Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386225.1

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Reverse (-)

227 .. 870

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgtggcctggaatgattctgaaaacaggcgataagattactgaaccatcattacctgaaagagaagactcgtcggaagaagaatctgattatgaattcgagtatgatgtcctatcggcgggttcagctgaaccttttgatgacacagataaaggatggggatgggtttctgccagtgatgttgctggaacctcagaaatgggaagactggatgctcataataatcttgtccaagagaatggaactactagcgctaatgaggagctgcatacttctacatcaatggctgcattacatagtgatatcaacaaggaagtagtggtgctcaatgcagaagaacctgaccgcgacacagaacttgatcaacgccaagatttagacgaggataaacctttcgaaattgaggatttggaacagttgatgtctgaaatcgggaacatgcgtgacagcttgagattgatgcctgattttcaaagacgagaaatggctgcaaaactggccatgaaaatggcatccatgtttgggggcgagagtgataatgaacaggaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

184

Amino Acids

20.65

Weight (kDa)

4.08

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	348
AciI	CCGC	2 cut(s)	119, 346
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	95
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	118, 522
AgsI	TTSAA	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	3 cut(s)	128, 265, 450
AluI	AGCT	3 cut(s)	128, 265, 450
Alw21I	GWGCWC	1 cut(s)	327
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	2 cut(s)	5, 498
ApeKI	GCWGC	3 cut(s)	265, 287, 488
ApoI	RAATTY	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	500
BbsI	GAAGAC	2 cut(s)	72, 211
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	252, 274, 475
BccI	CCATC	3 cut(s)	55, 150, 156
BciT130I	CCWGG	1 cut(s)	9
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	255
BisI	GCNGC	3 cut(s)	266, 288, 489
BlsI	GCNGC	3 cut(s)	267, 289, 490
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	3 cut(s)	202, 450, 521
BpiI	GAAGAC	2 cut(s)	72, 211
Bpu14I	TTCGAA	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 522
Bse1I	ACTGG	3 cut(s)	174, 213, 501
BseBI	CCWGG	1 cut(s)	9
BseGI	GGATG	4 cut(s)	161, 167, 217, 512
BseLI	CCNNNNNNNGG	2 cut(s)	118, 522
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	3 cut(s)	174, 213, 501
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	3 cut(s)	252, 274, 475
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	7, 500
BsiHKAI	GWGCWC	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	118, 522
BsnI	GGCC	2 cut(s)	7, 500
Bsp119I	TTCGAA	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	2 cut(s)	119, 346
BspANI	GGCC	2 cut(s)	7, 500
BspCNI	CTCAG	1 cut(s)	206
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	190
BspT104I	TTCGAA	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	174, 213, 501
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	193
BstF5I	GGATG	4 cut(s)	161, 167, 217, 512
BstFNI	CGCG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 497
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	1 cut(s)	7
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	252, 274, 475
BstV2I	GAAGAC	2 cut(s)	72, 211
BstXI	CCANNNNNNTGG	2 cut(s)	239, 508
BsuRI	GGCC	2 cut(s)	7, 500
BtsCI	GGATG	4 cut(s)	161, 167, 217, 512
BtsIMutI	CAGTG	1 cut(s)	181
CfoI	GCGC	1 cut(s)	254
CviAII	CATG	3 cut(s)	439, 502, 517
CviJI	RGCY	7 cut(s)	7, 128, 265, 287, 450, 488, 500
CviKI_1	RGCY	7 cut(s)	7, 128, 265, 287, 450, 488, 500
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	498
Eco32I	GATATC	1 cut(s)	304
Eco47III	AGCGCT	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	304
FaeI	CATG	3 cut(s)	442, 505, 520
FaiI	YATR	8 cut(s)	93, 105, 219, 270, 297, 440, 503, 518
FatI	CATG	3 cut(s)	438, 501, 516
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	266, 288, 489
FokI	GGATG	4 cut(s)	168, 174, 224, 499
Fsp4HI	GCNGC	3 cut(s)	266, 288, 489
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	3 cut(s)	266, 288, 489
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	7, 500
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	442, 505, 520
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	3 cut(s)	16, 68, 83
Hpy188I	TCNGA	5 cut(s)	21, 76, 88, 196, 427
Hpy188III	TCNNGA	1 cut(s)	433
Hpy99I	CGWCG	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4V	TGCA	4 cut(s)	268, 290, 332, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 497
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	442, 505, 520
HspAI	GCGC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	3 cut(s)	252, 274, 475
LweI	GCATC	3 cut(s)	202, 450, 521
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	5 cut(s)	77, 89, 92, 216, 347
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	2 cut(s)	95, 399
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	202, 253, 376, 397
Mox20I	TGGCCA	1 cut(s)	500
MscI	TGGCCA	1 cut(s)	500
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	125, 497
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	3 cut(s)	442, 505, 520
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	443
NspI	RCATGY	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	16, 83
PkrI	GCNGC	3 cut(s)	267, 289, 490
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	190
PsrI	GAACNNNNNNTAC	2 cut(s)	36, 68
PvuII	CAGCTG	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	506
SatI	GCNGC	3 cut(s)	266, 288, 489
Sau3AI	GATC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	8 cut(s)	58, 130, 136, 194, 267, 343, 394, 452
SfaNI	GCATC	3 cut(s)	202, 450, 521
SfuI	TTCGAA	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	2 cut(s)	95, 399
SsiI	CCGC	2 cut(s)	119, 346
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	417
TaqI	TCGA	2 cut(s)	99, 396
TasI	AATT	2 cut(s)	95, 399
TfiI	GAWTC	2 cut(s)	16, 83
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	3 cut(s)	265, 287, 488
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	3 cut(s)	108, 518, 555
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	442
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.