Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

18628949 .. 18631716

Gene Structure 2768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1228500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAAGCTCAAGCAAAAGAAGGAGACTCTCTGGAGAAGCGGCCCGGCATCTTCTTCCTTGGTTCCCCCGGCGTTGGCAAACGCTCTCTTATTTCTCGATTACTGGGTTTGGATTTTGACGACGCTTCTGATTCTTCATCATCGTCATCTCAGCTGGTGGTTAATGGATGGAATATCTCTACAAAGTACTATACTGCTGATGTTTCGGTATGGATGGCTCATCTCCATGACGAATTTTCGATTGAGACCCTCCCAATGTATGACCAGTTGGCTGCCTTGATCTTGGTTTTCGACACAACTGAGTTGGCGTCTCTGTCTGCACTTCAGAAATGGGTGTCTCGAACTGATCTTCAAAAGTTTGATATACTAGTATGTGTAGGGAATAAGGTTGATCTTGTTCCGGGTCACCCAGTTCATGCCGAATATAGAAGACAATTGCAGAAGCTTGGAGACCCGTTTGCTGATGACGGTCCAGCTTTCACTGTGTATGGAATCTCCGAGGCTGAAGGAAGCAGTTTATTGGGGAATGACGAGCCACCTGGGGAGGCTAGGCACACATGTTTGGAATGGTGCACTGAGCATAACATTGAGTTCGTCGAAGCTTGTGCTTCAAATGCTGATTTTGACAAATGTTTGTCAGTTGATGGCGATTCACAAGGTATTGAACGGATTTTTGGTGCTCTTTCTGCACACATGTGGCCTGGAATGATTTTGAAATCAGGCGATAAGATTGCTGAACCATCACTACCTGAAAGAGGAGAAGACTTGTCAGACGAAGAATCTGATTATGAATTTGAGTATGAAGTCCTCTCTGCGGGTTCAGCTGACCCATTTGATGACACGGAAGAATGGGTTTCTGCAAATGTTTTTGCTGGACCTTCAGATATGCGAGGACTGGCTGCTCAAAGTAATCTTGTCCTAAAATGCAAAGAAGAGAATGGAACCAGCTGTGGTAAGCAGGAGCCCCATGCCTCAACCTCGACAGCTGCGTTGGATGATGGTATCAACAAAGGAGGGGTATCCAATGCAGAAAAACCTGACCAAGACACAGAACTTGACCAAGCCCAAGAACCAGATGAGGGTTCGAATGTTGAATTTGAGGATTTGGAACAGTTGATGTCTGAGATTGGGAACATGCGTGACAGTTTGAGATTGATGCCCGATTTTCAGAGAAGAGATATGGCTGCAAAGCTGGCCATGAAAATGGCTACTATGTTCGGGGGCGGCAGTGATGATGAAGTGGAAAGTATCGGCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

420

Amino Acids

45.67

Weight (kDa)

4.26

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	17 - 131	1.4e-07	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	19 - 146	2.1e-08	Ras family
Adaptin_binding	PF10199	217 - 400	2.7e-17	Alpha and gamma adaptin binding protein p34

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	40, 815, 1224
AcoI	YGGCCR	1 cut(s)	1194
AcsI	RAATTY	3 cut(s)	233, 791, 1094
AcuI	CTGAAG	3 cut(s)	308, 525, 864
AcyI	GRCGYC	1 cut(s)	308
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	74, 755, 814, 1079
AflIII	ACRYGT	2 cut(s)	557, 693
AgsI	TTSAA	5 cut(s)	353, 612, 665, 715, 1094
AhlI	ACTAGT	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	538, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
AleI	CACNNNNGTG	1 cut(s)	694
AluBI	AGCT	9 cut(s)	8, 154, 445, 476, 602, 824, 948, 986, 1192
AluI	AGCT	9 cut(s)	8, 154, 445, 476, 602, 824, 948, 986, 1192
Alw21I	GWGCWC	2 cut(s)	575, 682
Alw26I	GTCTC	5 cut(s)	18, 239, 315, 342, 444
Alw44I	GTGCAC	1 cut(s)	571
AoxI	GGCC	3 cut(s)	41, 698, 1194
ApaLI	GTGCAC	1 cut(s)	571
ApeKI	GCWGC	4 cut(s)	272, 899, 986, 1184
ApoI	RAATTY	3 cut(s)	233, 791, 1094
AspS9I	GGNCC	3 cut(s)	42, 470, 875
AsuC2I	CCSGG	3 cut(s)	45, 69, 402
AsuHPI	GGTGA	1 cut(s)	398
AsuII	TTCGAA	1 cut(s)	1085
AvaII	GGWCC	2 cut(s)	470, 875
BaeGI	GKGCMC	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	1196
BanII	GRGCYC	1 cut(s)	966
BbsI	GAAGAC	2 cut(s)	436, 768
Bbv12I	GWGCWC	2 cut(s)	575, 682
BbvI	GCAGC	4 cut(s)	259, 886, 973, 1171
BccI	CCATC	5 cut(s)	162, 208, 638, 748, 992
BcgI	CGANNNNNNTGC	4 cut(s)	587, 621, 713, 747
BciT130I	CCWGG	2 cut(s)	540, 702
BciVI	GTATCC	1 cut(s)	1030
BcnI	CCSGG	3 cut(s)	45, 69, 402
BcoDI	GTCTC	5 cut(s)	18, 239, 315, 342, 444
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	2 cut(s)	368, 549
BfuI	GTATCC	1 cut(s)	1030
BisI	GCNGC	6 cut(s)	41, 273, 900, 987, 1185, 1225
BlsI	GCNGC	6 cut(s)	42, 274, 901, 988, 1186, 1226
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	5 cut(s)	45, 69, 402, 540, 702
Bme18I	GGWCC	2 cut(s)	470, 875
BmgT120I	GGNCC	3 cut(s)	42, 470, 875
BmiI	GGNNCC	3 cut(s)	64, 943, 963
BmrFI	CCNGG	5 cut(s)	45, 69, 402, 540, 702
BmrI	ACTGGG	2 cut(s)	113, 404
BmsI	GCATC	2 cut(s)	57, 1146
BmuI	ACTGGG	2 cut(s)	113, 404
BpiI	GAAGAC	2 cut(s)	436, 768
BpmI	CTGGAG	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	1085
BpuMI	CCSGG	3 cut(s)	45, 69, 402
BsaHI	GRCGYC	1 cut(s)	308
BsaI	GGTCTC	2 cut(s)	239, 444
BsaJI	CCNNGG	4 cut(s)	58, 67, 498, 539
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 755, 814, 1079
Bse1I	ACTGG	4 cut(s)	108, 265, 410, 900
BseBI	CCWGG	2 cut(s)	540, 702
BseDI	CCNNGG	4 cut(s)	58, 67, 498, 539
BseGI	GGATG	3 cut(s)	173, 219, 1000
BseLI	CCNNNNNNNGG	4 cut(s)	74, 755, 814, 1079
BseMII	CTCAG	4 cut(s)	164, 291, 567, 1113
BseNI	ACTGG	4 cut(s)	108, 265, 410, 900
BseRI	GAGGAG	1 cut(s)	771
BseSI	GKGCMC	1 cut(s)	575
BseXI	GCAGC	4 cut(s)	259, 886, 973, 1171
BsgI	GTGCAG	2 cut(s)	303, 672
BshFI	GGCC	3 cut(s)	43, 700, 1196
BsiHKAI	GWGCWC	2 cut(s)	575, 682
BsiSI	CCGG	3 cut(s)	45, 69, 401
BslI	CCNNNNNNNGG	4 cut(s)	74, 755, 814, 1079
BsmAI	GTCTC	5 cut(s)	18, 239, 315, 342, 444
BsmBI	CGTCTC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	43, 700, 1196
Bso31I	GGTCTC	2 cut(s)	239, 444
Bsp119I	TTCGAA	1 cut(s)	1085
Bsp1286I	GDGCHC	3 cut(s)	575, 682, 966
Bsp143I	GATC	3 cut(s)	279, 346, 391
BspACI	CCGC	3 cut(s)	40, 815, 1224
BspANI	GGCC	3 cut(s)	43, 700, 1196
BspCNI	CTCAG	4 cut(s)	163, 292, 568, 1114
BspLI	GGNNCC	3 cut(s)	64, 943, 963
BspT104I	TTCGAA	1 cut(s)	1085
BspTNI	GGTCTC	2 cut(s)	239, 444
BsrI	ACTGG	4 cut(s)	108, 265, 410, 900
BssECI	CCNNGG	4 cut(s)	58, 67, 498, 539
BssMI	GATC	3 cut(s)	279, 346, 391
BssNI	GRCGYC	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	2 cut(s)	540, 702
Bst4CI	ACNGT	4 cut(s)	470, 484, 1113, 1145
Bst6I	CTCTTC	2 cut(s)	927, 1168
BstACI	GRCGYC	1 cut(s)	308
BstBI	TTCGAA	1 cut(s)	1085
BstC8I	GCNNGC	1 cut(s)	1194
BstDEI	CTNAG	4 cut(s)	150, 300, 576, 1122
BstEII	GGTNACC	1 cut(s)	404
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	3 cut(s)	173, 219, 1000
BstKTI	GATC	3 cut(s)	282, 349, 394
BstMAI	GTCTC	5 cut(s)	18, 239, 315, 342, 444
BstMBI	GATC	3 cut(s)	279, 346, 391
BstMWI	GCNNNNNNNGC	4 cut(s)	614, 686, 821, 1193
BstNI	CCWGG	2 cut(s)	540, 702
BstNSI	RCATGY	3 cut(s)	561, 697, 1138
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	5 cut(s)	43, 67, 400, 538, 700
BstSLI	GKGCMC	1 cut(s)	575
BstV1I	GCAGC	4 cut(s)	259, 886, 973, 1171
BstV2I	GAAGAC	2 cut(s)	436, 768
BstXI	CCANNNNNNTGG	1 cut(s)	1204
BsuI	GTATCC	1 cut(s)	1030
BsuRI	GGCC	3 cut(s)	43, 700, 1196
BtsCI	GGATG	3 cut(s)	173, 219, 1000
BtsI	GCAGTG	1 cut(s)	1234
BtsIMutI	CAGTG	3 cut(s)	480, 573, 1234
Cac8I	GCNNGC	1 cut(s)	1194
Cfr13I	GGNCC	3 cut(s)	42, 470, 875
CseI	GACGC	2 cut(s)	131, 297
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	7 cut(s)	227, 416, 558, 694, 968, 1135, 1198
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	150, 300, 576, 1122
DpnI	GATC	3 cut(s)	281, 348, 393
DpnII	GATC	3 cut(s)	279, 346, 391
EaeI	YGGCCR	1 cut(s)	1194
Eam1104I	CTCTTC	2 cut(s)	927, 1168
EarI	CTCTTC	2 cut(s)	927, 1168
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	966
Eco31I	GGTCTC	2 cut(s)	239, 444
Eco47I	GGWCC	2 cut(s)	470, 875
Eco57I	CTGAAG	3 cut(s)	308, 525, 864
Eco91I	GGTNACC	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoO65I	GGTNACC	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	538, 700
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	966
ErhI	CCWWGG	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	7 cut(s)	230, 419, 561, 697, 971, 1138, 1201
FatI	CATG	7 cut(s)	226, 415, 557, 693, 967, 1134, 1197
FauI	CCCGC	1 cut(s)	808
Fnu4HI	GCNGC	6 cut(s)	41, 273, 900, 987, 1185, 1225
FokI	GGATG	3 cut(s)	180, 226, 1007
FriOI	GRGCYC	1 cut(s)	966
Fsp4HI	GCNGC	6 cut(s)	41, 273, 900, 987, 1185, 1225
FspBI	CTAG	2 cut(s)	368, 549
GluI	GCNGC	6 cut(s)	41, 273, 900, 987, 1185, 1225
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	43, 700, 1196
HapII	CCGG	3 cut(s)	45, 69, 401
HgaI	GACGC	2 cut(s)	131, 297
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	7 cut(s)	230, 419, 561, 697, 971, 1138, 1201
HindIII	AAGCTT	2 cut(s)	443, 600
HinfI	GANTC	5 cut(s)	26, 131, 492, 650, 779
HpaII	CCGG	3 cut(s)	45, 69, 401
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	8 cut(s)	130, 327, 499, 772, 784, 883, 1123, 1170
Hpy188III	TCNNGA	3 cut(s)	32, 96, 339
Hpy8I	GTNNAC	1 cut(s)	573
Hpy99I	CGWCG	2 cut(s)	125, 599
HpyAV	CCTTC	3 cut(s)	14, 500, 888
HpyCH4III	ACNGT	4 cut(s)	470, 484, 1113, 1145
HpyCH4V	TGCA	8 cut(s)	320, 439, 573, 689, 860, 927, 1028, 1187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	614, 686, 821, 1193
HpyF3I	CTNAG	4 cut(s)	150, 300, 576, 1122
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	7 cut(s)	230, 419, 561, 697, 971, 1138, 1201
Kzo9I	GATC	3 cut(s)	279, 346, 391
LmnI	GCTCC	1 cut(s)	961
Lsp1109I	GCAGC	4 cut(s)	259, 886, 973, 1171
LweI	GCATC	2 cut(s)	57, 1146
MaeI	CTAG	2 cut(s)	368, 549
MaeIII	GTNAC	2 cut(s)	404, 1139
MalI	GATC	3 cut(s)	281, 348, 393
MboI	GATC	3 cut(s)	279, 346, 391
MfeI	CAATTG	1 cut(s)	434
MhlI	GDGCHC	3 cut(s)	575, 682, 966
MlsI	TGGCCA	1 cut(s)	1196
MluCI	AATT	4 cut(s)	233, 434, 791, 1094
MluNI	TGGCCA	1 cut(s)	1196
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	972
Mox20I	TGGCCA	1 cut(s)	1196
MscI	TGGCCA	1 cut(s)	1196
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	3 cut(s)	225, 694, 1202
Msp20I	TGGCCA	1 cut(s)	1196
MspA1I	CMGCKG	4 cut(s)	154, 824, 948, 986
MspI	CCGG	3 cut(s)	45, 69, 401
MspR9I	CCNGG	5 cut(s)	45, 69, 402, 540, 702
MunI	CAATTG	1 cut(s)	434
MvaI	CCWGG	2 cut(s)	540, 702
MwoI	GCNNNNNNNGC	4 cut(s)	614, 686, 821, 1193
NciI	CCSGG	3 cut(s)	45, 69, 402
NdeII	GATC	3 cut(s)	279, 346, 391
NlaIII	CATG	7 cut(s)	230, 419, 561, 697, 971, 1138, 1201
NlaIV	GGNNCC	3 cut(s)	64, 943, 963
NmuCI	GTSAC	2 cut(s)	404, 1139
NspI	RCATGY	3 cut(s)	561, 697, 1138
NspV	TTCGAA	1 cut(s)	1085
OliI	CACNNNNGTG	1 cut(s)	694
PciI	ACATGT	2 cut(s)	557, 693
PcsI	WCGNNNNNNNCGW	1 cut(s)	986
PfeI	GAWTC	4 cut(s)	131, 492, 650, 779
PkrI	GCNGC	6 cut(s)	42, 274, 901, 988, 1186, 1226
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PscI	ACATGT	2 cut(s)	557, 693
Psp6I	CCWGG	2 cut(s)	538, 700
PspEI	GGTNACC	1 cut(s)	404
PspGI	CCWGG	2 cut(s)	538, 700
PspN4I	GGNNCC	3 cut(s)	64, 943, 963
PspPI	GGNCC	3 cut(s)	42, 470, 875
PsrI	GAACNNNNNNTAC	2 cut(s)	729, 761
PvuII	CAGCTG	4 cut(s)	154, 824, 948, 986
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	3 cut(s)	225, 694, 1202
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	6 cut(s)	41, 273, 900, 987, 1185, 1225
Sau3AI	GATC	3 cut(s)	279, 346, 391
Sau96I	GGNCC	3 cut(s)	42, 470, 875
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	5 cut(s)	45, 69, 402, 540, 702
SduI	GDGCHC	3 cut(s)	575, 682, 966
SfaNI	GCATC	2 cut(s)	57, 1146
SfuI	TTCGAA	1 cut(s)	1085
SinI	GGWCC	2 cut(s)	470, 875
SmiMI	CAYNNNNRTG	3 cut(s)	225, 694, 1202
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SpeI	ACTAGT	1 cut(s)	367
Sse9I	AATT	4 cut(s)	233, 434, 791, 1094
SsiI	CCGC	3 cut(s)	40, 815, 1224
SspMI	CTAG	2 cut(s)	368, 549
StyD4I	CCNGG	5 cut(s)	43, 67, 400, 538, 700
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	4 cut(s)	470, 484, 1113, 1145
TaqI	TCGA	7 cut(s)	97, 239, 291, 340, 597, 980, 1085
TasI	AATT	4 cut(s)	233, 434, 791, 1094
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	2 cut(s)	43, 1227
TfiI	GAWTC	4 cut(s)	131, 492, 650, 779
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	3 cut(s)	487, 580, 1234
TseFI	GTSAC	2 cut(s)	404, 1139
TseI	GCWGC	4 cut(s)	272, 899, 986, 1184
Tsp45I	GTSAC	2 cut(s)	404, 1139
TspDTI	ATGAA	6 cut(s)	126, 404, 804, 816, 1214, 1251
TspGWI	ACGGA	2 cut(s)	682, 857
TspRI	CASTG	3 cut(s)	487, 580, 1234
VneI	GTGCAC	1 cut(s)	571
VpaK11BI	GGWCC	2 cut(s)	470, 875
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	3 cut(s)	233, 791, 1094
XceI	RCATGY	3 cut(s)	561, 697, 1138
XspI	CTAG	2 cut(s)	368, 549
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.