Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

9146930 .. 9147648

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1112300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAAAGTCAACCAAAGAACGGAGACTCGCTGGAGAAGCGGCCCGGCATCTTCTTCCTCGGCTCCCCCGGCGTCGGCAAACGCTCTCTCATTACGCTCAATGGATGGAATATCTCTACAAAGTACTACACAGCTGACGTTTCGGTATGGATGGCTCGTCTCCATGACGAATTTTCGATTGAGTCCCTCCCAATGTTTGACCAGTTGGCTGCCTTGATCTGGTTTTCGACACAACTGAGTTGTCGTCTCTGTCTGCGCTTCAGAAATAGGTATCTTGAACTGATCTTCAAAAGTTCGATATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

102

Amino Acids

11.7

Weight (kDa)

9.06

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	20, 74, 219
AgsI	TTSAA	2 cut(s)	278, 289
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	3 cut(s)	18, 164, 251
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	42
AsuC2I	CCSGG	2 cut(s)	45, 69
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	99, 145
BcnI	CCSGG	2 cut(s)	45, 69
BcoDI	GTCTC	3 cut(s)	18, 164, 251
BfaI	CTAG	1 cut(s)	304
BisI	GCNGC	2 cut(s)	41, 210
BlsI	GCNGC	2 cut(s)	42, 211
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	45, 69
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	45, 69
BmsI	GCATC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	45, 69
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	58, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 74, 219
Bse1I	ACTGG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	58, 67
BseGI	GGATG	2 cut(s)	110, 156
BseLI	CCNNNNNNNGG	3 cut(s)	20, 74, 219
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	45, 69
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	20, 74, 219
BsmAI	GTCTC	3 cut(s)	18, 164, 251
BsmBI	CGTCTC	2 cut(s)	164, 251
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	216, 282
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	58, 67
BssMI	GATC	2 cut(s)	216, 282
BssNI	GRCGYC	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	236
BstF5I	GGATG	2 cut(s)	110, 156
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	2 cut(s)	219, 285
BstMAI	GTCTC	3 cut(s)	18, 164, 251
BstMBI	GATC	2 cut(s)	216, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 69
BstSCI	CCNGG	2 cut(s)	43, 67
BstV1I	GCAGC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	110, 156
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	42
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	5 cut(s)	43, 63, 134, 155, 209
CviKI_1	RGCY	5 cut(s)	43, 63, 134, 155, 209
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	2 cut(s)	218, 284
DpnII	GATC	2 cut(s)	216, 282
Eco57I	CTGAAG	1 cut(s)	244
Esp3I	CGTCTC	2 cut(s)	164, 251
FaeI	CATG	1 cut(s)	167
FaiI	YATR	3 cut(s)	148, 165, 301
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	41, 210
FokI	GGATG	2 cut(s)	117, 163
Fsp4HI	GCNGC	2 cut(s)	41, 210
FspBI	CTAG	1 cut(s)	304
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	2 cut(s)	41, 210
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	2 cut(s)	45, 69
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HinfI	GANTC	2 cut(s)	26, 182
HpaII	CCGG	2 cut(s)	45, 69
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 69
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	216, 282
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	17, 58, 82, 205, 215
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	304
MaeII	ACGT	1 cut(s)	138
MalI	GATC	2 cut(s)	218, 284
MboI	GATC	2 cut(s)	216, 282
MboII	GAAGA	3 cut(s)	43, 46, 277
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	20, 191
MnlI	CCTC	2 cut(s)	68, 197
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	2 cut(s)	45, 69
MspR9I	CCNGG	2 cut(s)	45, 69
MwoI	GCNNNNNNNGC	2 cut(s)	37, 69
NciI	CCSGG	2 cut(s)	45, 69
NdeII	GATC	2 cut(s)	216, 282
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	42, 211
PleI	GAGTC	2 cut(s)	20, 190
PpsI	GAGTC	2 cut(s)	20, 190
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SatI	GCNGC	2 cut(s)	41, 210
Sau3AI	GATC	2 cut(s)	216, 282
Sau96I	GGNCC	1 cut(s)	42
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	2 cut(s)	20, 191
ScrFI	CCNGG	2 cut(s)	45, 69
SetI	ASST	3 cut(s)	136, 141, 272
SfaNI	GCATC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	43, 67
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	176, 227, 296
TasI	AATT	1 cut(s)	170
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	209
TspGWI	ACGGA	1 cut(s)	36
XapI	RAATTY	1 cut(s)	170
XspI	CTAG	1 cut(s)	304
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.