Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

9986576 .. 9989179

Gene Structure 2604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG113700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTCATCTTGATGAGCAGTTTTCGATTGTGAAGGTTCCAATGTATGATCAGCTAGTTGCTTTGATTATGGTGTTTGATACAACTGAGTTGTCATCTCTTGTTGCACTTCAGAAATGGGTGTCGCGCAATGATCTTCAGAAATTCGATATATTGTTGTGCATAGGGAATAAAGTTGATCTTGTGCCAGGTCACCCGGTTCATGTGGAGTATAGGAGACGTCTGCTGAAGGCTGGGGAGCCTTTTGCTGATTCCCAGTCAGATGTTACCGAGTATGGAATCTCTGAAACTGATGGGAGCAGTTTACTGGGGGAGGATGAACCAGCTTGGCAGGCTAGAGGGTCGTGTTTGGAATGGTGCACGGAGAATAACATTGAGTACATTGAAGCTTGTGGTTCAAATGCTGAGTTTGACAAATGTTTGTCAGTTGATGGCGATTCACAAGGTGTTGAACGACTCTTTGGTGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAAACAGGCGATAAGATTACTGAACTATCATTACCTGAAAGAGAAGACTCGTCGGAAGAAGAATCTGATTATGAATTCGAGTATGATGTCCTATCGGCGGGTTCAGCTGAACCTTTTGATGACACAGATAAAGGATGGGGATGGGTTTCTGCCAGTGATGTTGCTGGAACCTCAGAAATGGGAAGACTGGATGCTCATAATAATCTTGTCCAAGAGAATGGAACTACTAGCGCTAATGAGGAGCTGCATACCTCTACATCAATGGCTGCATTACATAGTGATATCAACAAGGAAGTAGTGCTGCCCAATGCGGAAGAACCTGACTGCGACACAGAACTTGATCAACGCCAAGAGTTAGATGAGGATACACCTTTCGAAATTGAGGATTTGGAACAGTTGATGTCTGAAATCGGGAACATGCGTGACAGCTTGAGATTGATGCCTGATTTTCAAAGACGAGAAATGGCTGCAAAACTGGCCATGAAAATGGCATCCATGTTTGGGGGCGAGAGTGATAATGAACAGGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

344

Amino Acids

38.36

Weight (kDa)

4.16

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_binding	PF10199	146 - 328	1.9e-16	Alpha and gamma adaptin binding protein p34

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	223
AccII	CGCG	1 cut(s)	127
AciI	CCGC	2 cut(s)	599, 812
AcoI	YGGCCR	1 cut(s)	978
AcsI	RAATTY	2 cut(s)	143, 575
AcuI	CTGAAG	3 cut(s)	95, 122, 248
AcyI	GRCGYC	1 cut(s)	220
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	380
AfeI	AGCGCT	1 cut(s)	733
AfiI	CCNNNNNNNGG	2 cut(s)	598, 1002
AgsI	TTSAA	4 cut(s)	386, 399, 452, 953
AjnI	CCWGG	2 cut(s)	187, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AleI	CACNNNNGTG	1 cut(s)	481
AluBI	AGCT	6 cut(s)	55, 326, 389, 608, 745, 930
AluI	AGCT	6 cut(s)	55, 326, 389, 608, 745, 930
Alw21I	GWGCWC	2 cut(s)	362, 469
Alw26I	GTCTC	1 cut(s)	211
Alw44I	GTGCAC	1 cut(s)	358
Aor51HI	AGCGCT	1 cut(s)	733
AoxI	GGCC	2 cut(s)	485, 978
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	4 cut(s)	745, 767, 802, 968
ApoI	RAATTY	2 cut(s)	143, 575
AspLEI	GCGC	2 cut(s)	129, 734
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	876
BaeGI	GKGCMC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	980
BbsI	GAAGAC	2 cut(s)	552, 691
Bbv12I	GWGCWC	2 cut(s)	362, 469
BbvI	GCAGC	4 cut(s)	732, 754, 789, 955
BccI	CCATC	4 cut(s)	287, 425, 630, 636
BciT130I	CCWGG	2 cut(s)	189, 489
BciVI	GTATCC	1 cut(s)	859
BclI	TGATCA	2 cut(s)	49, 841
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	3 cut(s)	56, 336, 729
BfoI	RGCGCY	1 cut(s)	735
BfuI	GTATCC	1 cut(s)	859
BisI	GCNGC	4 cut(s)	746, 768, 803, 969
BlsI	GCNGC	4 cut(s)	747, 769, 804, 970
Bme1390I	CCNGG	3 cut(s)	189, 197, 489
BmiI	GGNNCC	3 cut(s)	39, 240, 670
BmrFI	CCNGG	3 cut(s)	189, 197, 489
BmrI	ACTGGG	2 cut(s)	250, 317
BmsI	GCATC	3 cut(s)	682, 930, 1001
BmuI	ACTGGG	2 cut(s)	250, 317
BpiI	GAAGAC	2 cut(s)	552, 691
Bpu14I	TTCGAA	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	952
BpuMI	CCSGG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	598, 1002
Bse1I	ACTGG	5 cut(s)	256, 312, 654, 693, 981
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	189, 489
BseGI	GGATG	5 cut(s)	322, 641, 647, 697, 992
BseLI	CCNNNNNNNGG	2 cut(s)	598, 1002
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	3 cut(s)	78, 396, 687
BseNI	ACTGG	5 cut(s)	256, 312, 654, 693, 981
BseRI	GAGGAG	1 cut(s)	755
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	732, 754, 789, 955
BseYI	CCCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	487, 980
BsiHKAI	GWGCWC	2 cut(s)	362, 469
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	598, 1002
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	487, 980
Bsp119I	TTCGAA	1 cut(s)	876
Bsp1286I	GDGCHC	2 cut(s)	362, 469
Bsp143I	GATC	4 cut(s)	49, 133, 178, 841
BspACI	CCGC	2 cut(s)	599, 812
BspANI	GGCC	2 cut(s)	487, 980
BspCNI	CTCAG	3 cut(s)	79, 397, 686
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	3 cut(s)	39, 240, 670
BspT104I	TTCGAA	1 cut(s)	876
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	5 cut(s)	256, 312, 654, 693, 981
BssMI	GATC	4 cut(s)	49, 133, 178, 841
BssNI	GRCGYC	1 cut(s)	220
Bst2UI	CCWGG	2 cut(s)	189, 489
Bst4CI	ACNGT	1 cut(s)	897
BstACI	GRCGYC	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	876
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	87, 405, 673
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	5 cut(s)	322, 641, 647, 697, 992
BstFNI	CGCG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	735
BstHHI	GCGC	2 cut(s)	129, 734
BstKTI	GATC	4 cut(s)	52, 136, 181, 844
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	4 cut(s)	49, 133, 178, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 473, 605, 977
BstNI	CCWGG	2 cut(s)	189, 489
BstNSI	RCATGY	1 cut(s)	922
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	3 cut(s)	187, 195, 487
BstSLI	GKGCMC	1 cut(s)	362
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	4 cut(s)	732, 754, 789, 955
BstV2I	GAAGAC	2 cut(s)	552, 691
BstXI	CCANNNNNNTGG	2 cut(s)	719, 988
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	2 cut(s)	487, 980
BtsCI	GGATG	5 cut(s)	322, 641, 647, 697, 992
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	2 cut(s)	129, 734
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	4 cut(s)	203, 919, 982, 997
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	3 cut(s)	87, 405, 673
DpnI	GATC	4 cut(s)	51, 135, 180, 843
DpnII	GATC	4 cut(s)	49, 133, 178, 841
DraIII	CACNNNGTG	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	978
Eco32I	GATATC	1 cut(s)	784
Eco47III	AGCGCT	1 cut(s)	733
Eco57I	CTGAAG	3 cut(s)	95, 122, 248
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	187, 487
EcoRV	GATATC	1 cut(s)	784
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	4 cut(s)	206, 922, 985, 1000
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	4 cut(s)	202, 918, 981, 996
FauI	CCCGC	1 cut(s)	592
FauNDI	CATATG	1 cut(s)	480
FbaI	TGATCA	2 cut(s)	49, 841
Fnu4HI	GCNGC	4 cut(s)	746, 768, 803, 969
FokI	GGATG	5 cut(s)	329, 648, 654, 704, 979
Fsp4HI	GCNGC	4 cut(s)	746, 768, 803, 969
FspBI	CTAG	3 cut(s)	56, 336, 729
GlaI	GCGC	2 cut(s)	128, 733
GluI	GCNGC	4 cut(s)	746, 768, 803, 969
GsaI	CCCAGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	735
HaeIII	GGCC	2 cut(s)	487, 980
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	2 cut(s)	129, 734
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	206, 922, 985, 1000
Hin6I	GCGC	2 cut(s)	127, 732
HinP1I	GCGC	2 cut(s)	127, 732
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	7 cut(s)	251, 279, 437, 456, 496, 548, 563
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	305, 360
Hpy188I	TCNGA	9 cut(s)	114, 141, 262, 286, 501, 556, 568, 676, 907
Hpy188III	TCNNGA	2 cut(s)	11, 913
Hpy8I	GTNNAC	2 cut(s)	305, 360
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	28, 223
HpyCH4III	ACNGT	1 cut(s)	897
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	7 cut(s)	107, 162, 360, 476, 748, 770, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 473, 605, 977
HpyF3I	CTNAG	3 cut(s)	87, 405, 673
HpySE526I	ACGT	1 cut(s)	220
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	4 cut(s)	206, 922, 985, 1000
HspAI	GCGC	2 cut(s)	127, 732
Ksp22I	TGATCA	2 cut(s)	49, 841
Kzo9I	GATC	4 cut(s)	49, 133, 178, 841
LmnI	GCTCC	3 cut(s)	238, 297, 742
Lsp1109I	GCAGC	4 cut(s)	732, 754, 789, 955
LweI	GCATC	3 cut(s)	682, 930, 1001
MaeI	CTAG	3 cut(s)	56, 336, 729
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	3 cut(s)	191, 265, 923
MalI	GATC	4 cut(s)	51, 135, 180, 843
MboI	GATC	4 cut(s)	49, 133, 178, 841
MboII	GAAGA	6 cut(s)	128, 557, 569, 572, 696, 827
MhlI	GDGCHC	2 cut(s)	362, 469
MlsI	TGGCCA	1 cut(s)	980
MluCI	AATT	3 cut(s)	143, 575, 879
MluNI	TGGCCA	1 cut(s)	980
MlyI	GAGTC	2 cut(s)	450, 542
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	7 cut(s)	307, 332, 682, 733, 763, 856, 877
Mox20I	TGGCCA	1 cut(s)	980
MscI	TGGCCA	1 cut(s)	980
MslI	CAYNNNNRTG	3 cut(s)	12, 481, 986
Msp20I	TGGCCA	1 cut(s)	980
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	3 cut(s)	189, 197, 489
MvaI	CCWGG	2 cut(s)	189, 489
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	4 cut(s)	332, 473, 605, 977
NciI	CCSGG	1 cut(s)	197
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	4 cut(s)	49, 133, 178, 841
NlaIII	CATG	4 cut(s)	206, 922, 985, 1000
NlaIV	GGNNCC	3 cut(s)	39, 240, 670
NmuCI	GTSAC	2 cut(s)	191, 923
NspI	RCATGY	1 cut(s)	922
NspV	TTCGAA	1 cut(s)	876
OliI	CACNNNNGTG	1 cut(s)	481
PfeI	GAWTC	5 cut(s)	251, 279, 437, 496, 563
PkrI	GCNGC	4 cut(s)	747, 769, 804, 970
PleI	GAGTC	2 cut(s)	450, 542
PpsI	GAGTC	2 cut(s)	450, 542
Psp6I	CCWGG	2 cut(s)	187, 487
PspEI	GGTNACC	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	187, 487
PspN4I	GGNNCC	3 cut(s)	39, 240, 670
PsrI	GAACNNNNNNTAC	2 cut(s)	516, 548
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	3 cut(s)	12, 481, 986
SatI	GCNGC	4 cut(s)	746, 768, 803, 969
Sau3AI	GATC	4 cut(s)	49, 133, 178, 841
SchI	GAGTC	2 cut(s)	450, 542
ScrFI	CCNGG	3 cut(s)	189, 197, 489
SduI	GDGCHC	2 cut(s)	362, 469
SfaNI	GCATC	3 cut(s)	682, 930, 1001
SfuI	TTCGAA	1 cut(s)	876
SmiMI	CAYNNNNRTG	3 cut(s)	12, 481, 986
SmlI	CTYRAG	1 cut(s)	931
SmoI	CTYRAG	1 cut(s)	931
Sse9I	AATT	3 cut(s)	143, 575, 879
SsiI	CCGC	2 cut(s)	599, 812
SspMI	CTAG	3 cut(s)	56, 336, 729
StyD4I	CCNGG	3 cut(s)	187, 195, 487
TaaI	ACNGT	1 cut(s)	897
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	4 cut(s)	26, 147, 579, 876
TasI	AATT	3 cut(s)	143, 575, 879
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	5 cut(s)	251, 279, 437, 496, 563
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	2 cut(s)	191, 923
TseI	GCWGC	4 cut(s)	745, 767, 802, 968
Tsp45I	GTSAC	2 cut(s)	191, 923
TspDTI	ATGAA	5 cut(s)	191, 333, 588, 998, 1035
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	661
VneI	GTGCAC	1 cut(s)	358
XapI	RAATTY	2 cut(s)	143, 575
XceI	RCATGY	1 cut(s)	922
XspI	CTAG	3 cut(s)	56, 336, 729
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.