Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

9103454 .. 9104255

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1111600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGCTCATCTCCATGATGAATTTTTTATAGAGTCCCTCCCAATGGATGAGCAGTTGGCTGCCTTGATCTTGGTTTTCGACACAACTGAGTTGTCGTCTCTGTCTGCCCTTCTTTCTGACTTGTATTTTATGGCAACTTTCATACGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

51

Amino Acids

5.74

Weight (kDa)

4.28

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	102
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	102
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	79
BssMI	GATC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	52
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	2 cut(s)	5, 59
CviKI_1	RGCY	2 cut(s)	5, 59
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	1 cut(s)	17
FaiI	YATR	4 cut(s)	15, 29, 131, 143
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	17
HinfI	GANTC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	46
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MluCI	AATT	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	12
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	12
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	41
SgeI	CNNG	4 cut(s)	26, 76, 82, 133
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	20
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	33, 130
XapI	RAATTY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.