Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

9176121 .. 9177516

Gene Structure 1396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1113000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAAGATGGAATATCTCTACAAAGTACTACACAGCTGGTGTTTCAGTATGGATGGCTCATCACCATGACGAATTTTTGATAGTCCCTCCCAACTTGTCGTCTCTGTCTGCGCTTCAGAAATGGGTATCTCAAACTGATCTTCAAAAGTTCGATAGACTAGTGTGCATAGGGAATAAGGTTGATCTTGTTCCGGGTCACCCAGTTCATACCGAATATAGAAGACGACTGCAGAAGCTTGGAGACCCATTTGCTGATGACGGTCCAGGGTTCACTGCGTATGGAATCTCCGAGACTGAAGGAAGCAGTTTATTGGGGGATGATGAGCCATATTGGGAGGCTAGGCACACATGTTTGGAATGGTGCAATGAGCATAACATTGAGTTTGTTGAAGCTTGTGCTTCAAATGCTGATTTTGACAAATGTAAGGTAGCCCTTCTTTCTGACTTCTTGTTTATGGCAAGTTTTATACGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

160

Amino Acids

18.2

Weight (kDa)

5.27

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	2 cut(s)	101, 318
AfaI	GTAC	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	146, 392, 405
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	3 cut(s)	38, 238, 395
AluI	AGCT	3 cut(s)	38, 238, 395
Alw26I	GTCTC	3 cut(s)	108, 237, 287
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	56, 191
AvaII	GGWCC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	229
BccI	CCATC	2 cut(s)	3, 49
BciT130I	CCWGG	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	3 cut(s)	108, 237, 287
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	2 cut(s)	161, 342
BfmI	CTRYAG	1 cut(s)	230
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	2 cut(s)	195, 267
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	2 cut(s)	195, 267
BmrI	ACTGGG	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	60, 325
BseMI	GCAATG	1 cut(s)	373
BseNI	ACTGG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	71
BsmAI	GTCTC	3 cut(s)	108, 237, 287
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	71
Bso31I	GGTCTC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	139, 184
BspMAI	CTGCAG	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	139, 184
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	263
BstEII	GGTNACC	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	60, 325
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	2 cut(s)	142, 187
BstMAI	GTCTC	3 cut(s)	108, 237, 287
BstMBI	GATC	2 cut(s)	139, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	193, 265
BstSFI	CTRYAG	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	60, 325
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	68, 351
CviJI	RGCY	7 cut(s)	38, 59, 238, 328, 341, 395, 434
CviKI_1	RGCY	7 cut(s)	38, 59, 238, 328, 341, 395, 434
CviQI	GTAC	1 cut(s)	28
DpnI	GATC	2 cut(s)	141, 186
DpnII	GATC	2 cut(s)	139, 184
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	2 cut(s)	101, 318
Eco91I	GGTNACC	1 cut(s)	197
EcoO65I	GGTNACC	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	2 cut(s)	71, 354
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	67, 350
FokI	GGATG	2 cut(s)	67, 332
FspBI	CTAG	2 cut(s)	161, 342
GlaI	GCGC	1 cut(s)	114
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	71, 354
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HindIII	AAGCTT	2 cut(s)	236, 393
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	2 cut(s)	56, 191
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	3 cut(s)	120, 292, 445
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	3 cut(s)	293, 446, 468
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	168, 232, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	71, 354
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	139, 184
LpnPI	CCDG	5 cut(s)	24, 207, 216, 252, 279
MaeI	CTAG	2 cut(s)	161, 342
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	141, 186
MboI	GATC	2 cut(s)	139, 184
MboII	GAAGA	2 cut(s)	134, 234
MluCI	AATT	1 cut(s)	74
MnlI	CCTC	2 cut(s)	99, 331
MslI	CAYNNNNRTG	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	195, 267
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	407
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	2 cut(s)	139, 184
NlaIII	CATG	2 cut(s)	71, 354
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	354
PciI	ACATGT	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	285
PscI	ACATGT	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	265
PspEI	GGTNACC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	66
Sau3AI	GATC	2 cut(s)	139, 184
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	195, 267
SetI	ASST	6 cut(s)	40, 183, 240, 397, 432, 479
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	66
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	1 cut(s)	74
SspMI	CTAG	2 cut(s)	161, 342
StyD4I	CCNGG	2 cut(s)	193, 265
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	74
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	285
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	354
XspI	CTAG	2 cut(s)	161, 342
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.