Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

8811775 .. 8813257

Gene Structure 1483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1109300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAAGTCAATCAAAGGACGGAGACTCGCTGGAGAAGCGGCCCGGCATCTTCTTCCTCGACTCCCCCGGCGTCGGCAACCGCTCTCTCATTACGCTCAATGGGTGGAATATCTCTACAATGTACTACACAGCTGACGTTTCGGTATGGATGGCTCATCTCCATGACGAATTTTCGATTGAGTCCCTCCCAATATTTGACCAGTTGGCTGCCTTGATCTTGGTTTTCGACACAACTGAGTTGTCGTCTCTGTCTGCGCTTCAGAAATGGGTATCTCGAACTGATCTTCAAAAGTTCGATATACTAGTGTGCATAGGGAATAAGGTTGATCTTGTTCCGGGTCACCCGGTTCATACCGAATATAGAAGACGACTGCAGAAGCTTGGAGACCCGTTTGCTGATGACGGTCCAGGGTTCACTGTGTATGGAATCACCGAGGCTGAAGGAAGCAGTTTATTGGGGGATGACGAGTCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

160

Amino Acids

17.61

Weight (kDa)

4.51

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	2 cut(s)	40, 82
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	2 cut(s)	245, 462
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	290
AhlI	ACTAGT	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	2 cut(s)	134, 382
AluI	AGCT	2 cut(s)	134, 382
Alw26I	GTCTC	3 cut(s)	18, 252, 381
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	42, 407
AsuC2I	CCSGG	4 cut(s)	45, 69, 339, 347
AsuHPI	GGTGA	2 cut(s)	335, 424
AvaII	GGWCC	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	411
BcnI	CCSGG	4 cut(s)	45, 69, 339, 347
BcoDI	GTCTC	3 cut(s)	18, 252, 381
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	374
BisI	GCNGC	2 cut(s)	41, 210
BlsI	GCNGC	2 cut(s)	42, 211
Bme1390I	CCNGG	5 cut(s)	45, 69, 339, 347, 411
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	42, 407
BmrFI	CCNGG	5 cut(s)	45, 69, 339, 347, 411
BmsI	GCATC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	4 cut(s)	45, 69, 339, 347
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	67, 410, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	3 cut(s)	67, 410, 435
BseGI	GGATG	2 cut(s)	156, 469
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	43
BsiSI	CCGG	4 cut(s)	45, 69, 338, 347
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	3 cut(s)	18, 252, 381
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	43
Bso31I	GGTCTC	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	216, 283, 328
BspACI	CCGC	2 cut(s)	40, 82
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	378
BspTNI	GGTCTC	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	3 cut(s)	67, 410, 435
BssMI	GATC	3 cut(s)	216, 283, 328
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	407, 421
BstACI	GRCGYC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	237
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	156, 469
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	3 cut(s)	219, 286, 331
BstMAI	GTCTC	3 cut(s)	18, 252, 381
BstMBI	GATC	3 cut(s)	216, 283, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	411
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	5 cut(s)	43, 67, 337, 345, 409
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	156, 469
BtsIMutI	CAGTG	1 cut(s)	417
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	42, 407
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	6 cut(s)	43, 134, 155, 209, 382, 440
CviKI_1	RGCY	6 cut(s)	43, 134, 155, 209, 382, 440
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	218, 285, 330
DpnII	GATC	3 cut(s)	216, 283, 328
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	245, 462
Eco91I	GGTNACC	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	1 cut(s)	167
FaiI	YATR	8 cut(s)	148, 165, 302, 314, 354, 363, 426, 478
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	41, 210
FokI	GGATG	2 cut(s)	163, 476
Fsp4HI	GCNGC	2 cut(s)	41, 210
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	2 cut(s)	41, 210
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	4 cut(s)	45, 69, 338, 347
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	5 cut(s)	26, 62, 182, 429, 470
HpaII	CCGG	4 cut(s)	45, 69, 338, 347
HphI	GGTGA	2 cut(s)	335, 424
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	276
Hpy8I	GTNNAC	1 cut(s)	417
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	2 cut(s)	407, 421
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	312, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	3 cut(s)	216, 283, 328
LpnPI	CCDG	8 cut(s)	17, 58, 82, 215, 351, 360, 396, 423
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	3 cut(s)	218, 285, 330
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	3 cut(s)	216, 283, 328
MboII	GAAGA	4 cut(s)	43, 46, 278, 378
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	4 cut(s)	20, 56, 191, 479
MnlI	CCTC	3 cut(s)	68, 197, 430
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	4 cut(s)	45, 69, 338, 347
MspR9I	CCNGG	5 cut(s)	45, 69, 339, 347, 411
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	4 cut(s)	45, 69, 339, 347
NdeII	GATC	3 cut(s)	216, 283, 328
NlaIII	CATG	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	429
PkrI	GCNGC	2 cut(s)	42, 211
PleI	GAGTC	4 cut(s)	20, 56, 190, 478
PpsI	GAGTC	4 cut(s)	20, 56, 190, 478
Psp6I	CCWGG	1 cut(s)	409
PspEI	GGTNACC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	409
PspPI	GGNCC	2 cut(s)	42, 407
PstI	CTGCAG	1 cut(s)	378
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	162
SatI	GCNGC	2 cut(s)	41, 210
Sau3AI	GATC	3 cut(s)	216, 283, 328
Sau96I	GGNCC	2 cut(s)	42, 407
SchI	GAGTC	4 cut(s)	20, 56, 191, 479
ScrFI	CCNGG	5 cut(s)	45, 69, 339, 347, 411
SetI	ASST	4 cut(s)	136, 141, 327, 384
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	162
SpeI	ACTAGT	1 cut(s)	304
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	2 cut(s)	40, 82
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	5 cut(s)	43, 67, 337, 345, 409
TaaI	ACNGT	2 cut(s)	407, 421
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	5 cut(s)	60, 176, 228, 277, 297
TasI	AATT	1 cut(s)	170
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	429
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	170
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.