Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

26385348 .. 26387447

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAAAGCCGACCGGGAGTTTTGGTCGTCGGATCCTCTGGCGTCGGCAAGCGCACCCTCCTCTCTCGATTGCTCTCTGTGGAATTTGAGGATTCATCGGAGTCATCATCTCAAACAGAAGTTCATGGCTGGACGATTAACACTAAGTATTACACTGCGGATGTTTCTGTATGTATATCACATATTTGCGATGAATACTCTCTACCCAATCTCCCTAACTCACATCCACTGGTGGCGTTAGTTATGGTCTTCGACTTGAGTGAGCTGTCAACCCTTGTTGCTCTTCAAGACTGGGTTTCTCATACTGACATCAACAGTTTTGATATATTGTTGTGCATTGGTAACAAAGTAGATCGTGTCCCTCATCACCTTGCTCATGATGAATATAGACGGCGCCTTTTGAAGGCATCAGACCCCTCTAGAGATCTGTATTCGGACATTGATGACTTTGGGATCTCCGAAACTGAAGGAAGCAGCTTGTTGGGAAGTGAAGATGCATCACTAGATATCAGGGGAGCATGTCTTGAGTGGTGCTCTGAGAATAACATTGAGTTCATTGAGGCTTGTGCCTCTAATCCTGATTTTGACAAGTGTTTATCAGTCGATGGGGATTCTCAAGGGGTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAACCTGTGTTACCTCAAGGGGAAGAGTTGTCAGAAGAAGAATCTGAATATGAATTGGAGTATGAAGTGCTATCAGCAGGCTCAGGTGATCCATGGGATAATATTGAAGAAAGATGGGTTTCTGCAAGTGAAACGCATTCACATGCCGATGCTGGCGGATCCACTTCACAGGAAAACCTCCATGTAGAAAATAGTATGGTGAAACCGAATAAAGTTGATGAAGAGCTGCTGCCGTCAGGGTCAAGGTTAGAGCTGCAAAATGACACTGACAGAGCAATAGTAACAGATGAAAAACCTTTGGGCACAGAAAATGAAAAATGTTACGAGTTTGAAGATGTGGAACAGTTGATGTCAGAAATAGGAAACATCCGGGACAACTTGCGATTGATGCCTGATTTCCAGAGGAGGGAAATAGCTGCAAATTTAGCGATGAAAATGGCTTCCATGTTTGGAGGTGACACTGATGACGAGGAAGAACCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

393

Amino Acids

43.69

Weight (kDa)

4.29

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_binding	PF10199	204 - 376	7e-15	Alpha and gamma adaptin binding protein p34

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AciI	CCGC	2 cut(s)	158, 852
AclWI	GGATC	6 cut(s)	27, 40, 461, 779, 849, 862
AcsI	RAATTY	2 cut(s)	83, 1117
AcuI	CTGAAG	1 cut(s)	486
AcyI	GRCGYC	2 cut(s)	42, 394
AfiI	CCNNNNNNNGG	2 cut(s)	403, 1102
AgsI	TTSAA	5 cut(s)	287, 403, 626, 803, 1028
AjnI	CCWGG	1 cut(s)	661
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	5 cut(s)	265, 477, 922, 949, 1112
AluI	AGCT	5 cut(s)	265, 477, 922, 949, 1112
Alw21I	GWGCWC	2 cut(s)	536, 643
AlwI	GGATC	6 cut(s)	27, 40, 461, 779, 849, 862
AoxI	GGCC	1 cut(s)	659
ApeKI	GCWGC	5 cut(s)	474, 922, 925, 949, 1112
ApoI	RAATTY	2 cut(s)	83, 1117
AspLEI	GCGC	2 cut(s)	54, 396
AsuC2I	CCSGG	2 cut(s)	15, 1067
AsuHPI	GGTGA	5 cut(s)	359, 695, 794, 907, 1163
BaeGI	GKGCMC	1 cut(s)	1001
BamHI	GGATCC	2 cut(s)	32, 854
BanI	GGYRCC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	2 cut(s)	536, 643
BbvI	GCAGC	5 cut(s)	486, 909, 912, 936, 1099
BccI	CCATC	2 cut(s)	599, 804
BceAI	ACGGC	2 cut(s)	407, 913
BciT130I	CCWGG	1 cut(s)	663
BcnI	CCSGG	2 cut(s)	15, 1067
BfaI	CTAG	2 cut(s)	420, 503
BfoI	RGCGCY	1 cut(s)	397
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	5 cut(s)	475, 923, 926, 950, 1113
BlsI	GCNGC	5 cut(s)	476, 924, 927, 951, 1114
Bme1390I	CCNGG	3 cut(s)	15, 663, 1067
BmiI	GGNNCC	3 cut(s)	34, 395, 856
BmrFI	CCNGG	3 cut(s)	15, 663, 1067
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	5 cut(s)	416, 484, 506, 835, 1074
BmuI	ACTGGG	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
Bpu10I	CCTNAGC	1 cut(s)	778
BpuEI	CTTGAG	4 cut(s)	277, 545, 600, 696
BpuMI	CCSGG	2 cut(s)	15, 1067
BsaHI	GRCGYC	2 cut(s)	42, 394
BsaJI	CCNNGG	2 cut(s)	662, 788
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 195, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 1102
Bse1I	ACTGG	2 cut(s)	234, 296
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	2 cut(s)	662, 788
BseGI	GGATG	4 cut(s)	166, 223, 672, 1062
BseLI	CCNNNNNNNGG	2 cut(s)	403, 1102
BseMII	CTCAG	3 cut(s)	528, 792, 1167
BseNI	ACTGG	2 cut(s)	234, 296
BseRI	GAGGAG	2 cut(s)	50, 1114
BseSI	GKGCMC	1 cut(s)	1001
BseXI	GCAGC	5 cut(s)	486, 909, 912, 936, 1099
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	661
BshNI	GGYRCC	1 cut(s)	393
BsiEI	CGRYCG	1 cut(s)	14
BsiHKAI	GWGCWC	2 cut(s)	536, 643
BsiSI	CCGG	2 cut(s)	14, 1066
BslFI	GGGAC	2 cut(s)	344, 1082
BslI	CCNNNNNNNGG	2 cut(s)	403, 1102
BsmFI	GGGAC	2 cut(s)	344, 1082
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	1 cut(s)	661
Bsp1286I	GDGCHC	3 cut(s)	536, 643, 1001
Bsp143I	GATC	6 cut(s)	32, 352, 424, 453, 784, 854
Bsp19I	CCATGG	1 cut(s)	788
BspACI	CCGC	2 cut(s)	158, 852
BspANI	GGCC	1 cut(s)	661
BspCNI	CTCAG	3 cut(s)	529, 791, 1168
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	3 cut(s)	34, 395, 856
BspPI	GGATC	6 cut(s)	27, 40, 461, 779, 849, 862
BspQI	GCTCTTC	2 cut(s)	288, 912
BspT107I	GGYRCC	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	234, 296
BssECI	CCNNGG	2 cut(s)	662, 788
BssMI	GATC	6 cut(s)	32, 352, 424, 453, 784, 854
BssNI	GRCGYC	2 cut(s)	42, 394
BssT1I	CCWWGG	1 cut(s)	788
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	317, 1041
Bst6I	CTCTTC	3 cut(s)	288, 714, 912
BstACI	GRCGYC	2 cut(s)	42, 394
BstC8I	GCNNGC	3 cut(s)	50, 775, 850
BstDEI	CTNAG	4 cut(s)	144, 537, 778, 1176
BstDSI	CCRYGG	1 cut(s)	788
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	4 cut(s)	166, 223, 672, 1062
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	2 cut(s)	54, 396
BstKTI	GATC	6 cut(s)	35, 355, 427, 456, 787, 857
BstMBI	GATC	6 cut(s)	32, 352, 424, 453, 784, 854
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	3 cut(s)	647, 1084, 1121
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	2 cut(s)	522, 842
BstSCI	CCNGG	3 cut(s)	13, 661, 1065
BstSLI	GKGCMC	1 cut(s)	1001
BstV1I	GCAGC	5 cut(s)	486, 909, 912, 936, 1099
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	4 cut(s)	32, 424, 453, 854
BstYI	RGATCY	4 cut(s)	32, 424, 453, 854
BsuRI	GGCC	1 cut(s)	661
BtgI	CCRYGG	1 cut(s)	788
BtgZI	GCGATG	2 cut(s)	204, 1139
BtsCI	GGATG	4 cut(s)	166, 223, 672, 1062
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	4 cut(s)	153, 227, 960, 1155
Cac8I	GCNNGC	3 cut(s)	50, 775, 850
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	2 cut(s)	54, 396
CseI	GACGC	1 cut(s)	31
CviAII	CATG	7 cut(s)	125, 377, 519, 789, 839, 878, 1141
DdeI	CTNAG	4 cut(s)	144, 537, 778, 1176
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	6 cut(s)	34, 354, 426, 455, 786, 856
DpnII	GATC	6 cut(s)	32, 352, 424, 453, 784, 854
Eam1104I	CTCTTC	3 cut(s)	288, 714, 912
EarI	CTCTTC	3 cut(s)	288, 714, 912
EciI	GGCGGA	1 cut(s)	867
Eco130I	CCWWGG	1 cut(s)	788
Eco32I	GATATC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	661
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	788
EcoT22I	ATGCAT	1 cut(s)	499
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	788
FaeI	CATG	7 cut(s)	128, 380, 522, 792, 842, 881, 1144
FaqI	GGGAC	2 cut(s)	344, 1082
FatI	CATG	7 cut(s)	124, 376, 518, 788, 838, 877, 1140
FauNDI	CATATG	1 cut(s)	654
Fnu4HI	GCNGC	5 cut(s)	475, 923, 926, 950, 1113
FokI	GGATG	4 cut(s)	173, 210, 679, 1049
Fsp4HI	GCNGC	5 cut(s)	475, 923, 926, 950, 1113
FspBI	CTAG	2 cut(s)	420, 503
GlaI	GCGC	2 cut(s)	53, 395
GluI	GCNGC	5 cut(s)	475, 923, 926, 950, 1113
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	661
HapII	CCGG	2 cut(s)	14, 1066
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	2 cut(s)	54, 396
Hin1I	GRCGYC	2 cut(s)	42, 394
Hin1II	CATG	7 cut(s)	128, 380, 522, 792, 842, 881, 1144
Hin6I	GCGC	2 cut(s)	52, 394
HinP1I	GCGC	2 cut(s)	52, 394
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	5 cut(s)	92, 101, 611, 670, 737
HpaII	CCGG	2 cut(s)	14, 1066
HphI	GGTGA	5 cut(s)	359, 695, 794, 907, 1163
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188III	TCNNGA	7 cut(s)	66, 287, 377, 420, 524, 578, 1096
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	2 cut(s)	32, 47
HpyAV	CCTTC	2 cut(s)	397, 461
HpyCH4III	ACNGT	2 cut(s)	317, 1041
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	5 cut(s)	336, 497, 821, 952, 1115
HpyF10VI	GCNNNNNNNGC	3 cut(s)	647, 1084, 1121
HpyF3I	CTNAG	4 cut(s)	144, 537, 778, 1176
HpySE526I	ACGT	1 cut(s)	628
Hsp92I	GRCGYC	2 cut(s)	42, 394
Hsp92II	CATG	7 cut(s)	128, 380, 522, 792, 842, 881, 1144
HspAI	GCGC	2 cut(s)	52, 394
KasI	GGCGCC	1 cut(s)	393
Kzo9I	GATC	6 cut(s)	32, 352, 424, 453, 784, 854
LguI	GCTCTTC	2 cut(s)	288, 912
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	5 cut(s)	486, 909, 912, 936, 1099
LweI	GCATC	5 cut(s)	416, 484, 506, 835, 1074
MaeI	CTAG	2 cut(s)	420, 503
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	5 cut(s)	341, 705, 976, 1016, 1151
MalI	GATC	6 cut(s)	34, 354, 426, 455, 786, 856
MboI	GATC	6 cut(s)	32, 352, 424, 453, 784, 854
MflI	RGATCY	4 cut(s)	32, 424, 453, 854
MhlI	GDGCHC	3 cut(s)	536, 643, 1001
MluCI	AATT	3 cut(s)	83, 749, 1117
Mly113I	GGCGCC	1 cut(s)	394
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	10
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	2 cut(s)	837, 843
MspI	CCGG	2 cut(s)	14, 1066
MspR9I	CCNGG	3 cut(s)	15, 663, 1067
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	3 cut(s)	647, 1084, 1121
NarI	GGCGCC	1 cut(s)	394
NciI	CCSGG	2 cut(s)	15, 1067
NcoI	CCATGG	1 cut(s)	788
NdeI	CATATG	1 cut(s)	654
NdeII	GATC	6 cut(s)	32, 352, 424, 453, 784, 854
NlaIII	CATG	7 cut(s)	128, 380, 522, 792, 842, 881, 1144
NlaIV	GGNNCC	3 cut(s)	34, 395, 856
NmuCI	GTSAC	1 cut(s)	1151
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	2 cut(s)	522, 842
PagI	TCATGA	1 cut(s)	376
PciSI	GCTCTTC	2 cut(s)	288, 912
PctI	GAATGC	1 cut(s)	832
PfeI	GAWTC	4 cut(s)	92, 611, 670, 737
PfoI	TCCNGGA	1 cut(s)	1065
PkrI	GCNGC	5 cut(s)	476, 924, 927, 951, 1114
PleI	GAGTC	1 cut(s)	109
PluTI	GGCGCC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	3 cut(s)	34, 395, 856
PsrI	GAACNNNNNNTAC	2 cut(s)	690, 722
PsuI	RGATCY	4 cut(s)	32, 424, 453, 854
RseI	CAYNNNNRTG	2 cut(s)	837, 843
SapI	GCTCTTC	2 cut(s)	288, 912
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	5 cut(s)	475, 923, 926, 950, 1113
Sau3AI	GATC	6 cut(s)	32, 352, 424, 453, 784, 854
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	3 cut(s)	15, 663, 1067
SduI	GDGCHC	3 cut(s)	536, 643, 1001
SfaNI	GCATC	5 cut(s)	416, 484, 506, 835, 1074
SfoI	GGCGCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	837, 843
SmlI	CTYRAG	4 cut(s)	256, 524, 615, 711
SmoI	CTYRAG	4 cut(s)	256, 524, 615, 711
Sse9I	AATT	3 cut(s)	83, 749, 1117
SsiI	CCGC	2 cut(s)	158, 852
SspDI	GGCGCC	1 cut(s)	393
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	2 cut(s)	420, 503
StyD4I	CCNGG	3 cut(s)	13, 661, 1065
StyI	CCWWGG	1 cut(s)	788
TaaI	ACNGT	2 cut(s)	317, 1041
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	3 cut(s)	67, 252, 603
TasI	AATT	3 cut(s)	83, 749, 1117
TfiI	GAWTC	4 cut(s)	92, 611, 670, 737
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	4 cut(s)	160, 234, 967, 1162
TseFI	GTSAC	1 cut(s)	1151
TseI	GCWGC	5 cut(s)	474, 922, 925, 949, 1112
Tsp45I	GTSAC	1 cut(s)	1151
TspRI	CASTG	4 cut(s)	160, 234, 967, 1162
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	2 cut(s)	83, 1117
XbaI	TCTAGA	1 cut(s)	419
XceI	RCATGY	2 cut(s)	522, 842
XspI	CTAG	2 cut(s)	420, 503
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.