RLG00000023097

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011992
Physical Location & Seq
Reverse (-)
18074172 .. 18074606
435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023097

Sequence Viewer

Length: 435 bp
ATGGAAGAATATCCAGAGGAAATGCGGAGTCCGCCGGTGAGTCTGGTCTCAGTCGTCGGCTGCTCGGAGCTCCACTCCTTCATCTCCACACACCTCCACTCCCTCGACCCTCCAATCAACACCTTGGCCTTGTCGGACCTCTCCAAGGTCTCTCTCCTCTTACCTTCCCCCAAGCCCAATCCCGCCGACTCCTCCTCCTCAGCCTCCGCCGCCGCTCCTCCTCCCGCCGGAATTTTGAAGCGCGATTGGCTTCTCAAGCACCGCACCAAAGTCCCCGCCGTTGTCGCCGCCCTCATCTCCTCGGATCGAGTCTCCGGCGACCTGACCCAGTGGCTCGAGCTCTGCTCCGAAATCGACAATCTCAAGGGGCTTATCCGCGGCCGGAGCATCAAATTGGTCATCGTCGTCGTCAACTCCCACTCCACTGGTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

145

Amino Acids

15.35

Weight (kDa)

6.5

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65950
fragaria_vesca FvH4_1g10000
malus_domestica MD15G1228100.v1.1
prunus_persica Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1
pyrus_communis pycom15g20290
rosa_chinensis RchiOBHm_Chr2g0096791
rosa_laevigata RLG00000016670 RLG00000023097
rosa_multiflora Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031
rosa_roxburghii Rroxscaffold_2G00145310
rosa_rugosa Rorug02G0060900
rosa_samantha Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700
rosa_wichuraiana Rw2G008370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 215
AccII CGCG 2 cut(s) 243, 378
AclWI GGATC 1 cut(s) 312
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 145, 227
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 2 cut(s) 70, 340
AluI AGCT 2 cut(s) 70, 340
Alw21I GWGCWC 2 cut(s) 72, 342
Alw26I GTCTC 3 cut(s) 52, 154, 316
AlwI GGATC 1 cut(s) 312
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 2 cut(s) 126, 379
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 1 cut(s) 231
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 2 cut(s) 72, 342
Bbv12I GWGCWC 2 cut(s) 72, 342
BbvCI CCTCAGC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 263
BcoDI GTCTC 3 cut(s) 52, 154, 316
BisI GCNGC 5 cut(s) 61, 210, 213, 288, 379
BlsI GCNGC 5 cut(s) 62, 211, 214, 289, 380
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 136
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 1 cut(s) 322
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 329, 361
Bpu10I CCTNAGC 1 cut(s) 199
BpuEI CTTGAG 2 cut(s) 239, 347
BsaI GGTCTC 2 cut(s) 52, 154
BsaJI CCNNGG 4 cut(s) 123, 144, 300, 376
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 179, 209, 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 227
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 328, 430
BseDI CCNNGG 4 cut(s) 123, 144, 300, 376
BseLI CCNNNNNNNGG 2 cut(s) 145, 227
BseMII CTCAG 2 cut(s) 63, 213
BseNI ACTGG 2 cut(s) 328, 430
BseRI GAGGAG 7 cut(s) 146, 181, 184, 187, 207, 210, 289
BseX3I CGGCCG 1 cut(s) 379
BseXI GCAGC 1 cut(s) 47
Bsh1236I CGCG 2 cut(s) 243, 378
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 2 cut(s) 128, 381
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 2 cut(s) 72, 342
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 4 cut(s) 35, 228, 315, 382
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 145, 227
BsmAI GTCTC 3 cut(s) 52, 154, 316
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 2 cut(s) 128, 381
Bso31I GGTCTC 2 cut(s) 52, 154
BsoBI CYCGRG 1 cut(s) 335
Bsp1286I GDGCHC 2 cut(s) 72, 342
Bsp143I GATC 1 cut(s) 304
BspANI GGCC 2 cut(s) 128, 381
BspCNI CTCAG 2 cut(s) 62, 212
BspFNI CGCG 2 cut(s) 243, 378
BspPI GGATC 1 cut(s) 312
BspTNI GGTCTC 2 cut(s) 52, 154
BsrBI CCGCTC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 2 cut(s) 328, 430
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 4 cut(s) 123, 144, 300, 376
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 2 cut(s) 123, 144
BstDEI CTNAG 2 cut(s) 49, 199
BstDSI CCRYGG 1 cut(s) 376
BstENI CCTNNNNNAGG 1 cut(s) 143
BstFNI CGCG 2 cut(s) 243, 378
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 3 cut(s) 52, 154, 316
BstMBI GATC 1 cut(s) 304
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 6 cut(s) 31, 209, 247, 256, 284, 384
BstUI CGCG 2 cut(s) 243, 378
BstV1I GCAGC 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 425
BstZI CGGCCG 1 cut(s) 379
BsuRI GGCC 2 cut(s) 128, 381
BtgI CCRYGG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 335, 423
CfoI GCGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 136
Cfr42I CCGCGG 1 cut(s) 379
DdeI CTNAG 2 cut(s) 49, 199
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 379
EagI CGGCCG 1 cut(s) 379
EciI GGCGGA 2 cut(s) 21, 196
Ecl136II GAGCTC 2 cut(s) 70, 340
EclXI CGGCCG 1 cut(s) 379
Eco130I CCWWGG 2 cut(s) 123, 144
Eco24I GRGCYC 2 cut(s) 72, 342
Eco31I GGTCTC 2 cut(s) 52, 154
Eco47I GGWCC 1 cut(s) 136
Eco52I CGGCCG 1 cut(s) 379
Eco53kI GAGCTC 2 cut(s) 70, 340
Eco88I CYCGRG 1 cut(s) 335
EcoICRI GAGCTC 2 cut(s) 70, 340
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 123, 144
EcoT38I GRGCYC 2 cut(s) 72, 342
ErhI CCWWGG 2 cut(s) 123, 144
FaqI GGGAC 1 cut(s) 257
FauI CCCGC 3 cut(s) 190, 232, 283
Fnu4HI GCNGC 5 cut(s) 61, 210, 213, 288, 379
FriOI GRGCYC 2 cut(s) 72, 342
Fsp4HI GCNGC 5 cut(s) 61, 210, 213, 288, 379
GlaI GCGC 1 cut(s) 242
GluI GCNGC 5 cut(s) 61, 210, 213, 288, 379
HaeIII GGCC 2 cut(s) 128, 381
HapII CCGG 4 cut(s) 35, 228, 315, 382
HhaI GCGC 1 cut(s) 243
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 4 cut(s) 28, 40, 188, 309
HpaII CCGG 4 cut(s) 35, 228, 315, 382
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 4 cut(s) 67, 136, 304, 349
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 3 cut(s) 59, 407, 410
HpyAV CCTTC 2 cut(s) 88, 174
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 209, 247, 256, 284, 384
HpyF3I CTNAG 2 cut(s) 49, 199
HspAI GCGC 1 cut(s) 241
KspI CCGCGG 1 cut(s) 379
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 5 cut(s) 67, 75, 220, 350, 384
LpnPI CCDG 9 cut(s) 27, 29, 48, 241, 328, 335, 341, 395, 411
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 396
MalI GATC 1 cut(s) 306
MbiI CCGCTC 1 cut(s) 215
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 2 cut(s) 72, 342
MluCI AATT 2 cut(s) 231, 392
MlyI GAGTC 4 cut(s) 37, 49, 182, 318
MmeI TCCRAC 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 378
MspI CCGG 4 cut(s) 35, 228, 315, 382
MvnI CGCG 2 cut(s) 243, 378
MwoI GCNNNNNNNGC 6 cut(s) 31, 209, 247, 256, 284, 384
NdeII GATC 1 cut(s) 304
PaeR7I CTCGAG 1 cut(s) 335
PkrI GCNGC 5 cut(s) 62, 211, 214, 289, 380
PleI GAGTC 4 cut(s) 36, 48, 182, 317
PpsI GAGTC 4 cut(s) 36, 48, 182, 317
Psp124BI GAGCTC 2 cut(s) 72, 342
PspPI GGNCC 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 335
SacI GAGCTC 2 cut(s) 72, 342
SacII CCGCGG 1 cut(s) 379
SatI GCNGC 5 cut(s) 61, 210, 213, 288, 379
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 4 cut(s) 37, 49, 182, 318
SduI GDGCHC 2 cut(s) 72, 342
SetI ASST 8 cut(s) 72, 96, 125, 141, 150, 166, 324, 342
SfaNI GCATC 1 cut(s) 396
Sfr274I CTCGAG 1 cut(s) 335
Sfr303I CCGCGG 1 cut(s) 379
SgrAI CRCCGGYG 1 cut(s) 34
SgrBI CCGCGG 1 cut(s) 379
SinI GGWCC 1 cut(s) 136
SlaI CTCGAG 1 cut(s) 335
SmlI CTYRAG 3 cut(s) 254, 335, 362
SmoI CTYRAG 3 cut(s) 254, 335, 362
Sse9I AATT 2 cut(s) 231, 392
SstI GAGCTC 2 cut(s) 72, 342
StyI CCWWGG 2 cut(s) 123, 144
TaqI TCGA 4 cut(s) 105, 307, 336, 354
TasI AATT 2 cut(s) 231, 392
TauI GCSGC 4 cut(s) 212, 215, 290, 381
TscAI CASTG 2 cut(s) 335, 430
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 70
TspRI CASTG 2 cut(s) 335, 430
VpaK11BI GGWCC 1 cut(s) 136
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 231
XhoI CTCGAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.