FvH4_1g10000

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011992
Physical Location & Seq
Forward (+)
5431659 .. 5437304
5646 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10000.t1

Sequence Viewer

Length: 3561 bp
ATGGAGGAATATCCAGAGGAAATGCGGAGTCCACCGGTGAGTCTAGTCTCAGTCGTCGGCTGCCCGGAGCTCCACTCCTCCATCTCCACACACCTCCACTCCCTCGACCCTCCGATCAACACCTTGGCCATGCCGGACCTCTCCAAGGTCTCTCACCTCTTACCTCCCCCCAAGCCCAACCCCGGCGACTCCTCCTCCGCCTCCGCCGCCGCTCCTCCCGCCGGAATTCTCAAGCGCGATTGGCTTCTCAAGCACCGCACCAAAGTCCCCGCCGTCGTCGCCGCGCTCATCTCCTCGGATCGGGTCTCCGGCGACCCGGCCCAGTGGCTCGAGCTCTGCTCCGAAATCGACAATCTCAAGGGACTCCTCCGCGGCCGCAGCACCAAATTGGTCCTCGTCGTCGTCCACTCCAGCTCCACTGAAGAAATCTCTGAAGATCAAATGGTTGCGGTGAGAAAACGAGCTGAAGTAGATGCCAAGTATCTTCTCACGTTTTACACAGTCGAAGATACTCAGCTTAAGCAATCCCTGTTTAGATTGGCAAGTGTGCTTTCTGAGCTAGCCGCCACGTATTACAGAGACGAAGGGAGAAGGATTAAAGCGCGCATTGAGAGGAAGAGTTCTGGTCCTACTGACTTGAACATTCGATATTCCTTCAAAGTCGCTGTATATGCCGAGTTCAGAAGAGACTGGGTGGAAGCTTTAAAGTTTTATGAGGATGCTTATCATACGCTACGTGAGGTGATTGCCGGTGCATCGACTAGGTTGTCGGCCATTCAACGCTTAGTGGAGATAAAAACTGTTGCAGAGCAATTGCATTTCAAAATTGCAACTTTGTTATTGCATGGTGGAAAGATTATGGAAGCAGTTACGTGGTTCCGCCAACACAATGCTTCATACAGAAAGATCAAAGGATCACCAGAAGCTATATTTCTTCACTGGGAGTGGATGAGTAGACAGTTCTTGGTGTTTGCGGAGTTGCTAGAGACAAGTTCAGCAGCCGTTCAGAGCATTTCACATCTAACTCCAGGCACTGGAGATAGACCTTTGACTGAGTGGGAGTTCCGGCCAGCTCATTATTATCAGCTAGCTGCTCATTACTTGAAGGAGAAGAGATCTTCTTTGGACTTTGCAGTTTCCATGTCGGAAGGTGAGATTGATTGTAGTGCTGAATCTGTGGCACCATCATCCTATTTGGGCCAGTTTGCTCGATTGATTGAAGAAGGAGATGCATTTGTCATGCAGCCCCTTACTGATGAAGAGTATATGCGTTATGCAATTTCTGAAGGAAAAAGGTTCCAAGATTCCTTTGAAATTATTGCTTTACTAAAAAAATCTTGTGAATCCTACAACAGTCTTAAAGTCAGGAGAATGGCTTCGTTTTGTGGGTTCCAGATGGCAAGAGAATATTATGCTGCAGATGATTTTAACAACGCAAAACTGCTTTTTGATGACATTGCAAGTCTATACAGGCAAGAGGGATGGGTCACTTTGCTGTGGGAGGTATTAGGTTACCTGCGTGAAGGTTCAAGGAAACACAGCAAAGTTAAAGAATTCATAGAATACTCCTTTGAGATGGCTGCACTCCCTATATCAGCTGATACTGGTATCCAGTCTTTCAGATTTGAAGAATCTGGTCCAGCTGGGCCTGCTACCCTCCAACAAAGAGAGACAATACATAAAGAAGTTTTTGGGCTTGTTAGTGAAAAAATGGGGTTGGCATCTATTGAAAACGGTGGTGATGTCAAAATAAGCAGCAACAATCCACTTCACCTTGAAATCGATCTCGTCAGTCCCCTTAGATTAGTACTCCTTGCTTCAGTTGCTTTTCATGAACAGATGACCAAGCCTGGTTCATCCACATTGGTTACATTGTCACTCTTGTCACAGTTACCACTTACTTTTGAGATTGATCAATTAGAAGTCCAGTTCAATCAGTCTTATTGTAACTTTGTCATCATGGATGCCCAAAAGCCTCATGTTGCTTCCTTGACAGATGGTCAATCAGGTCGCCGAAGAGAGACTGCTACATCTTTGCGACTTTCTACAAATAAATGGCTCCGCTTAACATATGACATCAAATCTGATCAAAGCGGAAAGCTTGAATGCACATCTGTTATTGCCAAAATGGGACCCCACTTTACCATCTGTTGTAGAGCTGAAAGTCCGGCTTCAATGGATGATTTGCCTCTTTGGAAGTTTGAAGACCGTGTGATTACCTATTCGACCAAGGACCCTGCTCTGGCATTCTCTGGCCAGAGAGCGATTCAAGTTGAAGAACCAGACCCCGAAGTGGATCTTGCTTTAGGTGCTTCTGGCCCTGCTTTAATCGGGGAAAGCTTCATAATACCTGTTACTGTCACATCCAAGGGACATGAGGTTAATTCAGGTGAGTTGAAGATCAATCTGGTGGATGTTAGGGGAGGTGGTTTGTTTAGTCCAAGGGATGCAGAACTATCTACGGAGAGTCATCACGTTGAACTTGTTGGTGTATCTGGATCAGAAGGAGAAGATGAATCCCAATTGAATACTGATGACATTAAGAAAATCCAGAAGGCTTTTGGATTGGTTTCGGTTCCTAATCTAAAAAGTGGAGACTCCTGGTCGTGCAAATTGGAAATCAAGTGGTACAGACCCAAGCCAATTATGCTGTTTGTATCATTGGGTTATTCTCCAGATAATAAAGAATCAAACACACAAAAAGTTAATGTGCACAAGAGCTTGCAGATTGAGGGAAAGAATGCAATCACAATTAGCCATCGCCTTATGCTTCCGTTCCGCAGGTACCCGTTGTTGCTTTCTAGGACAAAACCAGTTCCTGATTCTGATCAGTCAGTGTCAATGCCTTTAAATGAAACAAGTGTACTCATCGTTAGTGCTAAGAATTGCTCTGAGGTGCCGCTTCAGTTACTATCATTATCTATCGAAGGAGATAATGATGACACTGAAAGGTCATGTTCTTTGCATGGAGGTGAGGACCTTTTAAACCCTGCCCTTCTTGTTCCAGGAGAGAAGTTCAAGAAGGTGTACACTGTCACTTCTGAGATGAATTCTTCAAAGCTCATATTGGGTAATGTGTGTCTTAAATGGAGAAGGAATTCTGGGAATGCAGAACAAGCTGGTTCTGTGGCTCCAGTTATAACTACCCACAGACTTCCCGATGTGAATCTGGAATCATCACCTCTTGTCGTAAGTTTGGAGTGTCCTCCTTACGCAATCCTTGGTGACCCTTTCACATATTTTGTTAAAATTCAGAACCAAACAGAACTGCTTCAGGAAGCCAAAATTTCCCTGGCAGATGCTCAAAGTTTTGTAATATCTGGGTCTCACAGTGACACCGTATATATTCTTCCAAAATCTGAGCACATCATAAGTTACAAGCTTGTCCCGCTTTCCTCAGGTGCACAGCAGCTTCCCAGATTCACTTTAACTGCAGTCAGATATTCGACTGGTTTTCAGCCTTCAATTGCTGCATCTACTATTTTCGTGTTTCCCTCTCAGCCTCAATTTAAGATGGTTGCTGTGGGAGACGACAGGAAGGAATCCTTGGTGGCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

1187

Amino Acids

131.84

Weight (kDa)

5.85

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Foie-gras_1 PF11817 261 - 528 5.6e-67 Foie gras liver health family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65950
fragaria_vesca FvH4_1g10000
malus_domestica MD15G1228100.v1.1
prunus_persica Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1
pyrus_communis pycom15g20290
rosa_chinensis RchiOBHm_Chr2g0096791
rosa_laevigata RLG00000016670 RLG00000023097
rosa_multiflora Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031
rosa_roxburghii Rroxscaffold_2G00145310
rosa_rugosa Rorug02G0060900
rosa_samantha Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700
rosa_wichuraiana Rw2G008370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3140
AasI GACNNNNNNGTC 1 cut(s) 766
Acc36I ACCTGC 2 cut(s) 1524, 2772
Acc65I GGTACC 1 cut(s) 2784
AccB1I GGYRCC 3 cut(s) 1180, 2784, 2896
AccB7I CCANNNNNTGG 1 cut(s) 1034
AccBSI CCGCTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 955
AccII CGCG 4 cut(s) 237, 284, 372, 604
AclWI GGATC 4 cut(s) 306, 922, 2304, 2506
AcoI YGGCCR 5 cut(s) 126, 373, 771, 1067, 2254
AcsI RAATTY 6 cut(s) 225, 1553, 3049, 3097, 3249, 3285
AcuI CTGAAG 7 cut(s) 441, 453, 486, 1305, 1803, 2888, 3257
AfaI GTAC 5 cut(s) 1809, 2630, 2786, 2865, 3029
AfiI CCNNNNNNNGG 7 cut(s) 145, 182, 221, 300, 1034, 2242, 2293
AflII CTTAAG 1 cut(s) 518
AgeI ACCGGT 1 cut(s) 34
AhdI GACNNNNNGTC 2 cut(s) 1998, 2602
AjnI CCWGG 5 cut(s) 1027, 1849, 2600, 3004, 3291
AjuI GAANNNNNNNTTGG 1 cut(s) 3530
Alw21I GWGCWC 5 cut(s) 72, 336, 2715, 3366, 3406
Alw44I GTGCAC 2 cut(s) 2711, 3402
AlwI GGATC 4 cut(s) 306, 922, 2304, 2506
AlwNI CAGNNNCTG 2 cut(s) 1034, 2819
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 9 cut(s) 126, 318, 373, 771, 1067, 1198, 1646, 2254, 2317
ApaLI GTGCAC 2 cut(s) 2711, 3402
ApoI RAATTY 6 cut(s) 225, 1553, 3049, 3097, 3249, 3285
AsiGI ACCGGT 1 cut(s) 34
Asp700I GAANNNNTTC 3 cut(s) 1375, 3097, 3270
Asp718I GGTACC 1 cut(s) 2784
AspLEI GCGC 4 cut(s) 237, 286, 604, 606
AsuC2I CCSGG 3 cut(s) 65, 183, 317
AsuNHI GCTAGC 2 cut(s) 559, 1087
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 7 cut(s) 136, 391, 626, 1637, 2132, 2233, 2977
AxyI CCTNAGG 1 cut(s) 3397
BaeGI GKGCMC 2 cut(s) 2715, 3406
BalI TGGCCA 2 cut(s) 128, 2256
BanI GGYRCC 3 cut(s) 1180, 2784, 2896
BanII GRGCYC 2 cut(s) 72, 336
BarI GAAGNNNNNNTAC 2 cut(s) 3333, 3365
BbsI GAAGAC 1 cut(s) 2211
Bbv12I GWGCWC 5 cut(s) 72, 336, 2715, 3366, 3406
BccI CCATC 9 cut(s) 89, 1192, 1390, 1476, 1570, 1991, 2153, 2766, 3508
BceAI ACGGC 2 cut(s) 257, 986
BciT130I CCWGG 5 cut(s) 1029, 1851, 2602, 3006, 3293
BciVI GTATCC 1 cut(s) 1619
BclI TGATCA 3 cut(s) 1912, 2086, 2827
BcnI CCSGG 3 cut(s) 65, 183, 317
BfaI CTAG 6 cut(s) 44, 560, 762, 983, 1088, 2802
BfmI CTRYAG 2 cut(s) 1416, 3432
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 2 cut(s) 1524, 2772
BfuI GTATCC 1 cut(s) 1619
BglII AGATCT 1 cut(s) 1115
BmcAI AGTACT 1 cut(s) 1809
Bme1390I CCNGG 8 cut(s) 65, 183, 317, 1029, 1851, 2602, 3006, 3293
Bme18I GGWCC 7 cut(s) 136, 391, 626, 1637, 2132, 2233, 2977
BmeRI GACNNNNNGTC 2 cut(s) 1998, 2602
BmeT110I CYCGRG 1 cut(s) 329
BmrFI CCNGG 8 cut(s) 65, 183, 317, 1029, 1851, 2602, 3006, 3293
BmrI ACTGGG 3 cut(s) 316, 700, 949
BmsI GCATC 9 cut(s) 463, 709, 764, 1219, 1730, 1954, 2437, 3289, 3482
BmtI GCTAGC 2 cut(s) 563, 1091
BmuI ACTGGG 3 cut(s) 316, 700, 949
BpiI GAAGAC 1 cut(s) 2211
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 323, 355
BpmI CTGGAG 5 cut(s) 394, 1011, 1056, 2658, 3117
BpuEI CTTGAG 3 cut(s) 215, 233, 341
BpuMI CCSGG 3 cut(s) 65, 183, 317
Bsa29I ATCGAT 1 cut(s) 1782
BsaAI YACGTR 3 cut(s) 570, 737, 873
BsaBI GATNNNNATC 3 cut(s) 723, 2826, 3165
BsaI GGTCTC 3 cut(s) 154, 310, 3330
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 179, 209, 398, 428
Bsc4I CCNNNNNNNGG 7 cut(s) 145, 182, 221, 300, 1034, 2242, 2293
Bse118I RCCGGY 2 cut(s) 34, 749
Bse21I CCTNAGG 1 cut(s) 3397
Bse3DI GCAATG 1 cut(s) 1455
Bse8I GATNNNNATC 3 cut(s) 723, 2826, 3165
BseBI CCWGG 5 cut(s) 1029, 1851, 2602, 3006, 3293
BseCI ATCGAT 1 cut(s) 1782
BseJI GATNNNNATC 3 cut(s) 723, 2826, 3165
BseLI CCNNNNNNNGG 7 cut(s) 145, 182, 221, 300, 1034, 2242, 2293
BseMI GCAATG 1 cut(s) 1455
BseMII CTCAG 9 cut(s) 63, 527, 546, 1044, 2883, 3033, 3351, 3411, 3512
BsePI GCGCGC 1 cut(s) 602
BseRI GAGGAG 6 cut(s) 67, 181, 184, 204, 283, 356
BseSI GKGCMC 2 cut(s) 2715, 3406
BseX3I CGGCCG 1 cut(s) 373
BseYI CCCAGC 1 cut(s) 1643
BsgI GTGCAG 1 cut(s) 1566
Bsh1236I CGCG 4 cut(s) 237, 284, 372, 604
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 9 cut(s) 128, 320, 375, 773, 1069, 1200, 1648, 2256, 2319
BshNI GGYRCC 3 cut(s) 1180, 2784, 2896
BshTI ACCGGT 1 cut(s) 34
BshVI ATCGAT 1 cut(s) 1782
BsiEI CGRYCG 1 cut(s) 376
BsiHKAI GWGCWC 5 cut(s) 72, 336, 2715, 3366, 3406
BsiHKCI CYCGRG 1 cut(s) 329
BslFI GGGAC 6 cut(s) 251, 375, 1779, 2145, 2385, 3371
BslI CCNNNNNNNGG 7 cut(s) 145, 182, 221, 300, 1034, 2242, 2293
BsmBI CGTCTC 2 cut(s) 573, 3522
BsmFI GGGAC 6 cut(s) 251, 375, 1779, 2145, 2385, 3371
BsmI GAATGC 4 cut(s) 2111, 2246, 2746, 3112
BsnI GGCC 9 cut(s) 128, 320, 375, 773, 1069, 1200, 1648, 2256, 2319
Bso31I GGTCTC 3 cut(s) 154, 310, 3330
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 5 cut(s) 72, 336, 2715, 3366, 3406
Bsp1407I TGTACA 1 cut(s) 3027
BspANI GGCC 9 cut(s) 128, 320, 375, 773, 1069, 1200, 1648, 2256, 2319
BspCNI CTCAG 9 cut(s) 62, 526, 547, 1045, 2884, 3034, 3352, 3410, 3511
BspDI ATCGAT 1 cut(s) 1782
BspFNI CGCG 4 cut(s) 237, 284, 372, 604
BspHI TCATGA 1 cut(s) 1831
BspMAI CTGCAG 2 cut(s) 1420, 3436
BspMI ACCTGC 2 cut(s) 1524, 2772
BspOI GCTAGC 2 cut(s) 563, 1091
BspPI GGATC 4 cut(s) 306, 922, 2304, 2506
BspT107I GGYRCC 3 cut(s) 1180, 2784, 2896
BspTI CTTAAG 1 cut(s) 518
BspTNI GGTCTC 3 cut(s) 154, 310, 3330
BsrBI CCGCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 1455
BsrFI RCCGGY 2 cut(s) 34, 749
BsrGI TGTACA 1 cut(s) 3027
BssAI RCCGGY 2 cut(s) 34, 749
BssHII GCGCGC 1 cut(s) 602
BssT1I CCWWGG 7 cut(s) 123, 144, 2229, 2367, 2441, 3220, 3546
Bst2UI CCWGG 5 cut(s) 1029, 1851, 2602, 3006, 3293
Bst6I CTCTTC 5 cut(s) 611, 679, 1106, 1254, 2011
BstAFI CTTAAG 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 3027
BstBAI YACGTR 3 cut(s) 570, 737, 873
BstC8I GCNNGC 6 cut(s) 561, 604, 1071, 1089, 1650, 2723
BstDSI CCRYGG 1 cut(s) 370
BstEII GGTNACC 2 cut(s) 1511, 3224
BstENI CCTNNNNNAGG 1 cut(s) 143
BstFNI CGCG 4 cut(s) 237, 284, 372, 604
BstHHI GCGC 4 cut(s) 237, 286, 604, 606
BstMCI CGRYCG 1 cut(s) 376
BstNI CCWGG 5 cut(s) 1029, 1851, 2602, 3006, 3293
BstPI GGTNACC 2 cut(s) 1511, 3224
BstSCI CCNGG 8 cut(s) 63, 181, 315, 1027, 1849, 2600, 3004, 3291
BstSFI CTRYAG 2 cut(s) 1416, 3432
BstSLI GKGCMC 2 cut(s) 2715, 3406
BstUI CGCG 4 cut(s) 237, 284, 372, 604
BstV2I GAAGAC 1 cut(s) 2211
BstX2I RGATCY 2 cut(s) 1115, 2296
BstYI RGATCY 2 cut(s) 1115, 2296
BstZI CGGCCG 1 cut(s) 373
Bsu15I ATCGAT 1 cut(s) 1782
Bsu36I CCTNAGG 1 cut(s) 3397
BsuI GTATCC 1 cut(s) 1619
BsuRI GGCC 9 cut(s) 128, 320, 375, 773, 1069, 1200, 1648, 2256, 2319
BsuTUI ATCGAT 1 cut(s) 1782
BtgI CCRYGG 1 cut(s) 370
BtgZI GCGATG 1 cut(s) 2744
BtsIMutI CAGTG 8 cut(s) 329, 417, 937, 1032, 2841, 2943, 3030, 3337
BveI ACCTGC 2 cut(s) 1524, 2772
Cac8I GCNNGC 6 cut(s) 561, 604, 1071, 1089, 1650, 2723
CaiI CAGNNNCTG 2 cut(s) 1034, 2819
CciI TCATGA 1 cut(s) 1831
CciNI GCGGCCGC 1 cut(s) 373
CfoI GCGC 4 cut(s) 237, 286, 604, 606
Cfr10I RCCGGY 2 cut(s) 34, 749
Cfr42I CCGCGG 1 cut(s) 373
ClaI ATCGAT 1 cut(s) 1782
Csp6I GTAC 5 cut(s) 1808, 2629, 2785, 2864, 3028
CspAI ACCGGT 1 cut(s) 34
CviQI GTAC 5 cut(s) 1808, 2629, 2785, 2864, 3028
DraI TTTAAA 3 cut(s) 705, 2850, 2985
DrdI GACNNNNNNGTC 1 cut(s) 766
DriI GACNNNNNGTC 2 cut(s) 1998, 2602
DseDI GACNNNNNNGTC 1 cut(s) 766
EaeI YGGCCR 5 cut(s) 126, 373, 771, 1067, 2254
EagI CGGCCG 1 cut(s) 373
Eam1104I CTCTTC 5 cut(s) 611, 679, 1106, 1254, 2011
Eam1105I GACNNNNNGTC 2 cut(s) 1998, 2602
EarI CTCTTC 5 cut(s) 611, 679, 1106, 1254, 2011
EciI GGCGGA 3 cut(s) 187, 193, 869
Ecl136II GAGCTC 2 cut(s) 70, 334
EclXI CGGCCG 1 cut(s) 373
Eco130I CCWWGG 7 cut(s) 123, 144, 2229, 2367, 2441, 3220, 3546
Eco24I GRGCYC 2 cut(s) 72, 336
Eco31I GGTCTC 3 cut(s) 154, 310, 3330
Eco47I GGWCC 7 cut(s) 136, 391, 626, 1637, 2132, 2233, 2977
Eco52I CGGCCG 1 cut(s) 373
Eco53kI GAGCTC 2 cut(s) 70, 334
Eco57I CTGAAG 7 cut(s) 441, 453, 486, 1305, 1803, 2888, 3257
Eco81I CCTNAGG 1 cut(s) 3397
Eco88I CYCGRG 1 cut(s) 329
Eco91I GGTNACC 2 cut(s) 1511, 3224
EcoICRI GAGCTC 2 cut(s) 70, 334
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO109I RGGNCCY 3 cut(s) 2132, 2233, 2977
EcoO65I GGTNACC 2 cut(s) 1511, 3224
EcoRI GAATTC 4 cut(s) 225, 1553, 3049, 3097
EcoRII CCWGG 5 cut(s) 1027, 1849, 2600, 3004, 3291
EcoT14I CCWWGG 7 cut(s) 123, 144, 2229, 2367, 2441, 3220, 3546
EcoT22I ATGCAT 1 cut(s) 1234
EcoT38I GRGCYC 2 cut(s) 72, 336
ErhI CCWWGG 7 cut(s) 123, 144, 2229, 2367, 2441, 3220, 3546
Esp3I CGTCTC 2 cut(s) 573, 3522
FalI AAGNNNNNCTT 5 cut(s) 2155, 2187, 2283, 2315, 3530
FaqI GGGAC 6 cut(s) 251, 375, 1779, 2145, 2385, 3371
FauI CCCGC 3 cut(s) 226, 277, 3396
FauNDI CATATG 1 cut(s) 2071
FbaI TGATCA 3 cut(s) 1912, 2086, 2827
FblI GTMKAC 1 cut(s) 955
FriOI GRGCYC 2 cut(s) 72, 336
FspBI CTAG 6 cut(s) 44, 560, 762, 983, 1088, 2802
GlaI GCGC 4 cut(s) 236, 285, 603, 605
GsaI CCCAGC 1 cut(s) 1647
GsuI CTGGAG 5 cut(s) 394, 1011, 1056, 2658, 3117
HaeIII GGCC 9 cut(s) 128, 320, 375, 773, 1069, 1200, 1648, 2256, 2319
HhaI GCGC 4 cut(s) 237, 286, 604, 606
Hin6I GCGC 4 cut(s) 235, 284, 602, 604
HinP1I GCGC 4 cut(s) 235, 284, 602, 604
HindIII AAGCTT 4 cut(s) 699, 2099, 2338, 3380
Hpy166II GTNNAC 8 cut(s) 32, 406, 956, 2713, 2864, 3028, 3030, 3404
Hpy8I GTNNAC 8 cut(s) 32, 406, 956, 2713, 2864, 3028, 3030, 3404
Hpy99I CGWCG 5 cut(s) 59, 278, 281, 401, 404
HpyCH4IV ACGT 5 cut(s) 491, 569, 736, 872, 2475
HpySE526I ACGT 5 cut(s) 491, 569, 736, 872, 2475
HspAI GCGC 4 cut(s) 235, 284, 602, 604
KflI GGGWCCC 1 cut(s) 2132
KpnI GGTACC 1 cut(s) 2788
Ksp22I TGATCA 3 cut(s) 1912, 2086, 2827
KspI CCGCGG 1 cut(s) 373
LmnI GCTCC 7 cut(s) 67, 75, 217, 344, 419, 2064, 3136
LweI GCATC 9 cut(s) 463, 709, 764, 1219, 1730, 1954, 2437, 3289, 3482
MaeI CTAG 6 cut(s) 44, 560, 762, 983, 1088, 2802
MaeII ACGT 5 cut(s) 491, 569, 736, 872, 2475
MbiI CCGCTC 1 cut(s) 212
MfeI CAATTG 3 cut(s) 812, 2522, 3465
MflI RGATCY 2 cut(s) 1115, 2296
MhlI GDGCHC 5 cut(s) 72, 336, 2715, 3366, 3406
MlsI TGGCCA 2 cut(s) 128, 2256
MluNI TGGCCA 2 cut(s) 128, 2256
MlyI GAGTC 6 cut(s) 37, 49, 182, 357, 2476, 2591
MmeI TCCRAC 2 cut(s) 1125, 1684
Mox20I TGGCCA 2 cut(s) 128, 2256
Mph1103I ATGCAT 1 cut(s) 1234
MroXI GAANNNNTTC 3 cut(s) 1375, 3097, 3270
MscI TGGCCA 2 cut(s) 128, 2256
MslI CAYNNNNRTG 1 cut(s) 2970
Msp20I TGGCCA 2 cut(s) 128, 2256
MspA1I CMGCKG 3 cut(s) 372, 1598, 1643
MspCI CTTAAG 1 cut(s) 518
MspR9I CCNGG 8 cut(s) 65, 183, 317, 1029, 1851, 2602, 3006, 3293
MunI CAATTG 3 cut(s) 812, 2522, 3465
Mva1269I GAATGC 4 cut(s) 2111, 2246, 2746, 3112
MvaI CCWGG 5 cut(s) 1029, 1851, 2602, 3006, 3293
MvnI CGCG 4 cut(s) 237, 284, 372, 604
NciI CCSGG 3 cut(s) 65, 183, 317
NdeI CATATG 1 cut(s) 2071
NheI GCTAGC 2 cut(s) 559, 1087
NmeAIII GCCGAG 1 cut(s) 700
NmuCI GTSAC 7 cut(s) 1486, 1875, 1884, 2359, 3034, 3224, 3332
NotI GCGGCCGC 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 1234
PaeR7I CTCGAG 1 cut(s) 329
PagI TCATGA 1 cut(s) 1831
PauI GCGCGC 1 cut(s) 602
PctI GAATGC 4 cut(s) 2111, 2246, 2746, 3112
PdmI GAANNNNTTC 3 cut(s) 1375, 3097, 3270
PflMI CCANNNNNTGG 1 cut(s) 1034
PfoI TCCNGGA 1 cut(s) 3004
PinAI ACCGGT 1 cut(s) 34
PleI GAGTC 6 cut(s) 36, 48, 182, 357, 2475, 2591
PpsI GAGTC 6 cut(s) 36, 48, 182, 357, 2475, 2591
Ppu21I YACGTR 3 cut(s) 570, 737, 873
PpuMI RGGWCCY 3 cut(s) 2132, 2233, 2977
PsiI TTATAA 1 cut(s) 3140
Psp124BI GAGCTC 2 cut(s) 72, 336
Psp5II RGGWCCY 3 cut(s) 2132, 2233, 2977
Psp6I CCWGG 5 cut(s) 1027, 1849, 2600, 3004, 3291
PspEI GGTNACC 2 cut(s) 1511, 3224
PspFI CCCAGC 1 cut(s) 1643
PspGI CCWGG 5 cut(s) 1027, 1849, 2600, 3004, 3291
PspPPI RGGWCCY 3 cut(s) 2132, 2233, 2977
PspXI VCTCGAGB 1 cut(s) 329
PstI CTGCAG 2 cut(s) 1420, 3436
PstNI CAGNNNCTG 2 cut(s) 1034, 2819
PsuI RGATCY 2 cut(s) 1115, 2296
PteI GCGCGC 1 cut(s) 602
PvuII CAGCTG 2 cut(s) 1598, 1643
RsaI GTAC 5 cut(s) 1809, 2630, 2786, 2865, 3029
RsaNI GTAC 5 cut(s) 1808, 2629, 2785, 2864, 3028
RseI CAYNNNNRTG 1 cut(s) 2970
SacI GAGCTC 2 cut(s) 72, 336
SacII CCGCGG 1 cut(s) 373
ScaI AGTACT 1 cut(s) 1809
SchI GAGTC 6 cut(s) 37, 49, 182, 357, 2476, 2591
ScrFI CCNGG 8 cut(s) 65, 183, 317, 1029, 1851, 2602, 3006, 3293
SduI GDGCHC 5 cut(s) 72, 336, 2715, 3366, 3406
SfaNI GCATC 9 cut(s) 463, 709, 764, 1219, 1730, 1954, 2437, 3289, 3482
SfcI CTRYAG 2 cut(s) 1416, 3432
Sfr274I CTCGAG 1 cut(s) 329
Sfr303I CCGCGG 1 cut(s) 373
SgrAI CRCCGGYG 1 cut(s) 34
SgrBI CCGCGG 1 cut(s) 373
SinI GGWCC 7 cut(s) 136, 391, 626, 1637, 2132, 2233, 2977
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 2970
SmlI CTYRAG 5 cut(s) 230, 248, 329, 356, 518
SmoI CTYRAG 5 cut(s) 230, 248, 329, 356, 518
SspI AATATT 1 cut(s) 1409
SspMI CTAG 6 cut(s) 44, 560, 762, 983, 1088, 2802
SstI GAGCTC 2 cut(s) 72, 336
StyD4I CCNGG 8 cut(s) 63, 181, 315, 1027, 1849, 2600, 3004, 3291
StyI CCWWGG 7 cut(s) 123, 144, 2229, 2367, 2441, 3220, 3546
TaiI ACGT 5 cut(s) 494, 572, 739, 875, 2478
TatI WGTACW 3 cut(s) 1807, 2863, 3027
TauI GCSGC 7 cut(s) 209, 212, 284, 375, 378, 566, 2902
TscAI CASTG 8 cut(s) 329, 424, 944, 1039, 2841, 2950, 3037, 3337
TseFI GTSAC 7 cut(s) 1486, 1875, 1884, 2359, 3034, 3224, 3332
Tsp45I GTSAC 7 cut(s) 1486, 1875, 1884, 2359, 3034, 3224, 3332
TspGWI ACGGA 2 cut(s) 2477, 2763
TspRI CASTG 8 cut(s) 329, 424, 944, 1039, 2841, 2950, 3037, 3337
Van91I CCANNNNNTGG 1 cut(s) 1034
Vha464I CTTAAG 1 cut(s) 518
VneI GTGCAC 2 cut(s) 2711, 3402
VpaK11BI GGWCC 7 cut(s) 136, 391, 626, 1637, 2132, 2233, 2977
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 6 cut(s) 225, 1553, 3049, 3097, 3249, 3285
XcmI CCANNNNNNNNNTGG 2 cut(s) 2558, 3289
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 955
XmnI GAANNNNTTC 3 cut(s) 1375, 3097, 3270
XspI CTAG 6 cut(s) 44, 560, 762, 983, 1088, 2802
ZrmI AGTACT 1 cut(s) 1809
Zsp2I ATGCAT 1 cut(s) 1234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.