Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

9177720 .. 9184307

Gene Structure 6588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1113100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGGCCTGGAATGATTCTGAAATCAGGCGATAAGATTGCTGAACCGTCATTACCTGAAAGAGGAGTAGGTTCAGCTGATCCATTTGATGACACGGAAGAATGGGTTTCTGCAAATGGTTTTGCTGGACCTTCAGATATGCGAGGACTGGCTGCTCAAAGTAATCTTGTCCTAGAATGCAAACAAGAGAATGGACCCAGTTCTAATAAGGAGGTTCCCCATGCCTCGAACTTGACAGCCGCGTTGGATGATAGTATTAGCAAAGGAGTATCCAGTGCAGAAGAACCTGAACAGGACACAGACCATGACCAAGCCCCAGAACCGGATGAGGGTACGAATTTTGAATTTGAAGATTTGGAACAGTTGATGTCTGAGATTGGGAACATGCGCGACAGTTCAAGATTGCTGCCGGATTGTCAGAGAAGAGATATGGCTGCAAAGCTGGCCATGAAAATGGCTACCATGTTTGGGGGTGGCAGTGATGGTGAAGTGGAAAGTATCGGCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

170

Amino Acids

18.12

Weight (kDa)

4.18

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_binding	PF10199	1 - 150	1.2e-11	Alpha and gamma adaptin binding protein p34

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	242, 390
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	2 cut(s)	337, 344
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	4 cut(s)	62, 322, 329, 468
AgsI	TTSAA	3 cut(s)	344, 350, 399
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	2 cut(s)	77, 442
AluI	AGCT	2 cut(s)	77, 442
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	2 cut(s)	5, 444
ApeKI	GCWGC	3 cut(s)	152, 406, 434
ApoI	RAATTY	2 cut(s)	337, 344
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	128, 194
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	2 cut(s)	128, 194
BalI	TGGCCA	1 cut(s)	446
BbvI	GCAGC	3 cut(s)	139, 393, 421
BccI	CCATC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	9
BciVI	GTATCC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	280
BisI	GCNGC	4 cut(s)	153, 240, 407, 435
BlsI	GCNGC	4 cut(s)	154, 241, 408, 436
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	2 cut(s)	128, 194
BmgT120I	GGNCC	2 cut(s)	128, 194
BmiI	GGNNCC	2 cut(s)	196, 216
BmrFI	CCNGG	1 cut(s)	9
BmrI	ACTGGG	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 322, 329, 468
Bse1I	ACTGG	3 cut(s)	153, 198, 273
BseBI	CCWGG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	253, 331
BseLI	CCNNNNNNNGG	4 cut(s)	62, 322, 329, 468
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	3 cut(s)	153, 198, 273
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	139, 393, 421
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	2 cut(s)	242, 390
BshFI	GGCC	2 cut(s)	7, 446
BsiSI	CCGG	2 cut(s)	323, 410
BslI	CCNNNNNNNGG	4 cut(s)	62, 322, 329, 468
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	7, 446
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	2 cut(s)	7, 446
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	2 cut(s)	242, 390
BspLI	GGNNCC	2 cut(s)	196, 216
BspPI	GGATC	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	153, 198, 273
BssMI	GATC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	3 cut(s)	48, 363, 395
Bst6I	CTCTTC	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	253, 331
BstFNI	CGCG	2 cut(s)	242, 390
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	7
BstUI	CGCG	2 cut(s)	242, 390
BstV1I	GCAGC	3 cut(s)	139, 393, 421
BstXI	CCANNNNNNTGG	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	7, 446
BtsCI	GGATG	2 cut(s)	253, 331
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	2 cut(s)	280, 484
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	2 cut(s)	128, 194
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	5 cut(s)	221, 305, 385, 448, 463
CviJI	RGCY	9 cut(s)	7, 77, 152, 239, 314, 434, 442, 446, 458
CviKI_1	RGCY	9 cut(s)	7, 77, 152, 239, 314, 434, 442, 446, 458
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	444
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	128, 194
Eco57I	CTGAAG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	7
FaeI	CATG	5 cut(s)	224, 308, 388, 451, 466
FaiI	YATR	7 cut(s)	140, 222, 306, 386, 431, 449, 464
FatI	CATG	5 cut(s)	220, 304, 384, 447, 462
Fnu4HI	GCNGC	4 cut(s)	153, 240, 407, 435
FokI	GGATG	2 cut(s)	260, 338
Fsp4HI	GCNGC	4 cut(s)	153, 240, 407, 435
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	4 cut(s)	153, 240, 407, 435
HaeIII	GGCC	2 cut(s)	7, 446
HapII	CCGG	2 cut(s)	323, 410
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	5 cut(s)	224, 308, 388, 451, 466
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	323, 410
HphI	GGTGA	1 cut(s)	497
Hpy188I	TCNGA	4 cut(s)	21, 136, 373, 420
Hpy188III	TCNNGA	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	3 cut(s)	48, 363, 395
HpyCH4V	TGCA	4 cut(s)	113, 180, 278, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	5 cut(s)	224, 308, 388, 451, 466
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	79
Lsp1109I	GCAGC	3 cut(s)	139, 393, 421
MaeI	CTAG	1 cut(s)	173
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	4 cut(s)	110, 293, 362, 435
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	2 cut(s)	337, 344
MluNI	TGGCCA	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	56, 137, 205, 235, 322
Mox20I	TGGCCA	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	2 cut(s)	323, 410
MspR9I	CCNGG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	9
MvnI	CGCG	2 cut(s)	242, 390
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	5 cut(s)	224, 308, 388, 451, 466
NlaIV	GGNNCC	2 cut(s)	196, 216
NspI	RCATGY	1 cut(s)	388
PctI	GAATGC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	4 cut(s)	154, 241, 408, 436
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	196, 216
PspPI	GGNCC	2 cut(s)	128, 194
PsrI	GAACNNNNNNTAC	2 cut(s)	36, 68
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	452
SatI	GCNGC	4 cut(s)	153, 240, 407, 435
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	2 cut(s)	128, 194
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	7 cut(s)	58, 73, 79, 133, 216, 289, 444
SinI	GGWCC	2 cut(s)	128, 194
SmiMI	CAYNNNNRTG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	337, 344
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	3 cut(s)	48, 363, 395
TaqI	TCGA	1 cut(s)	227
TasI	AATT	2 cut(s)	337, 344
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	16
TscAI	CASTG	2 cut(s)	280, 484
TseI	GCWGC	3 cut(s)	152, 406, 434
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	280, 484
VpaK11BI	GGWCC	2 cut(s)	128, 194
XagI	CCTNNNNNAGG	1 cut(s)	60
XapI	RAATTY	2 cut(s)	337, 344
XceI	RCATGY	1 cut(s)	388
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.