Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000215.1

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Reverse (-)

20486 .. 22628

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000215.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atggcaagtcaatcggaggaagaagctgttcctatggagaagaggcccggaatcttgttcatcggatcacccaccgtcggcaaaagaactctcatctctcgattactgggtttggacttggacgatggttcggattcttcaccgtctcggttggcggttcatgggtggagtatcaatactaagtactacacagctgatgtggctgtgtggatggctcatcttgatgagcagttttcgattgagaaggttccaatgtatgatcagctagttgctttgattatggtgtttgatacaactgagttgtcatctcttgttgcacttcagaaatgggtgtcgcgcaatgatcttcagaaattcgatatattgttgtgcatagggaataaagttgatcttgtgccgggtcacccggttcatgtggagtataggagacgtctgctgaaggttggggagccttttactgattcccagtcagatgttaccgggtatggaatctctgaaactgatgggagcagtttactgggggaggatgaaccagcttgggaggctagagggtcgtgtttggaatggtgcacggagaataacattgagtacattgaagcttgtggttcgaatgctgagtttgacaaatgtttgtcagttgatggtgatttacaaggtgttgaacgactctttggtgctctttctgcacatatgtggcctggaatgattctgaaaacaggcgataagattactgaaccatcattacctgaaagagaagactcgtcggaagaagaatctgattatgaattcgagtatgatgtcctatcggcgggttcagctgaaccttttgatgacacagataaaggatggggatgggtttctgccagtgatgttgctggaacctcagaaatgggaagactggatgctcataataatcttgtccaagagaatggaactactagcgctaatgaggagctgcatacttctacatcaatggctgcattacatagtgatatcaacaaggaagtagtggtgctcaatgcagaagaacctgaccgcgacacagaacttgatcaacgccaagatttagacgaggataaacctttcgaaattgaggatttggaacagttgatgtctgaaatcgggaacatgcgtgacagcttgagattgatgcctgattttcaaagacgagaaatggctgcaaaactggccatgaaaatggcatccatgtttgggggcgagagtgataatgaacaggaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

414

Amino Acids

46.06

Weight (kDa)

4.28

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	433
AccII	CGCG	2 cut(s)	337, 1038
AciI	CCGC	3 cut(s)	155, 809, 1036
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	1188
AcsI	RAATTY	2 cut(s)	353, 785
AcuI	CTGAAG	3 cut(s)	305, 332, 458
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	2 cut(s)	185, 590
AfeI	AGCGCT	1 cut(s)	943
AfiI	CCNNNNNNNGG	3 cut(s)	77, 808, 1212
AgsI	TTSAA	3 cut(s)	596, 662, 1163
AjnI	CCWGG	1 cut(s)	697
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AleI	CACNNNNGTG	1 cut(s)	691
AluBI	AGCT	8 cut(s)	26, 194, 265, 536, 599, 818, 955, 1140
AluI	AGCT	8 cut(s)	26, 194, 265, 536, 599, 818, 955, 1140
Alw21I	GWGCWC	3 cut(s)	572, 679, 1017
Alw26I	GTCTC	2 cut(s)	150, 421
Alw44I	GTGCAC	1 cut(s)	568
AlwI	GGATC	1 cut(s)	73
Aor51HI	AGCGCT	1 cut(s)	943
AoxI	GGCC	3 cut(s)	44, 695, 1188
ApaLI	GTGCAC	1 cut(s)	568
ApeKI	GCWGC	3 cut(s)	955, 977, 1178
ApoI	RAATTY	2 cut(s)	353, 785
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	2 cut(s)	339, 944
AspS9I	GGNCC	1 cut(s)	45
AsuC2I	CCSGG	4 cut(s)	48, 399, 407, 481
AsuHPI	GGTGA	4 cut(s)	60, 132, 395, 656
AsuII	TTCGAA	2 cut(s)	608, 1086
BaeGI	GKGCMC	1 cut(s)	572
BalI	TGGCCA	1 cut(s)	1190
BbsI	GAAGAC	2 cut(s)	762, 901
Bbv12I	GWGCWC	3 cut(s)	572, 679, 1017
BbvI	GCAGC	3 cut(s)	942, 964, 1165
BccI	CCATC	7 cut(s)	119, 205, 497, 635, 745, 840, 846
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	699
BclI	TGATCA	2 cut(s)	259, 1051
BcnI	CCSGG	4 cut(s)	48, 399, 407, 481
BcoDI	GTCTC	2 cut(s)	150, 421
BfaI	CTAG	3 cut(s)	266, 546, 939
BfoI	RGCGCY	1 cut(s)	945
BisI	GCNGC	3 cut(s)	956, 978, 1179
BlsI	GCNGC	3 cut(s)	957, 979, 1180
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	5 cut(s)	48, 399, 407, 481, 699
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	3 cut(s)	249, 450, 880
BmrFI	CCNGG	5 cut(s)	48, 399, 407, 481, 699
BmrI	ACTGGG	3 cut(s)	116, 460, 527
BmsI	GCATC	3 cut(s)	892, 1140, 1211
BmuI	ACTGGG	3 cut(s)	116, 460, 527
BpiI	GAAGAC	2 cut(s)	762, 901
Bpu14I	TTCGAA	2 cut(s)	608, 1086
BpuEI	CTTGAG	1 cut(s)	1162
BpuMI	CCSGG	4 cut(s)	48, 399, 407, 481
BsaHI	GRCGYC	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 808, 1212
Bse1I	ACTGG	6 cut(s)	111, 466, 522, 864, 903, 1191
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	699
BseGI	GGATG	6 cut(s)	216, 532, 851, 857, 907, 1202
BseLI	CCNNNNNNNGG	3 cut(s)	77, 808, 1212
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	3 cut(s)	288, 606, 897
BseNI	ACTGG	6 cut(s)	111, 466, 522, 864, 903, 1191
BseRI	GAGGAG	1 cut(s)	965
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	3 cut(s)	942, 964, 1165
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	2 cut(s)	337, 1038
BshFI	GGCC	3 cut(s)	46, 697, 1190
BsiHKAI	GWGCWC	3 cut(s)	572, 679, 1017
BsiSI	CCGG	4 cut(s)	48, 398, 407, 480
BslI	CCNNNNNNNGG	3 cut(s)	77, 808, 1212
BsmAI	GTCTC	2 cut(s)	150, 421
BsmBI	CGTCTC	2 cut(s)	150, 421
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	3 cut(s)	46, 697, 1190
Bsp119I	TTCGAA	2 cut(s)	608, 1086
Bsp1286I	GDGCHC	3 cut(s)	572, 679, 1017
Bsp143I	GATC	5 cut(s)	65, 259, 343, 388, 1051
BspACI	CCGC	3 cut(s)	155, 809, 1036
BspANI	GGCC	3 cut(s)	46, 697, 1190
BspCNI	CTCAG	3 cut(s)	289, 607, 896
BspFNI	CGCG	2 cut(s)	337, 1038
BspLI	GGNNCC	3 cut(s)	249, 450, 880
BspPI	GGATC	1 cut(s)	73
BspT104I	TTCGAA	2 cut(s)	608, 1086
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	6 cut(s)	111, 466, 522, 864, 903, 1191
BssMI	GATC	5 cut(s)	65, 259, 343, 388, 1051
BssNI	GRCGYC	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	3 cut(s)	76, 144, 1107
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	430
BstBI	TTCGAA	2 cut(s)	608, 1086
BstDEI	CTNAG	4 cut(s)	180, 297, 615, 883
BstEII	GGTNACC	1 cut(s)	401
BstF5I	GGATG	6 cut(s)	216, 532, 851, 857, 907, 1202
BstFNI	CGCG	2 cut(s)	337, 1038
BstH2I	RGCGCY	1 cut(s)	945
BstHHI	GCGC	2 cut(s)	339, 944
BstKTI	GATC	5 cut(s)	68, 262, 346, 391, 1054
BstMAI	GTCTC	2 cut(s)	150, 421
BstMBI	GATC	5 cut(s)	65, 259, 343, 388, 1051
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 542, 683, 815, 1187
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	1 cut(s)	1132
BstPI	GGTNACC	1 cut(s)	401
BstSCI	CCNGG	5 cut(s)	46, 397, 405, 479, 697
BstSLI	GKGCMC	1 cut(s)	572
BstUI	CGCG	2 cut(s)	337, 1038
BstV1I	GCAGC	3 cut(s)	942, 964, 1165
BstV2I	GAAGAC	2 cut(s)	762, 901
BstXI	CCANNNNNNTGG	2 cut(s)	929, 1198
BsuRI	GGCC	3 cut(s)	46, 697, 1190
BtsCI	GGATG	6 cut(s)	216, 532, 851, 857, 907, 1202
BtsIMutI	CAGTG	1 cut(s)	871
CfoI	GCGC	2 cut(s)	339, 944
Cfr13I	GGNCC	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	184, 589
CviAII	CATG	5 cut(s)	161, 413, 1129, 1192, 1207
CviQI	GTAC	2 cut(s)	184, 589
DdeI	CTNAG	4 cut(s)	180, 297, 615, 883
DpnI	GATC	5 cut(s)	67, 261, 345, 390, 1053
DpnII	GATC	5 cut(s)	65, 259, 343, 388, 1051
EaeI	YGGCCR	1 cut(s)	1188
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	994
Eco47III	AGCGCT	1 cut(s)	943
Eco57I	CTGAAG	3 cut(s)	305, 332, 458
Eco91I	GGTNACC	1 cut(s)	401
EcoO65I	GGTNACC	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	785
EcoRII	CCWGG	1 cut(s)	697
EcoRV	GATATC	1 cut(s)	994
Esp3I	CGTCTC	2 cut(s)	150, 421
FaeI	CATG	5 cut(s)	164, 416, 1132, 1195, 1210
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	5 cut(s)	160, 412, 1128, 1191, 1206
FauI	CCCGC	1 cut(s)	802
FauNDI	CATATG	1 cut(s)	690
FbaI	TGATCA	2 cut(s)	259, 1051
Fnu4HI	GCNGC	3 cut(s)	956, 978, 1179
FokI	GGATG	6 cut(s)	223, 539, 858, 864, 914, 1189
Fsp4HI	GCNGC	3 cut(s)	956, 978, 1179
FspBI	CTAG	3 cut(s)	266, 546, 939
GlaI	GCGC	2 cut(s)	338, 943
GluI	GCNGC	3 cut(s)	956, 978, 1179
HaeII	RGCGCY	1 cut(s)	945
HaeIII	GGCC	3 cut(s)	46, 697, 1190
HapII	CCGG	4 cut(s)	48, 398, 407, 480
HhaI	GCGC	2 cut(s)	339, 944
Hin1I	GRCGYC	1 cut(s)	430
Hin1II	CATG	5 cut(s)	164, 416, 1132, 1195, 1210
Hin6I	GCGC	2 cut(s)	337, 942
HinP1I	GCGC	2 cut(s)	337, 942
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	8 cut(s)	51, 134, 461, 489, 666, 706, 758, 773
HpaII	CCGG	4 cut(s)	48, 398, 407, 480
HphI	GGTGA	4 cut(s)	60, 132, 395, 656
Hpy166II	GTNNAC	2 cut(s)	515, 570
Hpy188III	TCNNGA	3 cut(s)	99, 221, 1123
Hpy8I	GTNNAC	2 cut(s)	515, 570
Hpy99I	CGWCG	2 cut(s)	80, 766
HpyAV	CCTTC	2 cut(s)	238, 433
HpyCH4III	ACNGT	3 cut(s)	76, 144, 1107
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	8 cut(s)	317, 372, 570, 686, 958, 980, 1022, 1181
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 542, 683, 815, 1187
HpyF3I	CTNAG	4 cut(s)	180, 297, 615, 883
HpySE526I	ACGT	1 cut(s)	430
Hsp92I	GRCGYC	1 cut(s)	430
Hsp92II	CATG	5 cut(s)	164, 416, 1132, 1195, 1210
HspAI	GCGC	2 cut(s)	337, 942
Ksp22I	TGATCA	2 cut(s)	259, 1051
Kzo9I	GATC	5 cut(s)	65, 259, 343, 388, 1051
LmnI	GCTCC	3 cut(s)	448, 507, 952
Lsp1109I	GCAGC	3 cut(s)	942, 964, 1165
LweI	GCATC	3 cut(s)	892, 1140, 1211
MaeI	CTAG	3 cut(s)	266, 546, 939
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	3 cut(s)	401, 475, 1133
MalI	GATC	5 cut(s)	67, 261, 345, 390, 1053
MboI	GATC	5 cut(s)	65, 259, 343, 388, 1051
MboII	GAAGA	9 cut(s)	32, 52, 129, 338, 767, 779, 782, 906, 1037
MhlI	GDGCHC	3 cut(s)	572, 679, 1017
MlsI	TGGCCA	1 cut(s)	1190
MluCI	AATT	3 cut(s)	353, 785, 1089
MluNI	TGGCCA	1 cut(s)	1190
MlyI	GAGTC	2 cut(s)	660, 752
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	9 cut(s)	10, 36, 517, 535, 542, 892, 943, 1066, 1087
Mox20I	TGGCCA	1 cut(s)	1190
MroXI	GAANNNNTTC	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	1190
MslI	CAYNNNNRTG	3 cut(s)	222, 691, 1196
Msp20I	TGGCCA	1 cut(s)	1190
MspA1I	CMGCKG	2 cut(s)	194, 818
MspI	CCGG	4 cut(s)	48, 398, 407, 480
MspR9I	CCNGG	5 cut(s)	48, 399, 407, 481, 699
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	1 cut(s)	699
MvnI	CGCG	2 cut(s)	337, 1038
MwoI	GCNNNNNNNGC	5 cut(s)	200, 542, 683, 815, 1187
NciI	CCSGG	4 cut(s)	48, 399, 407, 481
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	5 cut(s)	65, 259, 343, 388, 1051
NlaIII	CATG	5 cut(s)	164, 416, 1132, 1195, 1210
NlaIV	GGNNCC	3 cut(s)	249, 450, 880
NmuCI	GTSAC	2 cut(s)	401, 1133
NspI	RCATGY	1 cut(s)	1132
NspV	TTCGAA	2 cut(s)	608, 1086
OliI	CACNNNNGTG	1 cut(s)	691
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	6 cut(s)	51, 134, 461, 489, 706, 773
PkrI	GCNGC	3 cut(s)	957, 979, 1180
PleI	GAGTC	2 cut(s)	660, 752
PpsI	GAGTC	2 cut(s)	660, 752
Psp6I	CCWGG	1 cut(s)	697
PspEI	GGTNACC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	3 cut(s)	249, 450, 880
PspPI	GGNCC	1 cut(s)	45
PsrI	GAACNNNNNNTAC	2 cut(s)	726, 758
PvuII	CAGCTG	2 cut(s)	194, 818
RsaI	GTAC	2 cut(s)	185, 590
RsaNI	GTAC	2 cut(s)	184, 589
RseI	CAYNNNNRTG	3 cut(s)	222, 691, 1196
SatI	GCNGC	3 cut(s)	956, 978, 1179
Sau3AI	GATC	5 cut(s)	65, 259, 343, 388, 1051
Sau96I	GGNCC	1 cut(s)	45
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	2 cut(s)	660, 752
ScrFI	CCNGG	5 cut(s)	48, 399, 407, 481, 699
SduI	GDGCHC	3 cut(s)	572, 679, 1017
SfaNI	GCATC	3 cut(s)	892, 1140, 1211
SfuI	TTCGAA	2 cut(s)	608, 1086
SmiMI	CAYNNNNRTG	3 cut(s)	222, 691, 1196
SmlI	CTYRAG	1 cut(s)	1141
SmoI	CTYRAG	1 cut(s)	1141
Sse9I	AATT	3 cut(s)	353, 785, 1089
SsiI	CCGC	3 cut(s)	155, 809, 1036
SspMI	CTAG	3 cut(s)	266, 546, 939
StyD4I	CCNGG	5 cut(s)	46, 397, 405, 479, 697
TaaI	ACNGT	3 cut(s)	76, 144, 1107
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	6 cut(s)	100, 236, 357, 608, 789, 1086
TasI	AATT	3 cut(s)	353, 785, 1089
TatI	WGTACW	2 cut(s)	183, 588
TfiI	GAWTC	6 cut(s)	51, 134, 461, 489, 706, 773
TscAI	CASTG	1 cut(s)	871
TseFI	GTSAC	2 cut(s)	401, 1133
TseI	GCWGC	3 cut(s)	955, 977, 1178
Tsp45I	GTSAC	2 cut(s)	401, 1133
TspDTI	ATGAA	7 cut(s)	49, 149, 401, 543, 798, 1208, 1245
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	1 cut(s)	871
VneI	GTGCAC	1 cut(s)	568
XapI	RAATTY	2 cut(s)	353, 785
XceI	RCATGY	1 cut(s)	1132
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	3 cut(s)	266, 546, 939
ZraI	GACGTC	1 cut(s)	431
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.