Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

9299211 .. 9302267

Gene Structure 3057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG112800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAGTGTTTATATTTTGTTTGGTTCAATTATGTGCAGTTGTCATCTCTTGTTGCACTTCAGAAATGGGTGTCGCGCAATGATCTTCAGAAATTCGATATATTGTTGTGCATAGGGAATAAAGTTGATCTTGTGCCGGGTCACCCGGTTCATGTGGAGTATAGGAGACGTCTGCAGAAGGTTGGGGAGCCTTTTGCTGATTCCCAGTCAGATGTTACCGAGTATGGAATCTCTGAAACTGATGGGAGCAGTTTACTGGGGGAGGATGAACCAGCTTGGGAGGCTAGAGAGTCGTGTTTGGAATGGTGCACGGAGAATAACATTGAGTACATTGAAGCTTGTGGTTTGAATGCTGAGTTTGACAAATGTTTGTCAGTTGATGGCGATTCACAAGGTGTTGAACGACTCTTTGGTGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAAACAGGCGATAAGATTACTGAACCATCATTACCTGAAAGAGAAGACTCGTCGGAAGAAGAATCTGATTATGAATTTGAGTATGATGTCCTATCGGCGGGTTCAGCTGAACCTTTTGATGACACAGATAAAGGATGGGGATGGGTTTCTGCCAGTGATGTTGCTGGAACCTCAGAAATGGGAAGACTGGATGCTCATAATAATCTTGTCCAAGAGAATGGAACTACTAGCGCTAATGAGGAGCTGCATACCTCTACATCAATGGCTGCATTACATAGTGATATCAACAAGGAAGTAGTGGTGCCCAATGCGGAAGAACCTGACCGCGACACAGAACTTGATCAACGCCAAGAGTTAGATGAGGATACACCTTTCGAAATTGAGGATTTGGAACAGTTGATGTCTGAAATCGGGAACATGCGTGACAGCTTGAGATTGATGCCTGATTTTCAAAGACGAGAAATGGCTGCAAAACTGGCCATGAAAATGGCATCCATGTTTGGGGGCGAGAGTGATAATGAACAGGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

327

Amino Acids

36.78

Weight (kDa)

4.17

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_binding	PF10199	129 - 311	1.5e-16	Alpha and gamma adaptin binding protein p34

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	751
AccII	CGCG	2 cut(s)	76, 777
AciI	CCGC	3 cut(s)	548, 761, 775
AcoI	YGGCCR	1 cut(s)	927
AcsI	RAATTY	2 cut(s)	92, 524
AcuI	CTGAAG	2 cut(s)	44, 71
AcyI	GRCGYC	1 cut(s)	169
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	329
AfeI	AGCGCT	1 cut(s)	682
AfiI	CCNNNNNNNGG	2 cut(s)	547, 951
AgsI	TTSAA	5 cut(s)	28, 335, 349, 401, 902
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AleI	CACNNNNGTG	1 cut(s)	430
AluBI	AGCT	5 cut(s)	275, 338, 557, 694, 879
AluI	AGCT	5 cut(s)	275, 338, 557, 694, 879
Alw21I	GWGCWC	2 cut(s)	311, 418
Alw26I	GTCTC	1 cut(s)	160
Alw44I	GTGCAC	1 cut(s)	307
Aor51HI	AGCGCT	1 cut(s)	682
AoxI	GGCC	2 cut(s)	434, 927
ApaLI	GTGCAC	1 cut(s)	307
ApeKI	GCWGC	3 cut(s)	694, 716, 917
ApoI	RAATTY	2 cut(s)	92, 524
AspLEI	GCGC	2 cut(s)	78, 683
AsuC2I	CCSGG	2 cut(s)	138, 146
AsuHPI	GGTGA	1 cut(s)	134
AsuII	TTCGAA	1 cut(s)	825
BaeGI	GKGCMC	2 cut(s)	311, 756
BalI	TGGCCA	1 cut(s)	929
BanI	GGYRCC	1 cut(s)	751
BbsI	GAAGAC	2 cut(s)	501, 640
Bbv12I	GWGCWC	2 cut(s)	311, 418
BbvI	GCAGC	3 cut(s)	681, 703, 904
BccI	CCATC	5 cut(s)	236, 374, 484, 579, 585
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	808
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	2 cut(s)	138, 146
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	285, 678
BfmI	CTRYAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	684
BfuI	GTATCC	1 cut(s)	808
BisI	GCNGC	3 cut(s)	695, 717, 918
BlsI	GCNGC	3 cut(s)	696, 718, 919
Bme1390I	CCNGG	3 cut(s)	138, 146, 438
BmiI	GGNNCC	3 cut(s)	189, 619, 753
BmrFI	CCNGG	3 cut(s)	138, 146, 438
BmrI	ACTGGG	2 cut(s)	199, 266
BmsI	GCATC	3 cut(s)	631, 879, 950
BmuI	ACTGGG	2 cut(s)	199, 266
BpiI	GAAGAC	2 cut(s)	501, 640
Bpu14I	TTCGAA	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	901
BpuMI	CCSGG	2 cut(s)	138, 146
BsaHI	GRCGYC	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 951
Bse1I	ACTGG	5 cut(s)	205, 261, 603, 642, 930
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	438
BseGI	GGATG	5 cut(s)	271, 590, 596, 646, 941
BseLI	CCNNNNNNNGG	2 cut(s)	547, 951
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	345, 636
BseNI	ACTGG	5 cut(s)	205, 261, 603, 642, 930
BseRI	GAGGAG	1 cut(s)	704
BseSI	GKGCMC	2 cut(s)	311, 756
BseXI	GCAGC	3 cut(s)	681, 703, 904
BsgI	GTGCAG	2 cut(s)	56, 408
Bsh1236I	CGCG	2 cut(s)	76, 777
BshFI	GGCC	2 cut(s)	436, 929
BshNI	GGYRCC	1 cut(s)	751
BsiHKAI	GWGCWC	2 cut(s)	311, 418
BsiSI	CCGG	2 cut(s)	137, 146
BslI	CCNNNNNNNGG	2 cut(s)	547, 951
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	436, 929
Bsp119I	TTCGAA	1 cut(s)	825
Bsp1286I	GDGCHC	3 cut(s)	311, 418, 756
Bsp143I	GATC	3 cut(s)	82, 127, 790
BspACI	CCGC	3 cut(s)	548, 761, 775
BspANI	GGCC	2 cut(s)	436, 929
BspCNI	CTCAG	2 cut(s)	346, 635
BspFNI	CGCG	2 cut(s)	76, 777
BspLI	GGNNCC	3 cut(s)	189, 619, 753
BspMAI	CTGCAG	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	825
BspT107I	GGYRCC	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	85
BsrI	ACTGG	5 cut(s)	205, 261, 603, 642, 930
BssMI	GATC	3 cut(s)	82, 127, 790
BssNI	GRCGYC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	846
BstACI	GRCGYC	1 cut(s)	169
BstBI	TTCGAA	1 cut(s)	825
BstDEI	CTNAG	2 cut(s)	354, 622
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	5 cut(s)	271, 590, 596, 646, 941
BstFNI	CGCG	2 cut(s)	76, 777
BstH2I	RGCGCY	1 cut(s)	684
BstHHI	GCGC	2 cut(s)	78, 683
BstKTI	GATC	3 cut(s)	85, 130, 793
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	3 cut(s)	82, 127, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 422, 554, 926
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	871
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	3 cut(s)	136, 144, 436
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	2 cut(s)	311, 756
BstUI	CGCG	2 cut(s)	76, 777
BstV1I	GCAGC	3 cut(s)	681, 703, 904
BstV2I	GAAGAC	2 cut(s)	501, 640
BstXI	CCANNNNNNTGG	2 cut(s)	668, 937
BsuI	GTATCC	1 cut(s)	808
BsuRI	GGCC	2 cut(s)	436, 929
BtsCI	GGATG	5 cut(s)	271, 590, 596, 646, 941
BtsIMutI	CAGTG	1 cut(s)	610
CfoI	GCGC	2 cut(s)	78, 683
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	4 cut(s)	152, 868, 931, 946
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	354, 622
DpnI	GATC	3 cut(s)	84, 129, 792
DpnII	GATC	3 cut(s)	82, 127, 790
DraIII	CACNNNGTG	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	927
Eco32I	GATATC	1 cut(s)	733
Eco47III	AGCGCT	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	44, 71
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	436
EcoRV	GATATC	1 cut(s)	733
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	4 cut(s)	155, 871, 934, 949
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	4 cut(s)	151, 867, 930, 945
FauI	CCCGC	1 cut(s)	541
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	3 cut(s)	695, 717, 918
FokI	GGATG	5 cut(s)	278, 597, 603, 653, 928
Fsp4HI	GCNGC	3 cut(s)	695, 717, 918
FspBI	CTAG	2 cut(s)	285, 678
GlaI	GCGC	2 cut(s)	77, 682
GluI	GCNGC	3 cut(s)	695, 717, 918
HaeII	RGCGCY	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	436, 929
HapII	CCGG	2 cut(s)	137, 146
HhaI	GCGC	2 cut(s)	78, 683
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	155, 871, 934, 949
Hin6I	GCGC	2 cut(s)	76, 681
HinP1I	GCGC	2 cut(s)	76, 681
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	8 cut(s)	200, 228, 290, 386, 405, 445, 497, 512
HpaII	CCGG	2 cut(s)	137, 146
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	254, 309
Hpy188I	TCNGA	9 cut(s)	63, 90, 211, 235, 450, 505, 517, 625, 856
Hpy188III	TCNNGA	1 cut(s)	862
Hpy8I	GTNNAC	2 cut(s)	254, 309
Hpy99I	CGWCG	1 cut(s)	505
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	846
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	9 cut(s)	37, 56, 111, 175, 309, 425, 697, 719, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 422, 554, 926
HpyF3I	CTNAG	2 cut(s)	354, 622
HpySE526I	ACGT	1 cut(s)	169
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	4 cut(s)	155, 871, 934, 949
HspAI	GCGC	2 cut(s)	76, 681
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	82, 127, 790
LmnI	GCTCC	3 cut(s)	187, 246, 691
Lsp1109I	GCAGC	3 cut(s)	681, 703, 904
LweI	GCATC	3 cut(s)	631, 879, 950
MaeI	CTAG	2 cut(s)	285, 678
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	3 cut(s)	140, 214, 872
MalI	GATC	3 cut(s)	84, 129, 792
MboI	GATC	3 cut(s)	82, 127, 790
MboII	GAAGA	6 cut(s)	77, 506, 518, 521, 645, 776
MhlI	GDGCHC	3 cut(s)	311, 418, 756
MlsI	TGGCCA	1 cut(s)	929
MluCI	AATT	4 cut(s)	28, 92, 524, 828
MluNI	TGGCCA	1 cut(s)	929
MlyI	GAGTC	3 cut(s)	299, 399, 491
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	7 cut(s)	256, 274, 631, 682, 712, 805, 826
Mox20I	TGGCCA	1 cut(s)	929
MscI	TGGCCA	1 cut(s)	929
MslI	CAYNNNNRTG	2 cut(s)	430, 935
Msp20I	TGGCCA	1 cut(s)	929
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	2 cut(s)	137, 146
MspR9I	CCNGG	3 cut(s)	138, 146, 438
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	2 cut(s)	76, 777
MwoI	GCNNNNNNNGC	4 cut(s)	281, 422, 554, 926
NciI	CCSGG	2 cut(s)	138, 146
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	3 cut(s)	82, 127, 790
NlaIII	CATG	4 cut(s)	155, 871, 934, 949
NlaIV	GGNNCC	3 cut(s)	189, 619, 753
NmuCI	GTSAC	2 cut(s)	140, 872
NspI	RCATGY	1 cut(s)	871
NspV	TTCGAA	1 cut(s)	825
OliI	CACNNNNGTG	1 cut(s)	430
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	5 cut(s)	200, 228, 386, 445, 512
PkrI	GCNGC	3 cut(s)	696, 718, 919
PleI	GAGTC	3 cut(s)	298, 399, 491
PpsI	GAGTC	3 cut(s)	298, 399, 491
Psp6I	CCWGG	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	189, 619, 753
PsrI	GAACNNNNNNTAC	2 cut(s)	465, 497
PstI	CTGCAG	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	430, 935
SatI	GCNGC	3 cut(s)	695, 717, 918
Sau3AI	GATC	3 cut(s)	82, 127, 790
SchI	GAGTC	3 cut(s)	299, 399, 491
ScrFI	CCNGG	3 cut(s)	138, 146, 438
SduI	GDGCHC	3 cut(s)	311, 418, 756
SfaNI	GCATC	3 cut(s)	631, 879, 950
SfcI	CTRYAG	1 cut(s)	173
SfuI	TTCGAA	1 cut(s)	825
SmiMI	CAYNNNNRTG	2 cut(s)	430, 935
SmlI	CTYRAG	1 cut(s)	880
SmoI	CTYRAG	1 cut(s)	880
Sse9I	AATT	4 cut(s)	28, 92, 524, 828
SsiI	CCGC	3 cut(s)	548, 761, 775
SspMI	CTAG	2 cut(s)	285, 678
StyD4I	CCNGG	3 cut(s)	136, 144, 436
TaaI	ACNGT	1 cut(s)	846
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	96, 825
TasI	AATT	4 cut(s)	28, 92, 524, 828
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	5 cut(s)	200, 228, 386, 445, 512
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	2 cut(s)	140, 872
TseI	GCWGC	3 cut(s)	694, 716, 917
Tsp45I	GTSAC	2 cut(s)	140, 872
TspDTI	ATGAA	5 cut(s)	140, 282, 537, 947, 984
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	610
VneI	GTGCAC	1 cut(s)	307
XapI	RAATTY	2 cut(s)	92, 524
XceI	RCATGY	1 cut(s)	871
XspI	CTAG	2 cut(s)	285, 678
ZraI	GACGTC	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.