, 2108
MroI TCCGGA 1 cut(s) 13
MroXI GAANNNNTTC 3 cut(s) 1372, 3094, 3267
MscI TGGCCA 1 cut(s) 1397
MslI CAYNNNNRTG 2 cut(s) 2602, 2967
Msp20I TGGCCA 1 cut(s) 1397
MspA1I CMGCKG 4 cut(s) 203, 369, 1595, 1640
MspCI CTTAAG 1 cut(s) 515
MspR9I CCNGG 7 cut(s) 314, 747, 748, 1848, 2285, 3003, 3290
MunI CAATTG 3 cut(s) 809, 2519, 3462
Mva1269I GAATGC 3 cut(s) 2108, 2243, 2743
MvaI CCWGG 3 cut(s) 1848, 3003, 3290
MvnI CGCG 2 cut(s) 234, 369
NciI CCSGG 4 cut(s) 314, 747, 748, 2285
NdeI CATATG 2 cut(s) 726, 1191
NheI GCTAGC 1 cut(s) 556
NmeAIII GCCGAG 2 cut(s) 577, 997
NmuCI GTSAC 6 cut(s) 1483, 1872, 2006, 2356, 3031, 3329
NsbI TGCGCA 1 cut(s) 602
NsiI ATGCAT 2 cut(s) 1231, 2108
NspI RCATGY 1 cut(s) 568
NspV TTCGAA 1 cut(s) 1623
PaeR7I CTCGAG 1 cut(s) 326
PagI TCATGA 1 cut(s) 1828
PaqCI CACCTGC 1 cut(s) 1406
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 3 cut(s) 2108, 2243, 2743
PdmI GAANNNNTTC 3 cut(s) 1372, 3094, 3267
PfoI TCCNGGA 1 cut(s) 3001
PinAI ACCGGT 1 cut(s) 34
PleI GAGTC 4 cut(s) 36, 48, 182, 2588
PpsI GAGTC 4 cut(s) 36, 48, 182, 2588
Ppu21I YACGTR 1 cut(s) 734
PpuMI RGGWCCY 2 cut(s) 2230, 2974
PshBI ATTAAT 1 cut(s) 2324
Psp124BI GAGCTC 2 cut(s) 72, 333
Psp5II RGGWCCY 2 cut(s) 2230, 2974
Psp6I CCWGG 3 cut(s) 1846, 3001, 3288
PspEI GGTNACC 2 cut(s) 2006, 2212
PspFI CCCAGC 3 cut(s) 1640, 1708, 2233
PspGI CCWGG 3 cut(s) 1846, 3001, 3288
PspPI GGNCC 9 cut(s) 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974
PspPPI RGGWCCY 2 cut(s) 2230, 2974
PspXI VCTCGAGB 1 cut(s) 326
PsrI GAACNNNNNNTAC 4 cut(s) 659, 691, 3393, 3425
PstI CTGCAG 3 cut(s) 1027, 1036, 1417
PstNI CAGNNNCTG 2 cut(s) 1031, 2816
PsuI RGATCY 3 cut(s) 1112, 1605, 2293
PvuII CAGCTG 2 cut(s) 1595, 1640
RsaI GTAC 7 cut(s) 896, 1562, 1806, 2346, 2783, 2862, 3026
RsaNI GTAC 7 cut(s) 895, 1561, 1805, 2345, 2782, 2861, 3025
RseI CAYNNNNRTG 2 cut(s) 2602, 2967
SacI GAGCTC 2 cut(s) 72, 333
SacII CCGCGG 1 cut(s) 370
Sau96I GGNCC 9 cut(s) 136, 316, 623, 1634, 1643, 2129, 2230, 2315, 2974
ScaI AGTACT 1 cut(s) 1562
SchI GAGTC 4 cut(s) 37, 49, 182, 2588
ScrFI CCNGG 7 cut(s) 314, 747, 748, 1848, 2285, 3003, 3290
SduI GDGCHC 5 cut(s) 72, 333, 363, 2712, 3363
SfcI CTRYAG 3 cut(s) 1023, 1032, 1413
Sfr274I CTCGAG 1 cut(s) 326
Sfr303I CCGCGG 1 cut(s) 370
SfuI TTCGAA 1 cut(s) 1623
SgrAI CRCCGGYG 2 cut(s) 34, 497
SgrBI CCGCGG 1 cut(s) 370
SinI GGWCC 6 cut(s) 136, 623, 1634, 2129, 2230, 2974
SlaI CTCGAG 1 cut(s) 326
SmaI CCCGGG 1 cut(s) 748
SmiMI CAYNNNNRTG 2 cut(s) 2602, 2967
SmlI CTYRAG 5 cut(s) 245, 326, 353, 515, 1513
SmoI CTYRAG 5 cut(s) 245, 326, 353, 515, 1513
SspI AATATT 1 cut(s) 1406
SspMI CTAG 4 cut(s) 557, 759, 2799, 3105
SstI GAGCTC 2 cut(s) 72, 333
StyD4I CCNGG 7 cut(s) 312, 745, 746, 1846, 2283, 3001, 3288
StyI CCWWGG 6 cut(s) 123, 144, 2226, 2364, 2438, 3217
TaiI ACGT 3 cut(s) 491, 736, 2069
TaqI TCGA 9 cut(s) 105, 327, 345, 468, 643, 1207, 1623, 1988, 2837
TaqII GACCGA 2 cut(s) 1064, 2240
TatI WGTACW 3 cut(s) 1560, 2860, 3024
TauI GCSGC 6 cut(s) 200, 203, 281, 372, 1755, 3128
TseFI GTSAC 6 cut(s) 1483, 1872, 2006, 2356, 3031, 3329
TseI GCWGC 8 cut(s) 60, 203, 995, 1088, 1240, 1412, 1577, 3467
Tsp45I GTSAC 6 cut(s) 1483, 1872, 2006, 2356, 3031, 3329
TspDTI ATGAA 9 cut(s) 70, 1269, 1365, 1817, 1845, 2329, 2526, 2547, 3059
TspMI CCCGGG 1 cut(s) 746
Vha464I CTTAAG 1 cut(s) 515
VneI GTGCAC 1 cut(s) 2708
VpaK11BI GGWCC 6 cut(s) 136, 623, 1634, 2129, 2230, 2974
VspI ATTAAT 1 cut(s) 2324
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 8 cut(s) 222, 1550, 2195, 2544, 3046, 3094, 3246, 3282
XceI RCATGY 1 cut(s) 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 3286
XhoI CTCGAG 1 cut(s) 326
XmaI CCCGGG 1 cut(s) 746
XmnI GAANNNNTTC 3 cut(s) 1372, 3094, 3267
XspI CTAG 4 cut(s) 557, 759, 2799, 3105
ZrmI AGTACT 1 cut(s) 1562
Zsp2I ATGCAT 2 cut(s) 1231, 2108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.